Wall clock time and date at job start Mon Mar 30 2020 02:24:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42900 * 1 3 3 C 1.35709 * 116.99417 * 2 1 4 4 C 1.41938 * 126.87840 * 180.31714 * 3 2 1 5 5 C 1.35269 * 103.95988 * 180.14010 * 4 3 2 6 6 C 1.50700 * 126.70471 * 179.88090 * 5 4 3 7 7 H 1.08994 * 109.47551 * 359.71081 * 6 5 4 8 8 C 1.52996 * 109.47211 * 119.71579 * 6 5 4 9 9 C 1.50702 * 109.46869 * 239.71135 * 6 5 4 10 10 H 1.08002 * 120.00299 * 0.02562 * 9 6 5 11 11 C 1.37884 * 119.99942 * 179.72213 * 9 6 5 12 12 N 1.31514 * 119.99698 * 0.28408 * 11 9 6 13 13 Si 1.86794 * 119.99837 * 180.27476 * 11 9 6 14 14 H 1.48501 * 109.47188 * 90.00793 * 13 11 9 15 15 H 1.48501 * 109.47085 * 210.00372 * 13 11 9 16 16 H 1.48498 * 109.47634 * 330.00608 * 13 11 9 17 17 O 1.34078 * 106.58501 * 359.62050 * 5 4 3 18 18 N 1.20914 * 111.71284 * 0.26062 * 17 5 4 19 19 H 1.09000 * 109.46497 * 179.97438 * 1 2 3 20 20 H 1.08990 * 109.47548 * 300.00080 * 1 2 3 21 21 H 1.09001 * 109.47143 * 60.00570 * 1 2 3 22 22 H 1.08004 * 128.01907 * 0.04345 * 4 3 2 23 23 H 1.09001 * 109.47094 * 179.97438 * 8 6 5 24 24 H 1.09003 * 109.46851 * 299.99806 * 8 6 5 25 25 H 1.09003 * 109.47532 * 59.99881 * 8 6 5 26 26 H 0.97005 * 119.99651 * 179.97438 * 12 11 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0450 1.2092 0.0000 4 6 3.4433 1.4529 -0.0063 5 6 3.5395 2.8022 -0.0002 6 6 4.8086 3.6147 -0.0004 7 1 5.6687 2.9452 -0.0013 8 6 4.8485 4.4979 -1.2491 9 6 4.8493 4.4832 1.2305 10 1 4.0375 4.4498 1.9421 11 6 5.9258 5.3159 1.4515 12 7 6.9145 5.3563 0.5852 13 14 5.9798 6.3867 2.9811 14 1 6.6452 5.6444 4.0818 15 1 6.7414 7.6278 2.6899 16 1 4.5958 6.7392 3.3878 17 8 2.2849 3.2752 0.0004 18 7 1.4700 2.3820 0.0005 19 1 -0.3632 -1.0277 -0.0005 20 1 -0.3634 0.5138 0.8899 21 1 -0.3633 0.5137 -0.8900 22 1 4.2447 0.7289 -0.0127 23 1 5.7663 5.0859 -1.2491 24 1 4.8191 3.8697 -2.1395 25 1 3.9884 5.1675 -1.2483 26 1 7.6717 5.9424 0.7405 RHF calculation, no. of doubly occupied orbitals= 36 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260622719.mol2 26 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:24:20 Heat of formation + Delta-G solvation = 17.041022 kcal Electronic energy + Delta-G solvation = -12321.348134 eV Core-core repulsion = 9983.071503 eV Total energy + Delta-G solvation = -2338.276631 eV No. of doubly occupied orbitals = 36 Molecular weight (most abundant/longest-lived isotopes) = 197.084 amu Computer time = 0.13 seconds Orbital eigenvalues (eV) -44.07378 -38.41737 -34.86452 -32.41660 -31.51942 -28.95200 -27.30885 -25.27941 -22.62035 -22.35874 -20.17310 -17.28621 -16.86183 -16.11191 -15.91275 -15.08121 -14.93052 -14.40526 -13.21775 -13.05276 -12.62542 -11.99295 -11.62397 -11.52710 -11.08937 -10.96928 -10.68575 -10.49349 -10.21188 -9.94453 -9.31091 -8.79375 -8.52538 -8.38796 -6.15096 -4.23269 2.30492 2.96415 3.20144 3.26727 3.33454 3.38789 4.08274 4.35437 4.85717 5.17165 5.24869 5.27406 5.50767 5.71017 5.93292 6.20129 6.57412 6.70179 6.94324 6.96983 7.41982 7.46556 7.70278 7.90021 8.12801 8.77065 8.99907 9.42578 10.90798 Molecular weight = 197.08amu Principal moments of inertia in cm(-1) A = 0.062160 B = 0.008938 C = 0.008415 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 450.339311 B = 3132.036374 C = 3326.759995 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.034 3.966 2 O -0.290 6.290 3 C 0.200 3.800 4 C -0.279 4.279 5 C 0.069 3.931 6 C 0.108 3.892 7 H 0.065 0.935 8 C -0.138 4.138 9 C -0.518 4.518 10 H 0.061 0.939 11 C 0.067 3.933 12 N -0.888 5.888 13 Si 0.900 3.100 14 H -0.279 1.279 15 H -0.285 1.285 16 H -0.272 1.272 17 O 0.093 