Wall clock time and date at job start Mon Mar 30 2020 02:17:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30799 * 1 3 3 Si 1.86796 * 120.00510 * 2 1 4 4 H 1.48496 * 109.47134 * 239.99996 * 3 2 1 5 5 H 1.48502 * 109.46895 * 359.97438 * 3 2 1 6 6 H 1.48497 * 109.47113 * 119.99945 * 3 2 1 7 7 C 1.40174 * 119.99708 * 180.02562 * 2 1 3 8 8 H 1.07994 * 120.00182 * 179.97438 * 7 2 1 9 9 C 1.39853 * 119.99912 * 0.02562 * 7 2 1 10 10 C 1.39421 * 126.86993 * 359.95501 * 9 7 2 11 11 N 1.33324 * 107.08135 * 180.02562 * 10 9 7 12 12 C 1.30805 * 109.25289 * 0.02562 * 11 10 9 13 13 C 1.50704 * 125.15196 * 180.26613 * 12 11 10 14 14 C 1.52998 * 109.47298 * 89.68989 * 13 12 11 15 15 C 1.52993 * 109.47531 * 179.97438 * 14 13 12 16 16 O 1.42895 * 109.47471 * 179.97438 * 15 14 13 17 17 O 1.34014 * 109.69162 * 359.97438 * 12 11 10 18 18 H 0.96998 * 119.99508 * 359.97438 * 1 2 3 19 19 H 1.08001 * 126.46262 * 0.07324 * 10 9 7 20 20 H 1.08997 * 109.46775 * 209.69203 * 13 12 11 21 21 H 1.09000 * 109.46975 * 329.69187 * 13 12 11 22 22 H 1.09004 * 109.47090 * 300.00059 * 14 13 12 23 23 H 1.09003 * 109.47261 * 59.99484 * 14 13 12 24 24 H 1.09004 * 109.47062 * 300.00175 * 15 14 13 25 25 H 1.09003 * 109.47189 * 59.99538 * 15 14 13 26 26 H 0.96697 * 114.00080 * 179.97438 * 16 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3080 0.0000 0.0000 3 14 2.2421 1.6176 0.0000 4 1 3.0958 1.6962 -1.2125 5 1 1.2772 2.7464 -0.0006 6 1 3.0958 1.6962 1.2125 7 6 2.0088 -1.2140 -0.0005 8 1 3.0887 -1.2141 -0.0010 9 6 1.3095 -2.4251 -0.0016 10 6 -0.0748 -2.5918 -0.0014 11 7 -0.3112 -3.9039 -0.0022 12 6 0.8276 -4.5474 -0.0023 13 6 0.9769 -6.0470 -0.0088 14 6 1.0232 -6.5487 -1.4534 15 6 1.1754 -8.0710 -1.4601 16 8 1.2181 -8.5396 -2.8093 17 8 1.8415 -3.6710 -0.0022 18 1 -0.4849 0.8401 0.0004 19 1 -0.8158 -1.8061 -0.0015 20 1 1.8999 -6.3224 0.5013 21 1 0.1287 -6.4987 0.5057 22 1 0.1001 -6.2732 -1.9635 23 1 1.8713 -6.0968 -1.9680 24 1 2.0987 -8.3461 -0.9501 25 1 0.3276 -8.5232 -0.9454 26 1 1.3141 -9.4984 -2.8898 RHF calculation, no. of doubly occupied orbitals= 36 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260910659.mol2 26 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:17:25 Heat of formation + Delta-G solvation = -87.678399 kcal Electronic energy + Delta-G solvation = -11953.700335 eV Core-core repulsion = 9610.882729 eV Total energy + Delta-G solvation = -2342.817605 eV No. of doubly occupied orbitals = 36 Molecular weight (most abundant/longest-lived isotopes) = 197.084 amu Computer time = 0.17 seconds Orbital eigenvalues (eV) -43.06140 -38.09127 -36.10982 -35.21570 -34.35440 -30.99874 -28.41185 -25.64577 -22.90183 -22.73317 -21.32649 -19.65376 -18.27902 -17.54654 -16.83549 -16.61927 -16.28597 -15.28176 -15.12799 -14.11992 -14.05362 -13.88658 -13.34369 -13.04314 -12.96992 -12.57785 -12.09989 -11.98875 -11.95357 -11.61839 -11.41288 -10.84691 -10.83203 -9.41444 -8.82538 -6.64034 1.01028 1.36227 1.53993 1.61675 2.09685 2.34188 2.66603 3.03861 3.42178 3.85623 4.04234 4.32811 4.43374 4.58680 4.67406 4.74241 4.88211 5.09290 5.18445 5.26031 5.39721 5.54192 6.13383 6.29379 6.43774 6.61438 6.98188 7.63282 8.15734 Molecular weight = 197.08amu Principal moments of inertia in cm(-1) A = 0.080791 B = 0.007094 C = 0.006861 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 346.490575 B = 3945.773764 C = 4080.233463 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.813 5.813 2 C 0.025 3.975 3 Si 1.025 2.975 4 H -0.255 1.255 5 H -0.258 1.258 6 H -0.253 1.253 7 C -0.455 4.455 8 H 0.092 0.908 9 C 0.112 3.888 10 C -0.215 4.215 11 N -0.481 5.481 12 C 0.028 3.972 13 