Wall clock time and date at job start Mon Mar 30 2020 02:08:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.52997 * 109.47236 * 2 1 4 4 H 1.09002 * 109.47153 * 304.99767 * 3 2 1 5 5 C 1.50699 * 109.47078 * 184.99974 * 3 2 1 6 6 H 1.08000 * 119.99792 * 239.99917 * 5 3 2 7 7 C 1.37878 * 119.99902 * 59.99463 * 5 3 2 8 8 N 1.31515 * 120.00126 * 0.02562 * 7 5 3 9 9 Si 1.86803 * 119.99745 * 180.02562 * 7 5 3 10 10 H 1.48500 * 109.47256 * 90.00491 * 9 7 5 11 11 H 1.48506 * 109.46930 * 210.00332 * 9 7 5 12 12 H 1.48499 * 109.47104 * 330.00193 * 9 7 5 13 13 C 1.50701 * 109.47212 * 64.99766 * 3 2 1 14 14 N 1.29025 * 124.91678 * 240.00083 * 13 3 2 15 15 C 1.31783 * 117.12255 * 179.97438 * 14 13 3 16 16 C 1.33637 * 114.50147 * 359.97438 * 15 14 13 17 17 S 1.70982 * 124.91352 * 59.69863 * 13 3 2 18 18 H 1.09004 * 109.46741 * 59.99889 * 1 2 3 19 19 H 1.09000 * 109.47403 * 180.02562 * 1 2 3 20 20 H 1.09001 * 109.46917 * 300.00567 * 1 2 3 21 21 H 1.09001 * 109.46917 * 239.99433 * 2 1 3 22 22 H 1.09004 * 109.46741 * 120.00111 * 2 1 3 23 23 H 0.96999 * 120.00073 * 179.97438 * 8 7 5 24 24 H 1.08003 * 122.74627 * 180.02562 * 15 14 13 25 25 H 1.07999 * 126.03493 * 179.97438 * 16 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 1 1.6055 1.9815 -0.8418 5 6 3.5419 1.4442 -0.1238 6 1 4.1472 1.8888 0.6523 7 6 4.1433 0.8782 -1.2279 8 7 3.4062 0.3372 -2.1732 9 14 6.0050 0.8798 -1.3810 10 1 6.5539 -0.3523 -0.7597 11 1 6.3836 0.9211 -2.8164 12 1 6.5576 2.0717 -0.6888 13 6 1.6414 2.1163 1.2877 14 7 0.8996 3.1686 1.3716 15 6 0.6460 3.6301 2.5797 16 6 1.2046 2.9276 3.5699 17 16 2.1005 1.5925 2.8492 18 1 -0.3633 0.5139 -0.8900 19 1 -0.3634 -1.0276 0.0005 20 1 -0.3633 0.5139 0.8899 21 1 1.8933 -0.5139 -0.8899 22 1 1.8933 -0.5139 0.8900 23 1 3.8292 -0.0607 -2.9502 24 1 0.0361 4.5040 2.7552 25 1 1.1194 3.1392 4.6255 RHF calculation, no. of doubly occupied orbitals= 33 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260637641.mol2 25 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:08:52 Heat of formation + Delta-G solvation = 27.294686 kcal Electronic energy + Delta-G solvation = -10462.610989 eV Core-core repulsion = 8567.531862 eV Total energy + Delta-G solvation = -1895.079127 eV No. of doubly occupied orbitals = 33 Molecular weight (most abundant/longest-lived isotopes) = 197.057 amu Computer time = 0.12 seconds Orbital eigenvalues (eV) -38.86463 -35.06737 -31.77462 -29.57641 -27.43546 -24.42979 -22.84792 -20.29403 -19.09588 -17.17562 -16.19901 -15.09790 -14.48063 -13.90204 -13.51242 -12.79933 -12.69309 -12.21091 -11.45281 -11.28451 -10.94769 -10.76571 -10.71581 -10.14417 -9.96910 -9.78113 -9.25201 -8.79739 -8.57530 -8.42626 -8.02202 -6.12609 -4.21123 1.53840 2.18480 2.64312 3.26129 3.32892 3.36726 3.63239 4.34906 5.08253 5.21145 5.66825 6.04470 6.14738 6.20394 6.26606 6.45204 6.81095 6.93197 7.04681 7.18744 7.57026 7.74136 7.92385 8.17473 8.60236 8.79988 9.43932 10.92971 Molecular weight = 197.06amu Principal moments of inertia in cm(-1) A = 0.041531 B = 0.013093 C = 0.011270 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 674.034913 B = 2138.055300 C = 2483.910388 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.115 4.115 3 C 0.111 3.889 4 H 0.061 0.939 5 C -0.518 4.518 6 H 0.060 0.940 7 C 0.068 3.932 8 N -0.884 5.884 9 Si 0.898 3.102 10 H -0.278 1.278 11 H -0.284 1.284 12 H -0.273 1.273 13 C 0.130 3.870 14 N -0.510 5.510 15 C 0.042 3.958 16 C -0.308 4.308 17 S 0.098 5.902 18 H 0.048 0.952 