5.907 18 N -0.435 5.435 19 H 0.098 0.902 20 H 0.055 0.945 21 H 0.054 0.946 22 H 0.168 0.832 23 H 0.095 0.905 24 H 0.015 0.985 25 H 0.037 0.963 26 H 0.265 0.735 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.403 -5.992 -1.519 8.900 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.061 4.061 2 O -0.197 6.197 3 C 0.002 3.998 4 C -0.302 4.302 5 C 0.005 3.995 6 C 0.089 3.911 7 H 0.083 0.917 8 C -0.196 4.196 9 C -0.556 4.556 10 H 0.080 0.920 11 C -0.135 4.135 12 N -0.525 5.525 13 Si 0.728 3.272 14 H -0.205 1.205 15 H -0.210 1.210 16 H -0.197 1.197 17 O 0.037 5.963 18 N -0.165 5.165 19 H 0.116 0.884 20 H 0.073 0.927 21 H 0.073 0.927 22 H 0.186 0.814 23 H 0.113 0.887 24 H 0.034 0.966 25 H 0.056 0.944 26 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges -7.383 -5.756 -1.554 9.490 hybrid contribution 0.479 0.040 0.845 0.972 sum -6.905 -5.716 -0.709 8.992 Atomic orbital electron populations 1.22931 0.77984 1.03151 1.02039 1.86131 1.21726 1.21875 1.89971 1.22030 0.91180 0.85421 1.01161 1.21698 0.93429 0.96145 1.18900 1.25604 0.88491 0.92971 0.92388 1.17782 0.83582 0.93246 0.96479 0.91748 1.21822 1.03793 0.99572 0.94413 1.20966 1.05865 1.23334 1.05481 0.92026 1.24909 0.95130 0.96640 0.96869 1.69862 1.08763 1.38739 1.35179 0.86444 0.78345 0.79737 0.82700 1.20513 1.21017 1.19664 1.84756 1.13097 1.29420 1.69007 1.74027 1.16975 0.96550 1.28908 0.88383 0.92651 0.92699 0.81423 0.88664 0.96625 0.94423 0.92547 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.45 10.73 101.05 1.08 1.53 15 2 O -0.29 -5.04 10.57 -18.83 -0.20 -5.24 15 3 C 0.20 4.01 8.01 -16.65 -0.13 3.88 15 4 C -0.28 -5.68 11.09 -39.22 -0.44 -6.12 15 5 C 0.07 1.54 5.92 -35.37 -0.21 1.33 15 6 C 0.11 2.62 2.72 -92.92 -0.25 2.36 15 7 H 0.06 1.59 8.12 -51.93 -0.42 1.17 15 8 C -0.14 -3.19 8.95 37.16 0.33 -2.85 15 9 C -0.52 -13.76 8.54 -34.44 -0.29 -14.05 15 10 H 0.06 1.66 7.74 -52.49 -0.41 1.26 15 11 C 0.07 1.77 5.31 -17.82 -0.09 1.67 15 12 N -0.89 -23.91 11.33 55.43 0.63 -23.28 15 13 Si 0.90 20.63 29.54 -169.99 -5.02 15.61 15 14 H -0.28 -6.35 7.11 56.52 0.40 -5.95 15 15 H -0.28 -6.44 7.11 56.52 0.40 -6.04 15 16 H -0.27 -6.24 7.11 56.52 0.40 -5.84 15 17 O 0.09 2.11 11.19 17.08 0.19 2.30 15 18 N -0.43 -9.26 11.54 30.38 0.35 -8.91 15 19 H 0.10 0.91 8.14 -51.93 -0.42 0.49 15 20 H 0.05 0.72 8.14 -51.93 -0.42 0.30 15 21 H 0.05 0.70 8.14 -51.93 -0.42 0.27 15 22 H 0.17 2.99 8.06 -52.48 -0.42 2.57 15 23 H 0.09 2.36 6.08 -51.93 -0.32 2.05 15 24 H 0.01 0.31 8.14 -51.93 -0.42 -0.11 15 25 H 0.04 0.85 8.14 -51.93 -0.42 0.43 15 26 H 0.26 6.79 8.31 -40.82 -0.34 6.45 15 LS Contribution 235.77 15.07 3.55 3.55 Total: -1.00 -27.85 235.77 -3.31 -31.17 By element: Atomic # 1 Polarization: -0.14 SS G_CDS: -2.81 Total: -2.96 kcal Atomic # 6 Polarization: -12.24 SS G_CDS: 0.00 Total: -12.24 kcal Atomic # 7 Polarization: -33.17 SS G_CDS: 0.98 Total: -32.19 kcal Atomic # 8 Polarization: -2.93 SS G_CDS: -0.01 Total: -2.94 kcal Atomic # 14 Polarization: 20.63 SS G_CDS: -5.02 Total: 15.61 kcal Total LS contribution 3.55 Total: 3.55 kcal Total: -27.85 -3.31 -31.17 kcal The number of atoms in the molecule is 26 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260622719.mol2 26 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 48.210 kcal (2) G-P(sol) polarization free energy of solvation -27.855 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 20.355 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -3.314 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -31.169 kcal (6) G-S(sol) free energy of system = (1) + (5) 17.041 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.13 seconds