C 0.015 3.985 14 C -0.113 4.113 15 C 0.086 3.914 16 O -0.600 6.600 17 O -0.258 6.258 18 H 0.299 0.701 19 H 0.181 0.819 20 H 0.099 0.901 21 H 0.105 0.895 22 H 0.048 0.952 23 H 0.048 0.952 24 H 0.070 0.930 25 H 0.068 0.932 26 H 0.400 0.600 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.747 -7.430 -0.437 8.333 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.439 5.439 2 C -0.190 4.190 3 Si 0.842 3.158 4 H -0.179 1.179 5 H -0.182 1.182 6 H -0.177 1.177 7 C -0.484 4.484 8 H 0.110 0.890 9 C 0.059 3.941 10 C -0.359 4.359 11 N -0.210 5.210 12 C -0.173 4.173 13 C -0.023 4.023 14 C -0.151 4.151 15 C 0.008 3.992 16 O -0.409 6.409 17 O -0.151 6.151 18 H 0.111 0.889 19 H 0.198 0.802 20 H 0.117 0.883 21 H 0.123 0.877 22 H 0.066 0.934 23 H 0.067 0.933 24 H 0.088 0.912 25 H 0.086 0.914 26 H 0.250 0.750 Dipole moment (debyes) X Y Z Total from point charges 2.914 -7.036 -0.554 7.635 hybrid contribution 0.660 0.551 0.061 0.862 sum 3.574 -6.484 -0.493 7.421 Atomic orbital electron populations 1.69631 1.09379 1.31557 1.33351 1.27120 0.96003 1.04869 0.91020 0.84622 0.78084 0.72624 0.80490 1.17893 1.18190 1.17696 1.18873 0.95581 0.87516 1.46470 0.88958 1.21216 0.93264 0.82666 0.96909 1.24023 0.95362 0.91356 1.25132 1.69529 1.28875 1.07133 1.15414 1.25995 0.80307 0.95158 1.15856 1.19589 1.04769 0.80637 0.97340 1.21449 1.01613 0.96186 0.95901 1.22105 1.01715 0.92214 0.83120 1.86442 1.97192 1.29577 1.27654 1.84306 1.38607 1.16694 1.75454 0.88937 0.80243 0.88258 0.87691 0.93350 0.93284 0.91190 0.91354 0.75010 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.81 -42.73 10.32 21.87 0.23 -42.50 15 2 C 0.03 1.28 5.50 85.32 0.47 1.75 15 3 Si 1.02 36.86 29.56 68.60 2.03 38.89 15 4 H -0.25 -8.83 7.11 99.48 0.71 -8.13 15 5 H -0.26 -8.55 7.11 99.48 0.71 -7.84 15 6 H -0.25 -8.69 7.11 99.48 0.71 -7.99 15 7 C -0.46 -25.59 9.45 23.13 0.22 -25.37 15 8 H 0.09 4.84 7.85 -2.91 -0.02 4.82 15 9 C 0.11 6.80 7.08 22.95 0.16 6.96 15 10 C -0.22 -13.24 10.89 84.75 0.92 -12.32 15 11 N -0.48 -27.61 11.23 -300.12 -3.37 -30.98 15 12 C 0.03 1.45 7.55 88.26 0.67 2.11 15 13 C 0.01 0.52 5.84 29.85 0.17 0.70 15 14 C -0.11 -3.76 5.57 30.59 0.17 -3.59 15 15 C 0.09 1.98 7.05 71.98 0.51 2.48 15 16 O -0.60 -14.47 13.66 -148.98 -2.03 -16.50 15 17 O -0.26 -14.75 10.81 -11.71 -0.13 -14.88 15 18 H 0.30 13.81 8.30 -92.71 -0.77 13.04 15 19 H 0.18 11.26 5.76 -2.91 -0.02 11.24 15 20 H 0.10 2.97 8.14 -2.39 -0.02 2.95 15 21 H 0.10 3.28 8.14 -2.39 -0.02 3.26 15 22 H 0.05 1.83 8.14 -2.38 -0.02 1.81 15 23 H 0.05 1.80 8.14 -2.39 -0.02 1.78 15 24 H 0.07 1.29 8.14 -2.38 -0.02 1.27 15 25 H 0.07 1.29 8.14 -2.39 -0.02 1.27 15 26 H 0.40 4.93 9.12 -74.06 -0.68 4.26 15 Total: -1.00 -72.05 235.70 0.53 -71.51 By element: Atomic # 1 Polarization: 21.22 SS G_CDS: 0.52 Total: 21.74 kcal Atomic # 6 Polarization: -30.57 SS G_CDS: 3.29 Total: -27.28 kcal Atomic # 7 Polarization: -70.33 SS G_CDS: -3.14 Total: -73.48 kcal Atomic # 8 Polarization: -29.22 SS G_CDS: -2.16 Total: -31.38 kcal Atomic # 14 Polarization: 36.86 SS G_CDS: 2.03 Total: 38.89 kcal Total: -72.05 0.53 -71.51 kcal The number of atoms in the molecule is 26 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260910659.mol2 26 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -16.166 kcal (2) G-P(sol) polarization free energy of solvation -72.046 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -88.211 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.533 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.513 kcal (6) G-S(sol) free energy of system = (1) + (5) -87.678 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.17 seconds