Wall clock time and date at job start Mon Mar 30 2020 02:05:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50701 * 1 3 3 C 1.37809 * 121.55759 * 2 1 4 4 C 1.35139 * 114.76145 * 180.20466 * 3 2 1 5 5 C 1.50699 * 127.25057 * 179.86705 * 4 3 2 6 6 H 1.09000 * 109.46670 * 359.71123 * 5 4 3 7 7 C 1.52997 * 109.47078 * 239.70827 * 5 4 3 8 8 C 1.50706 * 109.46817 * 119.70900 * 5 4 3 9 9 H 1.07999 * 120.00196 * 0.02562 * 8 5 4 10 10 C 1.37879 * 119.99394 * 180.02562 * 8 5 4 11 11 N 1.31514 * 120.00338 * 359.97438 * 10 8 5 12 12 Si 1.86800 * 119.99426 * 180.02562 * 10 8 5 13 13 H 1.48501 * 109.47361 * 359.97438 * 12 10 8 14 14 H 1.48500 * 109.47264 * 120.00115 * 12 10 8 15 15 H 1.48500 * 109.46969 * 239.99720 * 12 10 8 16 16 S 1.72054 * 105.49874 * 359.60764 * 4 3 2 17 17 N 1.30077 * 121.55723 * 179.75089 * 2 1 3 18 18 H 1.09001 * 109.47465 * 270.22042 * 1 2 3 19 19 H 1.09002 * 109.47207 * 30.22865 * 1 2 3 20 20 H 1.09001 * 109.47128 * 150.22290 * 1 2 3 21 21 H 1.08003 * 122.61931 * 0.03836 * 3 2 1 22 22 H 1.09002 * 109.47153 * 60.00207 * 7 5 4 23 23 H 1.09001 * 109.46832 * 180.02562 * 7 5 4 24 24 H 1.09004 * 109.47261 * 300.00035 * 7 5 4 25 25 H 0.96996 * 119.99730 * 180.02562 * 11 10 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2282 1.1743 0.0000 4 6 3.5701 1.0144 -0.0044 5 6 4.6178 2.0976 -0.0083 6 1 4.1317 3.0731 -0.0123 7 6 5.4912 1.9577 -1.2567 8 6 5.4773 1.9695 1.2230 9 1 5.2844 1.1823 1.9368 10 6 6.5099 2.8575 1.4382 11 7 6.7451 3.8159 0.5688 12 14 7.5756 2.6984 2.9641 13 1 7.1081 1.5467 3.7766 14 1 8.9879 2.4795 2.5609 15 1 7.4777 3.9430 3.7682 16 16 3.8305 -0.6863 0.0030 17 7 2.1878 -1.1084 0.0048 18 1 -0.3634 0.0040 1.0276 19 1 -0.3634 0.8879 -0.5174 20 1 -0.3633 -0.8920 -0.5104 21 1 1.7578 2.1465 0.0006 22 1 4.8696 2.0503 -2.1473 23 1 6.2493 2.7409 -1.2593 24 1 5.9773 0.9821 -1.2527 25 1 7.4717 4.4403 0.7201 RHF calculation, no. of doubly occupied orbitals= 33 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260528867.mol2 25 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:05:05 Heat of formation + Delta-G solvation = 2.547654 kcal Electronic energy + Delta-G solvation = -10246.093558 eV Core-core repulsion = 8349.941319 eV Total energy + Delta-G solvation = -1896.152239 eV No. of doubly occupied orbitals = 33 Molecular weight (most abundant/longest-lived isotopes) = 197.057 amu Computer time = 0.14 seconds Orbital eigenvalues (eV) -39.94352 -36.65374 -33.57092 -30.55649 -30.35885 -27.30392 -24.59411 -22.01972 -20.33590 -18.95941 -17.86501 -16.78051 -15.78745 -15.52710 -14.79924 -14.58427 -13.84135 -13.56907 -13.29574 -13.18465 -12.88845 -12.75622 -12.48007 -12.29512 -11.93222 -11.75545 -11.28642 -11.15934 -10.53790 -10.08279 -9.44656 -8.17544 -6.32408 -0.02795 0.73885 1.14615 1.40216 1.43164 1.53913 1.65950 2.40790 3.11700 3.79892 4.30454 4.46350 4.56852 4.71321 4.80177 4.90946 4.94752 5.10051 5.15028 5.34202 5.49629 5.72094 5.87882 5.92844 6.19100 6.73291 7.36482 8.87678 Molecular weight = 197.06amu Principal moments of inertia in cm(-1) A = 0.053566 B = 0.010343 C = 0.010034 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 522.594798 B = 2706.443056 C = 2789.829537 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.077 4.077 2 C 0.121 3.879 3 C -0.245 4.245 4 C -0.113 4.113 5 C 0.103 3.897 6 H 0.029 0.971 7 C -0.125 4.125 8 C -0.532 4.532 9 H 0.051 0.949 10 C 0.023 3.977 11 N -0.910 5.910 12 Si 0.955 3.045 13 H -0.271 1.271 14 H -0.276 1.276 15 H -0.277 1.277 16 S 0.212 5.788 17 N -0.509 5.509 18 H 0.094 0.906 19 H 0.101 0.899 20 H 0.082 0.918 21 H 0.166 0.834 22 H 0.031 0.969 23 H 0.070 0.930 24 H 0.031 0.969 25 H 0.266 0.734 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.986 -3.989 -1.145 9.000 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C -0.057 4.057 3 C -0.278 4.278 4 C -0.243 4.243 5 C 0.083 3.917 6 H 0.047 0.953 7 C -0.184 4.184 8 C -0.570 4.570 9 H 0.069 0.931 10 C -0.177 4.177 11 N -0.549 5.549 12 Si 0.780 3.220 13 H -0.196 1.196 14 H -0.202 1.202 15 H -0.203 1.203 16 S 0.366 5.634 17 N -0.331 5.331 18 H 0.112 0.888 19 H 0.120 0.880 20 H 0.100 0.900 21 H 0.184 0.816 22 H 0.050 0.950 23 H 0.089 0.911 24 H 0.051 0.949 25 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges -6.998 -5.905 -1.174 9.231 hybrid contribution 0.034 1.834 0.718 1.970 sum -6.964 -4.071 -0.456 8.079 Atomic orbital electron populations 1.20664 0.83719 1.04884 1.04532 1.22014 1.00656 0.87724 0.95304 1.21392 0.92242 1.01484 1.12707 1.26169 0.99271 1.01370 0.97462 1.17360 0.89471 0.89573 0.95308 0.95330 1.21701 1.00228 1.01106 0.95343 1.21323 1.14849 1.14588 1.06265 0.93073 1.25630 0.98169 0.94578 0.99292 1.69974 1.31386 1.17104 1.36411 0.85542 0.78667 0.78130 0.79612 1.19571 1.20195 1.20259 1.83812 1.10807 0.99135 1.69640 1.76618 1.00440 1.27288 1.28753 0.88786 0.88025 0.89955 0.81625 0.94986 0.91076 0.94940 0.92480 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -1.67 10.26 71.24 0.73 -0.94 15 2 C 0.12 4.04 6.71 42.72 0.29 4.33 15 3 C -0.25 -9.06 9.90 21.45 0.21 -8.84 15 4 C -0.11 -4.92 5.08 24.97 0.13 -4.79 15 5 C 0.10 5.10 2.73 -12.29 -0.03 5.07 15 6 H 0.03 1.51 8.13 -2.39 -0.02 1.49 15 7 C -0.13 -5.93 8.92 71.98 0.64 -5.29 15 8 C -0.53 -28.61 8.50 25.60 0.22 -28.39 15 9 H 0.05 2.79 7.74 -2.91 -0.02 2.76 15 10 C 0.02 1.25 5.30 84.66 0.45 1.70 15 11 N -0.91 -50.18 11.32 21.45 0.24 -49.94 15 12 Si 0.96 42.53 29.54 68.60 2.03 44.56 15 13 H -0.27 -11.97 7.11 99.48 0.71 -11.26 15 14 H -0.28 -12.00 7.11 99.48 0.71 -11.30 15 15 H -0.28 -12.02 7.11 99.48 0.71 -11.31 15 16 S 0.21 8.67 23.60 -56.49 -1.33 7.34 15 17 N -0.51 -19.33 12.05 -52.60 -0.63 -19.96 15 18 H 0.09 1.78 8.14 -2.39 -0.02 1.76 15 19 H 0.10 1.72 8.12 -2.39 -0.02 1.71 15 20 H 0.08 1.65 8.14 -2.39 -0.02 1.63 15 21 H 0.17 5.35 8.06 -2.91 -0.02 5.33 15 22 H 0.03 1.34 8.14 -2.39 -0.02 1.32 15 23 H 0.07 3.67 6.07 -2.39 -0.01 3.66 15 24 H 0.03 1.48 8.12 -2.38 -0.02 1.46 15 25 H 0.27 13.85 8.31 -92.71 -0.77 13.08 15 Total: -1.00 -58.94 234.22 4.11 -54.83 By element: Atomic # 1 Polarization: -0.84 SS G_CDS: 1.17 Total: 0.33 kcal Atomic # 6 Polarization: -39.79 SS G_CDS: 2.63 Total: -37.15 kcal Atomic # 7 Polarization: -69.51 SS G_CDS: -0.39 Total: -69.90 kcal Atomic # 14 Polarization: 42.53 SS G_CDS: 2.03 Total: 44.56 kcal Atomic # 16 Polarization: 8.67 SS G_CDS: -1.33 Total: 7.34 kcal Total: -58.94 4.11 -54.83 kcal The number of atoms in the molecule is 25 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260528867.mol2 25 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 57.379 kcal (2) G-P(sol) polarization free energy of solvation -58.939 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -1.560 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.108 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -54.832 kcal (6) G-S(sol) free energy of system = (1) + (5) 2.548 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.14 seconds