Wall clock time and date at job start Mon Mar 30 2020 02:11:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 S 1.81400 * 1 3 3 C 1.76201 * 102.99746 * 2 1 4 4 C 1.39653 * 126.11393 * 359.97438 * 3 2 1 5 5 C 1.39619 * 107.19011 * 179.97438 * 4 3 2 6 6 C 1.39918 * 126.16060 * 180.02562 * 5 4 3 7 7 H 1.08000 * 120.00217 * 179.97438 * 6 5 4 8 8 C 1.39982 * 119.99605 * 359.96334 * 6 5 4 9 9 N 1.30904 * 120.00181 * 0.02562 * 8 6 5 10 10 Si 1.86803 * 119.99783 * 179.97438 * 8 6 5 11 11 H 1.48499 * 109.47155 * 0.02562 * 10 8 6 12 12 H 1.48501 * 109.46960 * 120.00256 * 10 8 6 13 13 H 1.48504 * 109.47236 * 240.00276 * 10 8 6 14 14 N 1.38049 * 107.68597 * 0.02562 * 5 4 3 15 15 C 1.46499 * 125.67785 * 179.97438 * 14 5 4 16 16 C 1.36466 * 108.64428 * 0.22128 * 14 5 4 17 17 H 1.09000 * 109.47234 * 299.99497 * 1 2 3 18 18 H 1.08996 * 109.47704 * 59.99746 * 1 2 3 19 19 H 1.08998 * 109.47110 * 180.02562 * 1 2 3 20 20 H 1.08000 * 126.40756 * 0.02562 * 4 3 2 21 21 H 0.97006 * 119.99995 * 180.02562 * 9 8 6 22 22 H 1.09002 * 109.47391 * 89.99448 * 15 14 5 23 23 H 1.09001 * 109.46813 * 329.99504 * 15 14 5 24 24 H 1.09004 * 109.47041 * 209.99631 * 15 14 5 25 25 H 1.07995 * 125.64898 * 179.77846 * 16 14 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 16 1.8140 0.0000 0.0000 3 6 2.2103 1.7169 0.0000 4 6 1.2961 2.7726 -0.0005 5 6 2.0344 3.9577 0.0003 6 6 1.5121 5.2557 0.0006 7 1 2.1782 6.1058 0.0017 8 6 0.1262 5.4524 -0.0006 9 7 -0.6812 4.4220 -0.0016 10 14 -0.5712 7.1854 0.0006 11 1 0.5429 8.1673 0.0022 12 1 -1.4042 7.3846 -1.2125 13 1 -1.4067 7.3820 1.2125 14 7 3.3725 3.6182 0.0007 15 6 4.4933 4.5616 0.0010 16 6 3.4774 2.2576 -0.0049 17 1 -0.3634 0.5137 0.8900 18 1 -0.3634 0.5138 -0.8899 19 1 -0.3633 -1.0276 0.0005 20 1 0.2194 2.6882 -0.0006 21 1 -1.6416 4.5584 -0.0028 22 1 4.7710 4.7957 1.0287 23 1 4.1983 5.4764 -0.5130 24 1 5.3446 4.1146 -0.5126 25 1 4.4007 1.6975 -0.0093 RHF calculation, no. of doubly occupied orbitals= 33 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260759730.mol2 25 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:11:16 Heat of formation + Delta-G solvation = 17.756810 kcal Electronic energy + Delta-G solvation = -10385.566239 eV Core-core repulsion = 8490.073519 eV Total energy + Delta-G solvation = -1895.492721 eV No. of doubly occupied orbitals = 33 Molecular weight (most abundant/longest-lived isotopes) = 197.057 amu Computer time = 0.13 seconds Orbital eigenvalues (eV) -40.86473 -35.42998 -33.13339 -30.37326 -29.72946 -26.81918 -26.28871 -21.37584 -20.85292 -18.89895 -17.52809 -16.27787 -16.16490 -15.61781 -14.68396 -14.45776 -14.37179 -14.14863 -13.66837 -13.13558 -13.04198 -12.75078 -12.72398 -12.27487 -12.18792 -11.73145 -11.21394 -10.86730 -10.06934 -8.76635 -8.41539 -7.83819 -6.16314 1.12029 1.30480 1.40704 1.55751 1.82112 1.93620 2.23156 2.46185 2.87153 3.43169 4.28572 4.38581 4.42918 4.57785 4.58948 4.72860 4.96072 5.21364 5.23391 5.70386 5.86171 6.15083 6.28726 6.83427 6.92758 7.23267 7.40445 8.50443 Molecular weight = 197.06amu Principal moments of inertia in cm(-1) A = 0.036799 B = 0.013085 C = 0.009721 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 760.707952 B = 2139.267632 C = 2879.528096 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.113 4.113 2 S -0.147 6.147 3 C -0.175 4.175 4 C -0.315 4.315 5 C 0.185 3.815 6 C -0.481 4.481 7 H 0.077 0.923 8 C 0.024 3.976 9 N -0.836 5.836 10 Si 0.998 3.002 11 H -0.257 1.257 12 H -0.269 1.269 13 H -0.269 1.269 14 