Wall clock time and date at job start Mon Mar 30 2020 02:05:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50702 * 1 3 3 C 1.37805 * 122.62024 * 2 1 4 4 N 1.30085 * 116.87825 * 180.27563 * 3 2 1 5 5 S 1.69602 * 107.15029 * 359.76124 * 4 3 2 6 6 C 1.35138 * 122.61476 * 179.81734 * 2 1 3 7 7 C 1.50704 * 127.25179 * 0.03706 * 6 2 1 8 8 H 1.09002 * 109.46587 * 359.71118 * 7 6 2 9 9 C 1.52996 * 109.47195 * 119.70727 * 7 6 2 10 10 C 1.50693 * 109.47018 * 239.70910 * 7 6 2 11 11 H 1.07995 * 120.00295 * 354.35522 * 10 7 6 12 12 C 1.37884 * 119.99905 * 174.35701 * 10 7 6 13 13 N 1.31513 * 120.00103 * 156.90785 * 12 10 7 14 14 Si 1.86793 * 119.99851 * 336.91496 * 12 10 7 15 15 H 1.48508 * 109.47296 * 179.97438 * 14 12 10 16 16 H 1.48505 * 109.47694 * 59.99769 * 14 12 10 17 17 H 1.48503 * 109.47324 * 299.99498 * 14 12 10 18 18 H 1.09007 * 109.47389 * 270.18526 * 1 2 3 19 19 H 1.09006 * 109.47075 * 30.17981 * 1 2 3 20 20 H 1.08996 * 109.47593 * 150.18194 * 1 2 3 21 21 H 1.08001 * 121.56162 * 0.04151 * 3 2 1 22 22 H 1.09003 * 109.47130 * 53.20945 * 9 7 6 23 23 H 1.08993 * 109.47337 * 173.21170 * 9 7 6 24 24 H 1.09005 * 109.47192 * 293.21064 * 9 7 6 25 25 H 0.97003 * 120.00125 * 354.93380 * 13 12 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2499 1.1607 0.0000 4 7 3.5442 1.0305 -0.0056 5 16 3.8797 -0.6320 -0.0045 6 6 2.2354 -1.1383 0.0036 7 6 1.7167 -2.5532 0.0074 8 1 0.6267 -2.5405 0.0119 9 6 2.2130 -3.2817 -1.2432 10 6 2.2159 -3.2680 1.2365 11 1 2.9182 -2.7809 1.8966 12 6 1.7761 -4.5440 1.5183 13 7 2.4994 -5.3358 2.2796 14 14 0.1529 -5.1482 0.8186 15 1 -0.0903 -6.5433 1.2659 16 1 0.2072 -5.1070 -0.6648 17 1 -0.9485 -4.2751 1.2981 18 1 -0.3634 0.0033 1.0277 19 1 -0.3633 0.8884 -0.5167 20 1 -0.3634 -0.8916 -0.5110 21 1 1.7795 2.1329 0.0007 22 1 3.2970 -3.1903 -1.3107 23 1 1.9403 -4.3352 -1.1822 24 1 1.7551 -2.8385 -2.1276 25 1 3.3755 -5.0499 2.5825 RHF calculation, no. of doubly occupied orbitals= 33 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260633011.mol2 25 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:05:31 Heat of formation + Delta-G solvation = 0.637114 kcal Electronic energy + Delta-G solvation = -10461.710154 eV Core-core repulsion = 8565.475068 eV Total energy + Delta-G solvation = -1896.235086 eV No. of doubly occupied orbitals = 33 Molecular weight (most abundant/longest-lived isotopes) = 197.057 amu Computer time = 0.13 seconds Orbital eigenvalues (eV) -40.03013 -36.64065 -34.01380 -32.18749 -28.25228 -26.81224 -25.07980 -22.64022 -19.89925 -19.59911 -18.25907 -16.42354 -15.65152 -15.56925 -15.16557 -14.54747 -14.14858 -13.55465 -13.45010 -13.39162 -13.15937 -12.62354 -12.37396 -12.09910 -11.72893 -11.55802 -11.32649 -11.14048 -10.41779 -10.14711 -9.42956 -8.75115 -6.37338 -0.06905 0.69307 1.10876 1.50488 1.56410 1.63744 1.75537 2.51804 3.00947 3.82864 4.14465 4.35353 4.49403 4.60375 4.76057 4.87665 4.90858 4.95575 5.15837 5.23004 5.40575 5.55620 5.73742 5.93805 6.04156 6.53600 7.37066 8.59467 Molecular weight = 197.06amu Principal moments of inertia in cm(-1) A = 0.045942 B = 0.013313 C = 0.011679 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 609.321744 B = 2102.713245 C = 2396.799876 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.077 4.077 2 C -0.210 4.210 3 C 0.105 3.895 4 N -0.502 5.502 5 S 0.194 5.806 6 C -0.121 4.121 7 C 0.080 3.920 8 H 0.058 0.942 9 C -0.141 4.141 10 C -0.606 4.606 11 H 0.019 0.981 12 C -0.008 4.008 13 N -0.927 5.927 14 