Wall clock time and date at job start Mon Mar 30 2020 02:10:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 H 1.09001 * 109.46744 * 2 1 4 4 N 1.46900 * 109.46974 * 120.00065 * 2 1 3 5 5 C 1.50700 * 109.46751 * 239.99948 * 2 1 3 6 6 C 1.34537 * 124.92353 * 100.00868 * 5 2 1 7 7 C 1.36804 * 115.34122 * 180.30523 * 6 5 2 8 8 C 1.38292 * 114.19821 * 359.49971 * 7 6 5 9 9 C 1.39910 * 125.40685 * 180.21018 * 8 7 6 10 10 H 1.07996 * 120.00233 * 0.27005 * 9 8 7 11 11 C 1.40071 * 119.99708 * 180.27619 * 9 8 7 12 12 N 1.30865 * 120.00133 * 359.97438 * 11 9 8 13 13 Si 1.86802 * 119.99581 * 179.97438 * 11 9 8 14 14 H 1.48497 * 109.47410 * 359.97438 * 13 11 9 15 15 H 1.48496 * 109.47083 * 119.99985 * 13 11 9 16 16 H 1.48502 * 109.46981 * 239.99580 * 13 11 9 17 17 S 1.75792 * 124.92826 * 280.03747 * 5 2 1 18 18 H 1.08995 * 109.47363 * 179.97438 * 1 2 3 19 19 H 1.09000 * 109.46932 * 299.99984 * 1 2 3 20 20 H 1.08999 * 109.47218 * 59.99554 * 1 2 3 21 21 H 1.00907 * 110.99819 * 59.99790 * 4 2 1 22 22 H 1.00891 * 111.00380 * 183.95293 * 4 2 1 23 23 H 1.08002 * 122.32725 * 0.02562 * 6 5 2 24 24 H 1.08001 * 122.90026 * 179.69092 * 7 6 5 25 25 H 0.97007 * 120.00267 * 180.02562 * 12 11 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 7 2.0197 -0.6925 1.1994 5 6 2.0323 -0.7104 -1.2305 6 6 2.4697 -0.1008 -2.3472 7 6 2.8759 -0.9376 -3.3504 8 6 2.7779 -2.2821 -3.0415 9 6 3.1319 -3.3366 -3.8902 10 1 3.5220 -3.1291 -4.8756 11 6 2.9800 -4.6615 -3.4617 12 7 2.5076 -4.9129 -2.2675 13 14 3.4519 -6.0694 -4.5951 14 1 3.9558 -5.5227 -5.8805 15 1 4.5135 -6.8863 -3.9541 16 1 2.2610 -6.9187 -4.8518 17 16 2.1309 -2.4558 -1.4152 18 1 -0.3634 -1.0276 -0.0005 19 1 -0.3633 0.5138 0.8900 20 1 -0.3633 0.5139 -0.8899 21 1 1.6961 -1.6480 1.2227 22 1 3.0261 -0.6502 1.2559 23 1 2.4941 0.9743 -2.4465 24 1 3.2442 -0.5792 -4.3002 25 1 2.4028 -5.8305 -1.9706 RHF calculation, no. of doubly occupied orbitals= 33 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260639992.mol2 25 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:10:09 Heat of formation + Delta-G solvation = -21.605309 kcal Electronic energy + Delta-G solvation = -10262.664084 eV Core-core repulsion = 8365.464493 eV Total energy + Delta-G solvation = -1897.199590 eV No. of doubly occupied orbitals = 33 Molecular weight (most abundant/longest-lived isotopes) = 197.057 amu Computer time = 0.15 seconds Orbital eigenvalues (eV) -38.24007 -36.64749 -35.17792 -30.79918 -29.59255 -26.79336 -23.98251 -21.98589 -20.22783 -19.28226 -17.10230 -16.86953 -16.24978 -15.53990 -14.97382 -14.27164 -14.10253 -13.74458 -13.34166 -13.01774 -12.94949 -12.64725 -12.39964 -12.19742 -11.91526 -11.62703 -11.26390 -10.83264 -9.75751 -9.23504 -8.81488 -8.66693 -6.46191 0.76889 1.35534 1.48044 1.53023 1.66185 2.05322 2.22699 2.25316 3.09436 3.86034 4.29639 4.56358 4.63263 4.84202 4.99263 5.09342 5.17755 5.30767 5.32330 5.64896 5.87183 6.11575 6.16308 6.36428 6.57254 6.63877 6.65968 8.05055 Molecular weight = 197.06amu Principal moments of inertia in cm(-1) A = 0.064453 B = 0.011032 C = 0.009983 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 434.317645 B = 2537.364418 C = 2804.064211 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.129 4.129 2 C 0.181 3.819 3 H 0.076 0.924 4 N -0.834 5.834 5 C -0.404 4.404 6 C -0.079 4.079 7 C -0.386 4.386 8 C 0.001 3.999 9 C -0.426 4.426 10 H 0.091 0.909 11 C 0.014 3.986 12 N -0.807 5.807 13 Si 1.009 2.991 14 H -0.257 1.257 15 H -0.259 