N -0.486 5.486 15 C 0.089 3.911 16 C -0.095 4.095 17 H 0.065 0.935 18 H 0.065 0.935 19 H 0.127 0.873 20 H 0.143 0.857 21 H 0.280 0.720 22 H 0.064 0.936 23 H 0.073 0.927 24 H 0.092 0.908 25 H 0.160 0.840 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.403 -0.649 -0.095 2.491 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.282 4.282 2 S 0.087 5.913 3 C -0.294 4.294 4 C -0.341 4.341 5 C 0.073 3.927 6 C -0.516 4.516 7 H 0.095 0.905 8 C -0.188 4.188 9 N -0.465 5.465 10 Si 0.819 3.181 11 H -0.180 1.180 12 H -0.194 1.194 13 H -0.194 1.194 14 N -0.171 5.171 15 C -0.052 4.052 16 C -0.225 4.225 17 H 0.084 0.916 18 H 0.084 0.916 19 H 0.145 0.855 20 H 0.160 0.840 21 H 0.090 0.910 22 H 0.083 0.917 23 H 0.092 0.908 24 H 0.110 0.890 25 H 0.177 0.823 Dipole moment (debyes) X Y Z Total from point charges 3.135 -1.497 -0.092 3.476 hybrid contribution -1.146 1.710 0.019 2.059 sum 1.990 0.213 -0.073 2.002 Atomic orbital electron populations 1.23330 0.93581 1.06618 1.04624 1.83846 1.08136 1.03826 1.95449 1.21343 0.96868 0.95525 1.15667 1.21725 0.98776 0.89884 1.23738 1.18431 0.80664 0.94991 0.98569 1.18788 0.92908 0.91002 1.48945 0.90500 1.26633 0.96592 1.03250 0.92313 1.69862 1.04817 1.33001 1.38801 0.84914 0.78451 0.76191 0.78546 1.18011 1.19373 1.19390 1.44244 1.05950 1.05353 1.61513 1.21811 0.87915 0.92996 1.02496 1.21374 0.96459 0.82863 1.21848 0.91574 0.91554 0.85450 0.83958 0.90975 0.91721 0.90837 0.88950 0.82275 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -4.10 9.67 113.37 1.10 -3.01 15 2 S -0.15 -6.13 22.76 -56.49 -1.29 -7.41 15 3 C -0.18 -8.98 6.37 22.50 0.14 -8.84 15 4 C -0.32 -18.05 9.05 22.95 0.21 -17.85 15 5 C 0.18 10.42 6.67 38.90 0.26 10.68 15 6 C -0.48 -26.31 8.97 23.10 0.21 -26.10 15 7 H 0.08 3.91 7.11 -2.91 -0.02 3.89 15 8 C 0.02 1.25 5.50 85.25 0.47 1.72 15 9 N -0.84 -45.39 10.23 21.84 0.22 -45.17 15 10 Si 1.00 39.14 29.56 68.60 2.03 41.17 15 11 H -0.26 -9.60 7.11 99.48 0.71 -8.90 15 12 H -0.27 -10.17 7.11 99.48 0.71 -9.47 15 13 H -0.27 -10.19 7.11 99.48 0.71 -9.48 15 14 N -0.49 -23.61 3.20 -536.32 -1.71 -25.32 15 15 C 0.09 3.21 10.88 127.77 1.39 4.61 15 16 C -0.09 -4.54 11.47 83.86 0.96 -3.58 15 17 H 0.07 2.55 8.14 -2.39 -0.02 2.53 15 18 H 0.07 2.56 8.14 -2.39 -0.02 2.54 15 19 H 0.13 3.50 8.14 -2.39 -0.02 3.48 15 20 H 0.14 8.52 5.15 -2.91 -0.01 8.50 15 21 H 0.28 13.74 8.30 -92.70 -0.77 12.97 15 22 H 0.06 2.12 8.14 -2.39 -0.02 2.10 15 23 H 0.07 2.60 7.31 -2.39 -0.02 2.58 15 24 H 0.09 2.68 8.14 -2.38 -0.02 2.67 15 25 H 0.16 6.52 8.06 -2.91 -0.02 6.50 15 Total: -1.00 -64.35 232.28 5.16 -59.18 By element: Atomic # 1 Polarization: 18.73 SS G_CDS: 1.18 Total: 19.91 kcal Atomic # 6 Polarization: -47.10 SS G_CDS: 4.73 Total: -42.36 kcal Atomic # 7 Polarization: -69.00 SS G_CDS: -1.49 Total: -70.49 kcal Atomic # 14 Polarization: 39.14 SS G_CDS: 2.03 Total: 41.17 kcal Atomic # 16 Polarization: -6.13 SS G_CDS: -1.29 Total: -7.41 kcal Total: -64.35 5.16 -59.18 kcal The number of atoms in the molecule is 25 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260759730.mol2 25 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 76.939 kcal (2) G-P(sol) polarization free energy of solvation -64.345 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 12.593 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.163 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.182 kcal (6) G-S(sol) free energy of system = (1) + (5) 17.757 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.13 seconds