Si 1.072 2.928 15 H -0.291 1.291 16 H -0.241 1.241 17 H -0.258 1.258 18 H 0.068 0.932 19 H 0.098 0.902 20 H 0.065 0.935 21 H 0.219 0.781 22 H 0.037 0.963 23 H 0.052 0.948 24 H 0.059 0.941 25 H 0.254 0.746 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.047 9.169 -7.403 13.245 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C -0.226 4.226 3 C -0.094 4.094 4 N -0.321 5.321 5 S 0.347 5.653 6 C -0.250 4.250 7 C 0.059 3.941 8 H 0.076 0.924 9 C -0.199 4.199 10 C -0.644 4.644 11 H 0.037 0.963 12 C -0.207 4.207 13 N -0.561 5.561 14 Si 0.892 3.108 15 H -0.217 1.217 16 H -0.165 1.165 17 H -0.183 1.183 18 H 0.087 0.913 19 H 0.116 0.884 20 H 0.084 0.916 21 H 0.235 0.765 22 H 0.056 0.944 23 H 0.071 0.929 24 H 0.078 0.922 25 H 0.063 0.937 Dipole moment (debyes) X Y Z Total from point charges -4.803 8.065 -7.399 11.952 hybrid contribution -0.003 1.094 0.672 1.284 sum -4.806 9.159 -6.727 12.338 Atomic orbital electron populations 1.20426 0.86474 1.03915 1.02837 1.20511 1.01012 0.90482 1.10561 1.23216 0.88889 1.01435 0.95811 1.76763 1.18986 1.09312 1.27066 1.84020 1.10909 1.00718 1.69618 1.25728 0.98159 1.01290 0.99871 1.17684 0.96826 0.84873 0.94678 0.92419 1.22153 1.00263 1.00483 0.97046 1.21978 1.30129 1.01933 1.10318 0.96296 1.27165 1.05346 0.93098 0.95128 1.70975 1.11628 1.37257 1.36262 0.83727 0.72645 0.76082 0.78300 1.21721 1.16464 1.18302 0.91281 0.88363 0.91604 0.76463 0.94368 0.92856 0.92164 0.93709 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -1.96 9.80 71.24 0.70 -1.26 15 2 C -0.21 -7.03 5.83 -20.68 -0.12 -7.15 15 3 C 0.10 3.21 11.07 84.85 0.94 4.15 15 4 N -0.50 -18.42 12.09 -62.60 -0.76 -19.18 15 5 S 0.19 7.91 23.40 -56.49 -1.32 6.59 15 6 C -0.12 -4.95 5.07 24.97 0.13 -4.82 15 7 C 0.08 3.57 2.19 -12.29 -0.03 3.54 15 8 H 0.06 2.41 5.16 -2.39 -0.01 2.40 15 9 C -0.14 -5.76 8.90 71.98 0.64 -5.12 15 10 C -0.61 -33.19 8.71 25.60 0.22 -32.97 15 11 H 0.02 1.16 7.99 -2.91 -0.02 1.14 15 12 C -0.01 -0.42 5.20 84.66 0.44 0.02 15 13 N -0.93 -56.65 13.70 21.45 0.29 -56.36 15 14 Si 1.07 46.57 26.44 68.60 1.81 48.39 15 15 H -0.29 -12.99 7.11 99.48 0.71 -12.29 15 16 H -0.24 -9.10 6.14 99.48 0.61 -8.49 15 17 H -0.26 -10.23 7.11 99.48 0.71 -9.52 15 18 H 0.07 1.75 8.14 -2.38 -0.02 1.73 15 19 H 0.10 1.74 8.13 -2.38 -0.02 1.72 15 20 H 0.07 1.72 6.88 -2.39 -0.02 1.70 15 21 H 0.22 4.44 8.06 -2.91 -0.02 4.42 15 22 H 0.04 1.58 7.88 -2.39 -0.02 1.56 15 23 H 0.05 2.22 5.47 -2.39 -0.01 2.20 15 24 H 0.06 2.05 8.14 -2.38 -0.02 2.03 15 25 H 0.25 15.89 8.73 -92.71 -0.81 15.08 15 Total: -1.00 -64.48 227.32 4.00 -60.48 By element: Atomic # 1 Polarization: 2.63 SS G_CDS: 1.05 Total: 3.68 kcal Atomic # 6 Polarization: -46.53 SS G_CDS: 2.92 Total: -43.61 kcal Atomic # 7 Polarization: -75.07 SS G_CDS: -0.46 Total: -75.53 kcal Atomic # 14 Polarization: 46.57 SS G_CDS: 1.81 Total: 48.39 kcal Atomic # 16 Polarization: 7.91 SS G_CDS: -1.32 Total: 6.59 kcal Total: -64.48 4.00 -60.48 kcal The number of atoms in the molecule is 25 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260633011.mol2 25 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 61.122 kcal (2) G-P(sol) polarization free energy of solvation -64.483 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -3.361 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.999 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.485 kcal (6) G-S(sol) free energy of system = (1) + (5) 0.637 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.13 seconds