Wall clock time and date at job start Mon Mar 30 2020 02:24:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42899 * 1 3 3 C 1.35705 * 116.99889 * 2 1 4 4 C 1.41931 * 126.87739 * 179.97438 * 3 2 1 5 5 C 1.35269 * 103.96044 * 180.02562 * 4 3 2 6 6 C 1.50707 * 126.70742 * 180.02562 * 5 4 3 7 7 H 1.08995 * 109.46963 * 0.02562 * 6 5 4 8 8 C 1.52999 * 109.46640 * 239.99794 * 6 5 4 9 9 C 1.50697 * 109.46656 * 120.00128 * 6 5 4 10 10 H 1.08002 * 120.00599 * 0.02562 * 9 6 5 11 11 C 1.37880 * 119.99675 * 179.97438 * 9 6 5 12 12 N 1.31517 * 120.00210 * 179.97438 * 11 9 6 13 13 Si 1.86800 * 120.00019 * 0.02562 * 11 9 6 14 14 H 1.48503 * 109.46845 * 269.99914 * 13 11 9 15 15 H 1.48503 * 109.47399 * 29.99403 * 13 11 9 16 16 H 1.48498 * 109.47295 * 150.00010 * 13 11 9 17 17 O 1.34076 * 106.58267 * 0.26209 * 5 4 3 18 18 N 1.20919 * 111.71730 * 359.52710 * 17 5 4 19 19 H 1.09002 * 109.46901 * 60.00410 * 1 2 3 20 20 H 1.09006 * 109.47088 * 180.02562 * 1 2 3 21 21 H 1.09001 * 109.47502 * 299.99877 * 1 2 3 22 22 H 1.08000 * 128.01818 * 0.02562 * 4 3 2 23 23 H 1.08998 * 109.47206 * 60.00324 * 8 6 5 24 24 H 1.09006 * 109.46667 * 180.02562 * 8 6 5 25 25 H 1.09000 * 109.47280 * 299.99919 * 8 6 5 26 26 H 0.96998 * 119.99640 * 180.02562 * 12 11 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0451 1.2092 0.0000 4 6 3.4433 1.4526 0.0005 5 6 3.5396 2.8019 0.0009 6 6 4.8089 3.6144 0.0009 7 1 5.6689 2.9448 0.0002 8 6 4.8496 4.4965 1.2504 9 6 4.8487 4.4839 -1.2293 10 1 4.0360 4.4517 -1.9399 11 6 5.9221 5.3213 -1.4472 12 7 5.9572 6.0797 -2.5210 13 14 7.3274 5.3775 -0.2178 14 1 7.0459 6.4130 0.8088 15 1 7.4633 4.0529 0.4397 16 1 8.5902 5.7114 -0.9243 17 8 2.2851 3.2751 0.0064 18 7 1.4700 2.3819 0.0001 19 1 -0.3633 0.5138 -0.8900 20 1 -0.3633 -1.0277 0.0005 21 1 -0.3634 0.5138 0.8900 22 1 4.2446 0.7285 0.0006 23 1 4.8207 3.8676 2.1402 24 1 5.7674 5.0845 1.2502 25 1 3.9895 5.1661 1.2506 26 1 6.7126 6.6686 -2.6744 RHF calculation, no. of doubly occupied orbitals= 36 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260622722.mol2 26 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:24:22 Heat of formation + Delta-G solvation = 26.618935 kcal Electronic energy + Delta-G solvation = -12364.294414 eV Core-core repulsion = 10026.433113 eV Total energy + Delta-G solvation = -2337.861301 eV No. of doubly occupied orbitals = 36 Molecular weight (most abundant/longest-lived isotopes) = 197.084 amu Computer time = 0.13 seconds Orbital eigenvalues (eV) -44.18803 -38.48061 -35.10569 -32.49386 -31.77464 -29.56576 -27.37991 -25.23274 -22.74953 -22.59611 -20.23045 -17.31072 -16.91010 -16.48741 -16.19252 -15.20237 -14.96426 -14.49153 -13.52880 -13.22608 -12.76573 -12.34076 -12.03863 -11.62184 -11.45965 -11.27415 -10.78217 -10.62349 -10.17931 -9.61337 -9.42214 -8.88895 -8.72102 -8.51805 -6.19633 -4.23099 2.18511 2.85912 3.13366 3.20051 3.28095 3.32476 3.92837 4.28188 4.76422 5.10705 5.20883 5.24272 5.43503 5.62573 5.67861 6.02334 6.18160 6.22606 6.45251 6.59388 6.73887 7.16052 7.34625 7.46284 8.31930 8.81802 8.89755 9.37164 10.92877 Molecular weight = 197.08amu Principal moments of inertia in cm(-1) A = 0.073192 B = 0.009139 C = 0.008809 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 382.464755 B = 3063.061203 C = 3177.775987 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.034 3.966 2 O -0.289 6.289 3 C 0.201 3.799 4 C -0.273 4.273 5 C 0.072 3.928 6 C 0.078 3.922 7 H 0.064 0.936 8 C -0.151 4.151 9 C -0.522 4.522 10 H 0.080 0.920 11 C 0.077 3.923 12 N -0.890 5.890 13 Si 0.887 3.113 14 H -0.275 1.275 15 H -0.264 1.264 16 H -0.294 1.294 17 O 0.099 