1.259 16 H -0.259 1.259 17 S 0.123 5.877 18 H 0.040 0.960 19 H 0.071 0.929 20 H 0.053 0.947 21 H 0.334 0.666 22 H 0.340 0.660 23 H 0.108 0.892 24 H 0.093 0.907 25 H 0.307 0.693 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.889 -0.515 1.889 2.150 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.187 4.187 2 C 0.068 3.932 3 H 0.094 0.906 4 N -0.361 5.361 5 C -0.522 4.522 6 C -0.109 4.109 7 C -0.412 4.412 8 C -0.119 4.119 9 C -0.462 4.462 10 H 0.109 0.891 11 C -0.203 4.203 12 N -0.435 5.435 13 Si 0.828 3.172 14 H -0.181 1.181 15 H -0.183 1.183 16 H -0.184 1.184 17 S 0.381 5.619 18 H 0.059 0.941 19 H 0.090 0.910 20 H 0.072 0.928 21 H 0.146 0.854 22 H 0.152 0.848 23 H 0.126 0.874 24 H 0.112 0.888 25 H 0.120 0.880 Dipole moment (debyes) X Y Z Total from point charges -1.742 -1.250 3.420 4.036 hybrid contribution 1.115 0.222 -2.335 2.597 sum -0.627 -1.028 1.085 1.621 Atomic orbital electron populations 1.21723 0.94237 1.01231 1.01479 1.19524 0.94788 0.95649 0.83248 0.90631 1.59240 1.16258 1.20937 1.39622 1.25829 1.22739 1.00433 1.03225 1.19433 0.99771 0.98324 0.93375 1.19945 1.26670 0.92232 1.02313 1.22257 0.96908 0.96114 0.96648 1.19506 1.34759 0.90559 1.01333 0.89094 1.27142 0.92640 1.03110 0.97428 1.68876 1.31488 1.24826 1.18304 0.84708 0.79163 0.75380 0.77946 1.18082 1.18305 1.18361 1.84048 1.66019 0.99270 1.12544 0.94052 0.90983 0.92786 0.85370 0.84844 0.87409 0.88845 0.88038 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -4.35 9.47 71.98 0.68 -3.67 15 2 C 0.18 6.78 3.79 44.17 0.17 6.94 15 3 H 0.08 2.71 8.12 -2.39 -0.02 2.69 15 4 N -0.83 -28.68 9.15 -171.79 -1.57 -30.26 15 5 C -0.40 -18.47 5.46 24.84 0.14 -18.34 15 6 C -0.08 -3.86 9.99 21.09 0.21 -3.65 15 7 C -0.39 -20.68 10.20 21.95 0.22 -20.46 15 8 C 0.00 0.05 6.19 22.69 0.14 0.19 15 9 C -0.43 -22.64 9.29 23.12 0.21 -22.43 15 10 H 0.09 4.66 7.85 -2.91 -0.02 4.63 15 11 C 0.01 0.68 5.50 85.28 0.47 1.15 15 12 N -0.81 -39.17 10.65 21.86 0.23 -38.94 15 13 Si 1.01 35.68 29.56 68.60 2.03 37.71 15 14 H -0.26 -8.98 7.11 99.48 0.71 -8.27 15 15 H -0.26 -8.66 7.11 99.48 0.71 -7.95 15 16 H -0.26 -8.70 7.11 99.48 0.71 -7.99 15 17 S 0.12 6.11 19.43 -56.49 -1.10 5.01 15 18 H 0.04 1.46 8.14 -2.39 -0.02 1.44 15 19 H 0.07 2.09 8.14 -2.39 -0.02 2.07 15 20 H 0.05 1.80 8.14 -2.39 -0.02 1.78 15 21 H 0.33 11.82 8.30 -89.69 -0.74 11.07 15 22 H 0.34 11.37 9.06 -89.70 -0.81 10.56 15 23 H 0.11 4.68 8.06 -2.91 -0.02 4.66 15 24 H 0.09 4.87 8.06 -2.91 -0.02 4.84 15 25 H 0.31 13.15 8.30 -92.70 -0.77 12.38 15 Total: -1.00 -56.30 232.18 1.48 -54.82 By element: Atomic # 1 Polarization: 32.27 SS G_CDS: -0.35 Total: 31.91 kcal Atomic # 6 Polarization: -62.50 SS G_CDS: 2.24 Total: -60.26 kcal Atomic # 7 Polarization: -67.85 SS G_CDS: -1.34 Total: -69.19 kcal Atomic # 14 Polarization: 35.68 SS G_CDS: 2.03 Total: 37.71 kcal Atomic # 16 Polarization: 6.11 SS G_CDS: -1.10 Total: 5.01 kcal Total: -56.30 1.48 -54.82 kcal The number of atoms in the molecule is 25 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260639992.mol2 25 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 33.218 kcal (2) G-P(sol) polarization free energy of solvation -56.304 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -23.086 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.481 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -54.823 kcal (6) G-S(sol) free energy of system = (1) + (5) -21.605 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.15 seconds