19 H 0.037 0.963 20 H 0.032 0.968 21 H 0.106 0.894 22 H 0.037 0.963 23 H 0.264 0.736 24 H 0.161 0.839 25 H 0.163 0.837 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.841 0.673 7.329 7.889 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.154 4.154 3 C 0.089 3.911 4 H 0.078 0.922 5 C -0.557 4.557 6 H 0.078 0.922 7 C -0.135 4.135 8 N -0.522 5.522 9 Si 0.725 3.275 10 H -0.204 1.204 11 H -0.210 1.210 12 H -0.198 1.198 13 C -0.147 4.147 14 N -0.224 5.224 15 C -0.110 4.110 16 C -0.448 4.448 17 S 0.353 5.647 18 H 0.067 0.933 19 H 0.057 0.943 20 H 0.051 0.949 21 H 0.124 0.876 22 H 0.056 0.944 23 H 0.074 0.926 24 H 0.178 0.822 25 H 0.180 0.820 Dipole moment (debyes) X Y Z Total from point charges -2.436 0.011 7.064 7.473 hybrid contribution 0.404 0.902 0.186 1.006 sum -2.032 0.914 7.251 7.585 Atomic orbital electron populations 1.21842 0.98778 0.99439 1.00375 1.21697 0.92117 0.98323 1.03223 1.17779 0.96302 0.91521 0.85510 0.92164 1.21047 0.89544 1.38807 1.06274 0.92162 1.24907 0.98574 0.94747 0.95264 1.69859 1.35141 1.37807 1.09370 0.86487 0.84971 0.78632 0.77392 1.20394 1.21000 1.19769 1.28298 0.92854 0.93187 1.00408 1.66470 1.17887 1.12913 1.25084 1.21715 1.01248 1.01157 0.86885 1.26834 1.10265 1.03624 1.04067 1.83917 1.49318 1.28501 1.03001 0.93252 0.94348 0.94851 0.87582 0.94415 0.92565 0.82160 0.81973 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.97 9.73 37.16 0.36 -2.61 15 2 C -0.11 -2.65 5.19 -26.73 -0.14 -2.79 15 3 C 0.11 2.78 2.20 -92.92 -0.20 2.57 15 4 H 0.06 1.67 8.14 -51.93 -0.42 1.25 15 5 C -0.52 -13.86 8.42 -34.44 -0.29 -14.15 15 6 H 0.06 1.62 7.74 -52.49 -0.41 1.21 15 7 C 0.07 1.81 5.29 -17.82 -0.09 1.71 15 8 N -0.88 -24.19 11.29 55.43 0.63 -23.56 15 9 Si 0.90 20.72 29.54 -169.99 -5.02 15.70 15 10 H -0.28 -6.31 7.11 56.52 0.40 -5.91 15 11 H -0.28 -6.51 7.11 56.52 0.40 -6.11 15 12 H -0.27 -6.30 7.11 56.52 0.40 -5.90 15 13 C 0.13 2.95 4.96 -13.46 -0.07 2.88 15 14 N -0.51 -11.28 10.54 -11.86 -0.13 -11.41 15 15 C 0.04 0.76 11.35 -19.18 -0.22 0.54 15 16 C -0.31 -5.18 11.37 29.12 0.33 -4.85 15 17 S 0.10 1.89 22.57 -107.50 -2.43 -0.54 15 18 H 0.05 1.00 8.14 -51.93 -0.42 0.58 15 19 H 0.04 0.68 8.14 -51.93 -0.42 0.26 15 20 H 0.03 0.66 7.38 -51.93 -0.38 0.28 15 21 H 0.11 2.69 5.95 -51.93 -0.31 2.38 15 22 H 0.04 0.84 7.75 -51.93 -0.40 0.44 15 23 H 0.26 6.88 8.31 -40.82 -0.34 6.54 15 24 H 0.16 2.35 8.06 -52.48 -0.42 1.93 15 25 H 0.16 2.14 8.06 -52.49 -0.42 1.71 15 LS Contribution 231.44 15.07 3.49 3.49 Total: -1.00 -27.83 231.44 -6.53 -34.36 By element: Atomic # 1 Polarization: 1.40 SS G_CDS: -2.75 Total: -1.35 kcal Atomic # 6 Polarization: -16.38 SS G_CDS: -0.32 Total: -16.70 kcal Atomic # 7 Polarization: -35.47 SS G_CDS: 0.50 Total: -34.97 kcal Atomic # 14 Polarization: 20.72 SS G_CDS: -5.02 Total: 15.70 kcal Atomic # 16 Polarization: 1.89 SS G_CDS: -2.43 Total: -0.54 kcal Total LS contribution 3.49 Total: 3.49 kcal Total: -27.83 -6.53 -34.36 kcal The number of atoms in the molecule is 25 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260637641.mol2 25 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 61.655 kcal (2) G-P(sol) polarization free energy of solvation -27.832 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 33.822 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.528 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.360 kcal (6) G-S(sol) free energy of system = (1) + (5) 27.295 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.12 seconds