Wall clock time and date at job start Mon Mar 30 2020 02:24:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42899 * 1 3 3 C 1.35705 * 116.99889 * 2 1 4 4 C 1.41931 * 126.87739 * 179.97438 * 3 2 1 5 5 C 1.35269 * 103.96044 * 180.02562 * 4 3 2 6 6 C 1.50707 * 126.70742 * 180.02562 * 5 4 3 7 7 H 1.08995 * 109.46963 * 0.02562 * 6 5 4 8 8 C 1.52999 * 109.46640 * 239.99794 * 6 5 4 9 9 C 1.50697 * 109.46656 * 120.00128 * 6 5 4 10 10 H 1.08002 * 120.00599 * 0.02562 * 9 6 5 11 11 C 1.37880 * 119.99675 * 179.97438 * 9 6 5 12 12 N 1.31517 * 120.00210 * 179.97438 * 11 9 6 13 13 Si 1.86800 * 120.00019 * 0.02562 * 11 9 6 14 14 H 1.48503 * 109.46845 * 269.99914 * 13 11 9 15 15 H 1.48503 * 109.47399 * 29.99403 * 13 11 9 16 16 H 1.48498 * 109.47295 * 150.00010 * 13 11 9 17 17 O 1.34076 * 106.58267 * 0.26209 * 5 4 3 18 18 N 1.20919 * 111.71730 * 359.52710 * 17 5 4 19 19 H 1.09002 * 109.46901 * 60.00410 * 1 2 3 20 20 H 1.09006 * 109.47088 * 180.02562 * 1 2 3 21 21 H 1.09001 * 109.47502 * 299.99877 * 1 2 3 22 22 H 1.08000 * 128.01818 * 0.02562 * 4 3 2 23 23 H 1.08998 * 109.47206 * 60.00324 * 8 6 5 24 24 H 1.09006 * 109.46667 * 180.02562 * 8 6 5 25 25 H 1.09000 * 109.47280 * 299.99919 * 8 6 5 26 26 H 0.96998 * 119.99640 * 180.02562 * 12 11 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0451 1.2092 0.0000 4 6 3.4433 1.4526 0.0005 5 6 3.5396 2.8019 0.0009 6 6 4.8089 3.6144 0.0009 7 1 5.6689 2.9448 0.0002 8 6 4.8496 4.4965 1.2504 9 6 4.8487 4.4839 -1.2293 10 1 4.0360 4.4517 -1.9399 11 6 5.9221 5.3213 -1.4472 12 7 5.9572 6.0797 -2.5210 13 14 7.3274 5.3775 -0.2178 14 1 7.0459 6.4130 0.8088 15 1 7.4633 4.0529 0.4397 16 1 8.5902 5.7114 -0.9243 17 8 2.2851 3.2751 0.0064 18 7 1.4700 2.3819 0.0001 19 1 -0.3633 0.5138 -0.8900 20 1 -0.3633 -1.0277 0.0005 21 1 -0.3634 0.5138 0.8900 22 1 4.2446 0.7285 0.0006 23 1 4.8207 3.8676 2.1402 24 1 5.7674 5.0845 1.2502 25 1 3.9895 5.1661 1.2506 26 1 6.7126 6.6686 -2.6744 RHF calculation, no. of doubly occupied orbitals= 36 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260622722.mol2 26 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:24:22 Heat of formation + Delta-G solvation = 4.431053 kcal Electronic energy + Delta-G solvation = -12365.256553 eV Core-core repulsion = 10026.433113 eV Total energy + Delta-G solvation = -2338.823440 eV No. of doubly occupied orbitals = 36 Molecular weight (most abundant/longest-lived isotopes) = 197.084 amu Computer time = 0.14 seconds Orbital eigenvalues (eV) -45.75284 -39.78930 -36.89474 -34.19546 -33.59363 -31.21327 -28.48753 -27.15821 -24.34449 -24.24737 -21.76033 -19.09809 -18.52102 -18.28154 -17.62373 -16.71144 -16.37569 -16.01089 -15.16019 -14.95319 -14.48586 -14.05926 -13.28698 -13.07325 -12.97912 -12.79818 -12.43842 -12.35539 -11.88551 -11.38081 -11.33431 -10.76204 -10.37002 -10.15755 -8.30022 -6.39585 0.56937 1.34539 1.39897 1.44485 1.55496 1.81428 2.33605 2.36836 3.05278 3.30835 3.99101 4.07775 4.25132 4.29477 4.46466 4.55552 4.61138 4.74708 4.79230 5.00865 5.07792 5.48343 5.54212 5.99478 6.20119 6.64740 7.25023 7.29626 8.86745 Molecular weight = 197.08amu Principal moments of inertia in cm(-1) A = 0.073192 B = 0.009139 C = 0.008809 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 382.464755 B = 3063.061203 C = 3177.775987 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.026 3.974 2 O -0.292 6.292 3 C 0.205 3.795 4 C -0.261 4.261 5 C 0.050 3.950 6 C 0.079 3.921 7 H 0.083 0.917 8 C -0.148 4.148 9 C -0.529 4.529 10 H 0.027 0.973 11 C 0.018 3.982 12 N -0.945 5.945 13 Si 0.954 3.046 14 H -0.262 1.262 