Wall clock time and date at job start Mon Mar 30 2020 02:17:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30799 * 1 3 3 Si 1.86796 * 120.00510 * 2 1 4 4 H 1.48496 * 109.47134 * 239.99996 * 3 2 1 5 5 H 1.48502 * 109.46895 * 359.97438 * 3 2 1 6 6 H 1.48497 * 109.47113 * 119.99945 * 3 2 1 7 7 C 1.40174 * 119.99708 * 180.02562 * 2 1 3 8 8 H 1.07994 * 120.00182 * 179.97438 * 7 2 1 9 9 C 1.39853 * 119.99912 * 0.02562 * 7 2 1 10 10 C 1.39421 * 126.86993 * 359.95501 * 9 7 2 11 11 N 1.33324 * 107.08135 * 180.02562 * 10 9 7 12 12 C 1.30805 * 109.25289 * 0.02562 * 11 10 9 13 13 C 1.50704 * 125.15196 * 180.26613 * 12 11 10 14 14 C 1.52998 * 109.47298 * 89.68989 * 13 12 11 15 15 C 1.52993 * 109.47531 * 179.97438 * 14 13 12 16 16 O 1.42895 * 109.47471 * 179.97438 * 15 14 13 17 17 O 1.34014 * 109.69162 * 359.97438 * 12 11 10 18 18 H 0.96998 * 119.99508 * 359.97438 * 1 2 3 19 19 H 1.08001 * 126.46262 * 0.07324 * 10 9 7 20 20 H 1.08997 * 109.46775 * 209.69203 * 13 12 11 21 21 H 1.09000 * 109.46975 * 329.69187 * 13 12 11 22 22 H 1.09004 * 109.47090 * 300.00059 * 14 13 12 23 23 H 1.09003 * 109.47261 * 59.99484 * 14 13 12 24 24 H 1.09004 * 109.47062 * 300.00175 * 15 14 13 25 25 H 1.09003 * 109.47189 * 59.99538 * 15 14 13 26 26 H 0.96697 * 114.00080 * 179.97438 * 16 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3080 0.0000 0.0000 3 14 2.2421 1.6176 0.0000 4 1 3.0958 1.6962 -1.2125 5 1 1.2772 2.7464 -0.0006 6 1 3.0958 1.6962 1.2125 7 6 2.0088 -1.2140 -0.0005 8 1 3.0887 -1.2141 -0.0010 9 6 1.3095 -2.4251 -0.0016 10 6 -0.0748 -2.5918 -0.0014 11 7 -0.3112 -3.9039 -0.0022 12 6 0.8276 -4.5474 -0.0023 13 6 0.9769 -6.0470 -0.0088 14 6 1.0232 -6.5487 -1.4534 15 6 1.1754 -8.0710 -1.4601 16 8 1.2181 -8.5396 -2.8093 17 8 1.8415 -3.6710 -0.0022 18 1 -0.4849 0.8401 0.0004 19 1 -0.8158 -1.8061 -0.0015 20 1 1.8999 -6.3224 0.5013 21 1 0.1287 -6.4987 0.5057 22 1 0.1001 -6.2732 -1.9635 23 1 1.8713 -6.0968 -1.9680 24 1 2.0987 -8.3461 -0.9501 25 1 0.3276 -8.5232 -0.9454 26 1 1.3141 -9.4984 -2.8898 RHF calculation, no. of doubly occupied orbitals= 36 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260910659.mol2 26 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:17:26 Heat of formation + Delta-G solvation = -61.008381 kcal Electronic energy + Delta-G solvation = -11952.543836 eV Core-core repulsion = 9610.882729 eV Total energy + Delta-G solvation = -2341.661107 eV No. of doubly occupied orbitals = 36 Molecular weight (most abundant/longest-lived isotopes) = 197.084 amu Computer time = 0.16 seconds Orbital eigenvalues (eV) -40.94582 -37.02943 -34.17378 -33.49817 -32.46105 -29.02377 -26.79772 -23.83246 -21.35730 -20.74418 -19.40961 -17.60522 -17.20839 -15.62208 -15.34228 -14.88261 -14.50199 -13.76120 -13.41284 -12.74566 -12.27738 -12.03878 -11.84049 -11.37046 -11.22350 -10.79023 -10.69033 -10.55243 -10.29269 -9.84677 -9.61409 -9.44138 -8.68265 -7.28281 -6.90186 -4.53010 2.82200 2.97764 3.01616 3.35118 3.75355 4.20651 4.50813 4.73715 5.14101 5.20988 5.34353 5.53441 5.71421 5.97478 6.01142 6.17063 6.55528 6.66458 6.89675 7.23134 7.48890 7.60356 7.68421 8.20111 8.36883 8.59209 8.72476 9.77477 10.05117 Molecular weight = 197.08amu Principal moments of inertia in cm(-1) A = 0.080791 B = 0.007094 C = 0.006861 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 346.490575 B = 3945.773764 C = 4080.233463 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.787 5.787 2 C 0.068 3.932 3 Si 0.941 3.059 4 H -0.263 1.263 5 H -0.274 1.274 6 H -0.263 1.263 7 C -0.423 4.423 8 H 0.084 0.916 9 C 0.142 3.858 10 C -0.173 4.173 11 N -0.457 5.457 12 C 0.014 3.986 13 C 0.014 3.986 14 C -0.117 4.117 15 C 0.077 3.923 