5.901 18 N -0.430 5.430 19 H 0.056 0.944 20 H 0.099 0.901 21 H 0.055 0.945 22 H 0.170 0.830 23 H 0.036 0.964 24 H 0.051 0.949 25 H 0.062 0.938 26 H 0.268 0.732 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.616 -8.266 6.629 11.558 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.061 4.061 2 O -0.196 6.196 3 C 0.003 3.997 4 C -0.295 4.295 5 C 0.009 3.991 6 C 0.058 3.942 7 H 0.082 0.918 8 C -0.208 4.208 9 C -0.560 4.560 10 H 0.098 0.902 11 C -0.126 4.126 12 N -0.527 5.527 13 Si 0.717 3.283 14 H -0.202 1.202 15 H -0.189 1.189 16 H -0.221 1.221 17 O 0.042 5.958 18 N -0.158 5.158 19 H 0.075 0.925 20 H 0.117 0.883 21 H 0.073 0.927 22 H 0.188 0.812 23 H 0.055 0.945 24 H 0.069 0.931 25 H 0.081 0.919 26 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges -5.677 -7.989 6.511 11.766 hybrid contribution 1.174 -0.320 0.469 1.304 sum -4.503 -8.308 6.980 11.748 Atomic orbital electron populations 1.22952 0.77821 1.03253 1.02122 1.86131 1.21849 1.21737 1.89922 1.21990 0.91091 0.85474 1.01134 1.21670 0.93629 0.95951 1.18253 1.24888 0.88190 0.92574 0.93487 1.18145 0.85579 0.93990 0.96481 0.91785 1.22190 1.02029 0.99900 0.96675 1.20774 1.07779 1.22448 1.05014 0.90210 1.24936 0.97753 0.94621 0.95318 1.69872 1.31313 1.25058 1.26445 0.86854 0.81461 0.79129 0.80854 1.20168 1.18913 1.22144 1.84776 1.12824 1.29406 1.68796 1.74057 1.16745 0.96550 1.28494 0.92536 0.88303 0.92654 0.81249 0.94472 0.93081 0.91870 0.92235 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.43 10.73 101.05 1.08 1.51 15 2 O -0.29 -4.86 10.57 -18.82 -0.20 -5.06 15 3 C 0.20 3.89 8.01 -16.66 -0.13 3.76 15 4 C -0.27 -5.26 11.09 -39.23 -0.44 -5.70 15 5 C 0.07 1.54 5.92 -35.36 -0.21 1.33 15 6 C 0.08 1.75 2.31 -92.92 -0.22 1.53 15 7 H 0.06 1.38 7.18 -51.93 -0.37 1.01 15 8 C -0.15 -3.08 8.66 37.16 0.32 -2.76 15 9 C -0.52 -14.15 9.13 -34.44 -0.31 -14.46 15 10 H 0.08 2.40 7.98 -52.49 -0.42 1.98 15 11 C 0.08 2.12 5.45 -17.82 -0.10 2.02 15 12 N -0.89 -26.28 13.96 55.43 0.77 -25.50 15 13 Si 0.89 20.49 24.37 -169.99 -4.14 16.35 15 14 H -0.27 -6.17 6.87 56.52 0.39 -5.78 15 15 H -0.26 -5.69 6.53 56.52 0.37 -5.32 15 16 H -0.29 -6.85 7.11 56.52 0.40 -6.45 15 17 O 0.10 2.17 11.19 17.08 0.19 2.36 15 18 N -0.43 -8.90 11.54 30.38 0.35 -8.55 15 19 H 0.06 0.72 8.14 -51.93 -0.42 0.29 15 20 H 0.10 0.88 8.14 -51.93 -0.42 0.46 15 21 H 0.05 0.68 8.14 -51.93 -0.42 0.25 15 22 H 0.17 2.80 8.06 -52.49 -0.42 2.38 15 23 H 0.04 0.64 8.14 -51.93 -0.42 0.22 15 24 H 0.05 1.07 3.27 -51.93 -0.17 0.90 15 25 H 0.06 1.28 8.14 -51.93 -0.42 0.86 15 26 H 0.27 7.36 8.31 -40.82 -0.34 7.02 15 LS Contribution 228.94 15.07 3.45 3.45 Total: -1.00 -29.62 228.94 -2.25 -31.87 By element: Atomic # 1 Polarization: 0.51 SS G_CDS: -2.68 Total: -2.17 kcal Atomic # 6 Polarization: -12.77 SS G_CDS: 0.00 Total: -12.77 kcal Atomic # 7 Polarization: -35.17 SS G_CDS: 1.12 Total: -34.05 kcal Atomic # 8 Polarization: -2.68 SS G_CDS: -0.01 Total: -2.69 kcal Atomic # 14 Polarization: 20.49 SS G_CDS: -4.14 Total: 16.35 kcal Total LS contribution 3.45 Total: 3.45 kcal Total: -29.62 -2.25 -31.87 kcal The number of atoms in the molecule is 26 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260622722.mol2 26 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 58.493 kcal (2) G-P(sol) polarization free energy of solvation -29.620 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 28.872 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.254 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -31.874 kcal (6) G-S(sol) free energy of system = (1) + (5) 26.619 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.13 seconds