15 H -0.230 1.230 16 H -0.299 1.299 17 O 0.073 5.927 18 N -0.442 5.442 19 H 0.051 0.949 20 H 0.141 0.859 21 H 0.057 0.943 22 H 0.200 0.800 23 H 0.073 0.927 24 H 0.050 0.950 25 H 0.053 0.947 26 H 0.270 0.730 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.947 -10.030 8.640 13.814 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.069 4.069 2 O -0.199 6.199 3 C 0.007 3.993 4 C -0.283 4.283 5 C -0.013 4.013 6 C 0.059 3.941 7 H 0.101 0.899 8 C -0.206 4.206 9 C -0.567 4.567 10 H 0.046 0.954 11 C -0.180 4.180 12 N -0.584 5.584 13 Si 0.779 3.221 14 H -0.188 1.188 15 H -0.153 1.153 16 H -0.227 1.227 17 O 0.019 5.981 18 N -0.174 5.174 19 H 0.070 0.930 20 H 0.159 0.841 21 H 0.076 0.924 22 H 0.217 0.783 23 H 0.092 0.908 24 H 0.068 0.932 25 H 0.072 0.928 26 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges -5.024 -9.772 8.538 13.915 hybrid contribution 0.791 0.140 -0.239 0.838 sum -4.233 -9.632 8.300 13.401 Atomic orbital electron populations 1.23315 0.75510 1.06024 1.02017 1.86157 1.24102 1.20146 1.89464 1.22200 0.91449 0.85940 0.99753 1.22050 0.94474 0.95516 1.16236 1.24835 0.87807 0.93421 0.95236 1.18083 0.86928 0.93937 0.95144 0.89930 1.22124 1.01544 0.99925 0.96968 1.20962 1.06229 1.23471 1.06051 0.95418 1.25899 1.00881 0.93889 0.97327 1.70040 1.32663 1.26561 1.29150 0.85785 0.76888 0.81121 0.78346 1.18766 1.15293 1.22674 1.84747 1.13330 1.30284 1.69781 1.74036 1.16805 0.97050 1.29519 0.93021 0.84132 0.92392 0.78305 0.90825 0.93191 0.92803 0.92128 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.58 10.73 113.37 1.22 1.80 15 2 O -0.29 -9.07 10.57 -90.26 -0.95 -10.02 15 3 C 0.20 7.58 8.01 85.79 0.69 8.27 15 4 C -0.26 -9.49 11.09 22.50 0.25 -9.24 15 5 C 0.05 2.10 5.92 25.00 0.15 2.25 15 6 C 0.08 3.42 2.31 -12.28 -0.03 3.39 15 7 H 0.08 3.30 7.18 -2.39 -0.02 3.28 15 8 C -0.15 -5.68 8.66 71.98 0.62 -5.05 15 9 C -0.53 -29.26 9.13 25.60 0.23 -29.03 15 10 H 0.03 1.76 7.98 -2.91 -0.02 1.73 15 11 C 0.02 1.01 5.45 84.65 0.46 1.47 15 12 N -0.95 -57.57 13.96 21.45 0.30 -57.27 15 13 Si 0.95 41.06 24.37 68.60 1.67 42.74 15 14 H -0.26 -10.69 6.87 99.48 0.68 -10.00 15 15 H -0.23 -8.59 6.53 99.48 0.65 -7.94 15 16 H -0.30 -13.04 7.11 99.48 0.71 -12.34 15 17 O 0.07 3.22 11.19 71.30 0.80 4.02 15 18 N -0.44 -18.07 11.54 -172.61 -1.99 -20.06 15 19 H 0.05 1.22 8.14 -2.39 -0.02 1.20 15 20 H 0.14 1.98 8.14 -2.38 -0.02 1.96 15 21 H 0.06 1.29 8.14 -2.39 -0.02 1.27 15 22 H 0.20 5.84 8.06 -2.91 -0.02 5.82 15 23 H 0.07 2.28 8.14 -2.39 -0.02 2.26 15 24 H 0.05 1.91 3.27 -2.38 -0.01 1.90 15 25 H 0.05 2.12 8.14 -2.39 -0.02 2.10 15 26 H 0.27 15.27 8.31 -92.71 -0.77 14.50 15 Total: -1.00 -65.51 228.94 4.51 -60.99 By element: Atomic # 1 Polarization: 4.65 SS G_CDS: 1.10 Total: 5.75 kcal Atomic # 6 Polarization: -29.74 SS G_CDS: 3.59 Total: -26.15 kcal Atomic # 7 Polarization: -75.63 SS G_CDS: -1.69 Total: -77.33 kcal Atomic # 8 Polarization: -5.84 SS G_CDS: -0.16 Total: -6.00 kcal Atomic # 14 Polarization: 41.06 SS G_CDS: 1.67 Total: 42.74 kcal Total: -65.51 4.51 -60.99 kcal The number of atoms in the molecule is 26 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260622722.mol2 26 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 65.426 kcal (2) G-P(sol) polarization free energy of solvation -65.510 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -0.084 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.515 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.995 kcal (6) G-S(sol) free energy of system = (1) + (5) 4.431 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.14 seconds