16 O -0.576 6.576 17 O -0.243 6.243 18 H 0.286 0.714 19 H 0.193 0.807 20 H 0.069 0.931 21 H 0.082 0.918 22 H 0.073 0.927 23 H 0.069 0.931 24 H 0.044 0.956 25 H 0.046 0.954 26 H 0.374 0.626 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.650 -7.092 -0.664 7.600 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.414 5.414 2 C -0.150 4.150 3 Si 0.765 3.235 4 H -0.187 1.187 5 H -0.199 1.199 6 H -0.187 1.187 7 C -0.453 4.453 8 H 0.102 0.898 9 C 0.089 3.911 10 C -0.319 4.319 11 N -0.185 5.185 12 C -0.185 4.185 13 C -0.025 4.025 14 C -0.156 4.156 15 C -0.001 4.001 16 O -0.380 6.380 17 O -0.135 6.135 18 H 0.097 0.903 19 H 0.209 0.791 20 H 0.088 0.912 21 H 0.100 0.900 22 H 0.092 0.908 23 H 0.087 0.913 24 H 0.063 0.937 25 H 0.064 0.936 26 H 0.220 0.780 Dipole moment (debyes) X Y Z Total from point charges 1.854 -6.676 -0.779 6.972 hybrid contribution 1.035 0.547 0.154 1.180 sum 2.889 -6.129 -0.625 6.804 Atomic orbital electron populations 1.69581 1.07610 1.29605 1.34571 1.25856 0.95083 1.01386 0.92677 0.85818 0.79409 0.78253 0.80042 1.18720 1.19901 1.18724 1.18348 0.94832 0.86909 1.45259 0.89796 1.20730 0.92884 0.81690 0.95824 1.24155 0.95182 0.90712 1.21849 1.69562 1.27674 1.07521 1.13787 1.24481 0.81320 0.92773 1.19881 1.19240 1.02243 0.85303 0.95694 1.21577 1.03776 0.92568 0.97632 1.22244 0.99414 0.95704 0.82694 1.86519 1.97042 1.26984 1.27501 1.84298 1.37721 1.16559 1.74914 0.90253 0.79059 0.91247 0.89967 0.90832 0.91273 0.93738 0.93621 0.77980 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.79 -20.37 10.32 55.56 0.57 -19.79 15 2 C 0.07 1.71 5.50 -17.26 -0.09 1.62 15 3 Si 0.94 18.51 29.56 -169.99 -5.03 13.48 15 4 H -0.26 -5.08 7.11 56.52 0.40 -4.68 15 5 H -0.27 -5.17 7.11 56.52 0.40 -4.77 15 6 H -0.26 -5.07 7.11 56.52 0.40 -4.66 15 7 C -0.42 -11.66 9.45 -38.25 -0.36 -12.02 15 8 H 0.08 2.17 7.85 -52.49 -0.41 1.76 15 9 C 0.14 4.16 7.08 -38.54 -0.27 3.89 15 10 C -0.17 -5.10 10.89 -16.46 -0.18 -5.27 15 11 N -0.46 -12.75 11.23 -10.02 -0.11 -12.86 15 12 C 0.01 0.36 7.55 -12.71 -0.10 0.27 15 13 C 0.01 0.25 5.84 -27.88 -0.16 0.09 15 14 C -0.12 -2.02 5.57 -26.74 -0.15 -2.17 15 15 C 0.08 1.01 7.05 37.15 0.26 1.27 15 16 O -0.58 -7.68 13.66 -35.23 -0.48 -8.16 15 17 O -0.24 -6.82 10.81 3.13 0.03 -6.78 15 18 H 0.29 6.61 8.30 -40.82 -0.34 6.27 15 19 H 0.19 5.69 5.76 -52.49 -0.30 5.39 15 20 H 0.07 1.14 8.14 -51.93 -0.42 0.72 15 21 H 0.08 1.39 8.14 -51.93 -0.42 0.97 15 22 H 0.07 1.39 8.14 -51.93 -0.42 0.97 15 23 H 0.07 1.28 8.14 -51.93 -0.42 0.86 15 24 H 0.04 0.50 8.14 -51.93 -0.42 0.08 15 25 H 0.05 0.52 8.14 -51.93 -0.42 0.10 15 26 H 0.37 2.90 9.12 45.56 0.42 3.31 15 LS Contribution 235.70 15.07 3.55 3.55 Total: -1.00 -32.10 235.70 -4.48 -36.58 By element: Atomic # 1 Polarization: 8.29 SS G_CDS: -1.97 Total: 6.32 kcal Atomic # 6 Polarization: -11.28 SS G_CDS: -1.05 Total: -12.33 kcal Atomic # 7 Polarization: -33.11 SS G_CDS: 0.46 Total: -32.65 kcal Atomic # 8 Polarization: -14.50 SS G_CDS: -0.45 Total: -14.94 kcal Atomic # 14 Polarization: 18.51 SS G_CDS: -5.03 Total: 13.48 kcal Total LS contribution 3.55 Total: 3.55 kcal Total: -32.10 -4.48 -36.58 kcal The number of atoms in the molecule is 26 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260910659.mol2 26 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -24.428 kcal (2) G-P(sol) polarization free energy of solvation -32.097 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -56.525 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.484 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.581 kcal (6) G-S(sol) free energy of system = (1) + (5) -61.008 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.16 seconds