Wall clock time and date at job start Mon Mar 30 2020 02:08:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.52997 * 109.47236 * 2 1 4 4 H 1.09002 * 109.47153 * 304.99767 * 3 2 1 5 5 C 1.50699 * 109.47078 * 184.99974 * 3 2 1 6 6 H 1.08000 * 119.99792 * 239.99917 * 5 3 2 7 7 C 1.37878 * 119.99902 * 59.99463 * 5 3 2 8 8 N 1.31515 * 120.00126 * 0.02562 * 7 5 3 9 9 Si 1.86803 * 119.99745 * 180.02562 * 7 5 3 10 10 H 1.48500 * 109.47256 * 90.00491 * 9 7 5 11 11 H 1.48506 * 109.46930 * 210.00332 * 9 7 5 12 12 H 1.48499 * 109.47104 * 330.00193 * 9 7 5 13 13 C 1.50701 * 109.47212 * 64.99766 * 3 2 1 14 14 N 1.29025 * 124.91678 * 240.00083 * 13 3 2 15 15 C 1.31783 * 117.12255 * 179.97438 * 14 13 3 16 16 C 1.33637 * 114.50147 * 359.97438 * 15 14 13 17 17 S 1.70982 * 124.91352 * 59.69863 * 13 3 2 18 18 H 1.09004 * 109.46741 * 59.99889 * 1 2 3 19 19 H 1.09000 * 109.47403 * 180.02562 * 1 2 3 20 20 H 1.09001 * 109.46917 * 300.00567 * 1 2 3 21 21 H 1.09001 * 109.46917 * 239.99433 * 2 1 3 22 22 H 1.09004 * 109.46741 * 120.00111 * 2 1 3 23 23 H 0.96999 * 120.00073 * 179.97438 * 8 7 5 24 24 H 1.08003 * 122.74627 * 180.02562 * 15 14 13 25 25 H 1.07999 * 126.03493 * 179.97438 * 16 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 1 1.6055 1.9815 -0.8418 5 6 3.5419 1.4442 -0.1238 6 1 4.1472 1.8888 0.6523 7 6 4.1433 0.8782 -1.2279 8 7 3.4062 0.3372 -2.1732 9 14 6.0050 0.8798 -1.3810 10 1 6.5539 -0.3523 -0.7597 11 1 6.3836 0.9211 -2.8164 12 1 6.5576 2.0717 -0.6888 13 6 1.6414 2.1163 1.2877 14 7 0.8996 3.1686 1.3716 15 6 0.6460 3.6301 2.5797 16 6 1.2046 2.9276 3.5699 17 16 2.1005 1.5925 2.8492 18 1 -0.3633 0.5139 -0.8900 19 1 -0.3634 -1.0276 0.0005 20 1 -0.3633 0.5139 0.8899 21 1 1.8933 -0.5139 -0.8899 22 1 1.8933 -0.5139 0.8900 23 1 3.8292 -0.0607 -2.9502 24 1 0.0361 4.5040 2.7552 25 1 1.1194 3.1392 4.6255 RHF calculation, no. of doubly occupied orbitals= 33 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260637641.mol2 25 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:08:52 Heat of formation + Delta-G solvation = 10.546603 kcal Electronic energy + Delta-G solvation = -10463.337240 eV Core-core repulsion = 8567.531862 eV Total energy + Delta-G solvation = -1895.805379 eV No. of doubly occupied orbitals = 33 Molecular weight (most abundant/longest-lived isotopes) = 197.057 amu Computer time = 0.14 seconds Orbital eigenvalues (eV) -40.42334 -36.91819 -33.73362 -31.15130 -29.21745 -26.19304 -24.60015 -22.04639 -20.66487 -18.90986 -18.07433 -16.80890 -16.15897 -15.55293 -15.18935 -14.55919 -14.27866 -13.87834 -13.24971 -13.16482 -12.77446 -12.53971 -12.20771 -12.02384 -11.78738 -11.61225 -11.13307 -10.54867 -10.31096 -10.13133 -9.55251 -8.14773 -6.30759 0.02051 0.68878 1.12084 1.43461 1.44307 1.54374 2.10446 2.42693 3.12889 3.61100 4.42688 4.45586 4.51662 4.61306 4.71753 4.75065 5.07148 5.25100 5.31634 5.44895 5.57596 5.77403 5.97019 6.20832 6.73652 7.07344 7.37460 8.90035 Molecular weight = 197.06amu Principal moments of inertia in cm(-1) A = 0.041531 B = 0.013093 C = 0.011270 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 674.034913 B = 2138.055300 C = 2483.910388 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 C -0.108 4.108 3 C 0.114 3.886 4 H 0.016 0.984 5 C -0.535 4.535 6 H 0.054 0.946 7 C 0.023 3.977 8 N -0.909 5.909 9 Si 0.958 3.042 10 H -0.268 1.268 11 H -0.281 1.281 12 H -0.272 1.272 13 C 0.087 3.913 14 N -0.533 5.533 15 C 0.020 3.980 16 C -0.276 4.276 17 S 0.115 5.885 18 H 0.039 0.961 19 H 0.063 0.937 20 H 0.036 0.964 21 H 0.080 0.920 22 H 0.042 0.958 23 H 0.266 0.734 24 H 0.196 0.804 25 H 0.209 0.791 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.739 0.893 9.273 9.710 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.193 4.193 2 C -0.147 4.147 3 C 0.092 3.908 4 H 0.034 0.966 5 C -0.573 4.573 6 H 0.072 0.928 7 C -0.177 4.177 8 N -0.547 5.547 9 Si 0.783 3.217 10 H -0.193 1.193 11 H -0.206 1.206 12 H -0.197 1.197 13 C -0.190 4.190 14 N -0.248 5.248 15 C -0.130 4.130 16 C -0.415 4.415 17 S 0.369 5.631 18 H 0.058 0.942 19 H 0.082 0.918 20 H 0.055 0.945 21 H 0.098 0.902 22 H 0.060 0.940 23 H 0.076 0.924 24 H 0.213 0.787 25 H 0.226 0.774 Dipole moment (debyes) X Y Z Total from point charges -2.344 0.234 9.010 9.313 hybrid contribution 0.327 0.895 -0.322 1.005 sum -2.017 1.129 8.688 8.990 Atomic orbital electron populations 1.21708 0.96583 1.00967 1.00022 1.21529 0.94062 0.97079 1.02014 1.17488 0.95244 0.92193 0.85846 0.96554 1.21293 0.90803 1.38873 1.06377 0.92806 1.25661 1.02736 0.94390 0.94950 1.69981 1.36734 1.38255 1.09725 0.85553 0.79947 0.78799 0.77412 1.19349 1.20617 1.19720 1.27741 0.95422 0.94652 1.01189 1.66425 1.17807 1.12868 1.27723 1.22233 1.02375 1.02619 0.85804 1.27353 1.07194 1.01055 1.05909 1.83736 1.49235 1.29369 1.00780 0.94223 0.91772 0.94511 0.90181 0.93959 0.92446 0.78701 0.77448 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -5.46 9.73 71.98 0.70 -4.76 15 2 C -0.11 -5.09 5.19 30.59 0.16 -4.93 15 3 C 0.11 5.89 2.20 -12.29 -0.03 5.86 15 4 H 0.02 0.97 8.14 -2.39 -0.02 0.95 15 5 C -0.53 -29.26 8.42 25.60 0.22 -29.04 15 6 H 0.05 2.93 7.74 -2.91 -0.02 2.91 15 7 C 0.02 1.24 5.29 84.65 0.45 1.68 15 8 N -0.91 -50.94 11.29 21.45 0.24 -50.70 15 9 Si 0.96 42.69 29.54 68.60 2.03 44.72 15 10 H -0.27 -11.47 7.11 99.48 0.71 -10.76 15 11 H -0.28 -12.26 7.11 99.48 0.71 -11.55 15 12 H -0.27 -12.01 7.11 99.48 0.71 -11.31 15 13 C 0.09 3.94 4.96 88.52 0.44 4.38 15 14 N -0.53 -23.28 10.54 -191.44 -2.02 -25.29 15 15 C 0.02 0.66 11.35 83.66 0.95 1.61 15 16 C -0.28 -8.20 11.37 66.78 0.76 -7.44 15 17 S 0.12 4.23 22.57 -56.49 -1.27 2.95 15 18 H 0.04 1.64 8.14 -2.39 -0.02 1.62 15 19 H 0.06 2.21 8.14 -2.39 -0.02 2.20 15 20 H 0.04 1.43 7.38 -2.39 -0.02 1.41 15 21 H 0.08 4.19 5.95 -2.39 -0.01 4.18 15 22 H 0.04 1.90 7.75 -2.39 -0.02 1.88 15 23 H 0.27 14.10 8.31 -92.71 -0.77 13.33 15 24 H 0.20 5.00 8.06 -2.91 -0.02 4.98 15 25 H 0.21 4.21 8.06 -2.91 -0.02 4.19 15 Total: -1.00 -60.73 231.44 3.79 -56.94 By element: Atomic # 1 Polarization: 2.84 SS G_CDS: 1.17 Total: 4.01 kcal Atomic # 6 Polarization: -36.28 SS G_CDS: 3.64 Total: -32.63 kcal Atomic # 7 Polarization: -74.22 SS G_CDS: -1.78 Total: -76.00 kcal Atomic # 14 Polarization: 42.69 SS G_CDS: 2.03 Total: 44.72 kcal Atomic # 16 Polarization: 4.23 SS G_CDS: -1.27 Total: 2.95 kcal Total: -60.73 3.79 -56.94 kcal The number of atoms in the molecule is 25 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260637641.mol2 25 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 67.489 kcal (2) G-P(sol) polarization free energy of solvation -60.732 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 6.757 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.790 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -56.942 kcal (6) G-S(sol) free energy of system = (1) + (5) 10.547 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.14 seconds