Wall clock time and date at job start Mon Mar 30 2020 02:19:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.50696 * 109.47167 * 2 1 4 4 N 1.30322 * 126.75096 * 90.02567 * 3 2 1 5 5 O 1.20905 * 111.78421 * 179.97438 * 4 3 2 6 6 C 1.34167 * 111.50544 * 0.02562 * 5 4 3 7 7 O 1.35422 * 126.86424 * 180.02562 * 6 5 4 8 8 C 1.36392 * 106.27259 * 0.25688 * 6 5 4 9 9 C 1.50693 * 128.03140 * 179.73982 * 8 6 5 10 10 C 1.50705 * 109.47348 * 90.02977 * 9 8 6 11 11 H 1.08003 * 119.99652 * 359.97438 * 10 9 8 12 12 C 1.37870 * 120.00194 * 179.97438 * 10 9 8 13 13 N 1.31509 * 120.00375 * 0.02562 * 12 10 9 14 14 Si 1.86804 * 119.99973 * 179.97438 * 12 10 9 15 15 H 1.48502 * 109.46837 * 0.02562 * 14 12 10 16 16 H 1.48498 * 109.47293 * 119.99876 * 14 12 10 17 17 H 1.48494 * 109.47135 * 240.00229 * 14 12 10 18 18 H 1.09006 * 109.46895 * 300.00168 * 1 2 3 19 19 H 1.08998 * 109.47055 * 59.99998 * 1 2 3 20 20 H 1.09001 * 109.47334 * 180.02562 * 1 2 3 21 21 H 1.09001 * 109.46882 * 239.99341 * 2 1 3 22 22 H 1.08998 * 109.47055 * 120.00002 * 2 1 3 23 23 H 0.96700 * 114.00112 * 0.02562 * 7 6 5 24 24 H 1.09003 * 109.47233 * 210.02932 * 9 8 6 25 25 H 1.09000 * 109.47499 * 330.03080 * 9 8 6 26 26 H 0.96997 * 120.00717 * 180.02562 * 13 12 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0323 1.4208 0.0000 4 7 2.2927 2.1558 1.0442 5 8 2.6824 3.2569 0.7320 6 6 2.7326 3.4012 -0.6010 7 8 3.1229 4.5030 -1.2848 8 6 2.3071 2.2181 -1.1298 9 6 2.1668 1.8482 -2.5838 10 6 3.4578 1.2463 -3.0759 11 1 4.2963 1.1425 -2.4031 12 6 3.5687 0.8282 -4.3850 13 7 2.5480 0.9550 -5.2045 14 14 5.1692 0.0828 -4.9952 15 1 6.1557 0.0525 -3.8856 16 1 4.9203 -1.3009 -5.4734 17 1 5.7038 0.9037 -6.1112 18 1 -0.3633 0.5139 0.8900 19 1 -0.3633 0.5138 -0.8900 20 1 -0.3634 -1.0277 0.0005 21 1 1.8933 -0.5139 -0.8899 22 1 1.8933 -0.5138 0.8900 23 1 3.3861 5.2432 -0.7208 24 1 1.3611 1.1230 -2.6981 25 1 1.9373 2.7410 -3.1655 26 1 2.6257 0.6605 -6.1254 RHF calculation, no. of doubly occupied orbitals= 36 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260988485.mol2 26 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:19:46 Heat of formation + Delta-G solvation = -25.033640 kcal Electronic energy + Delta-G solvation = -12433.944797 eV Core-core repulsion = 10093.843672 eV Total energy + Delta-G solvation = -2340.101125 eV No. of doubly occupied orbitals = 36 Molecular weight (most abundant/longest-lived isotopes) = 197.084 amu Computer time = 0.16 seconds Orbital eigenvalues (eV) -45.78738 -38.93575 -36.96033 -35.08141 -32.95857 -31.72411 -29.53935 -25.82574 -25.16085 -22.48156 -22.18264 -19.38469 -18.86885 -18.28886 -16.93459 -16.46939 -16.08919 -15.23031 -14.73702 -14.62424 -14.39043 -13.98809 -13.59090 -13.45869 -12.76843 -12.64185 -12.45755 -12.20795 -11.91700 -11.65773 -11.56333 -10.70027 -10.57890 -9.44702 -8.17892 -6.30134 0.62127 1.36501 1.40614 1.44212 1.54925 1.67866 2.42884 3.07861 3.12582 3.25885 4.01423 4.28914 4.38422 4.44238 4.64153 4.83648 5.02170 5.14241 5.27579 5.32192 5.44776 5.58274 5.75031 6.19331 6.40217 6.79761 7.36134 7.37710 8.91712 Molecular weight = 197.08amu Principal moments of inertia in cm(-1) A = 0.033393 B = 0.012146 C = 0.010232 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 838.289788 B = 2304.718349 C = 2735.928019 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C -0.046 4.046 3 C 0.050 3.950 4 N -0.385 5.385 5 O 0.059 5.941 6 C 0.152 3.848 7 O -0.408 6.408 8 C -0.218 4.218 9 C 0.110 3.890 10 C -0.525 4.525 11 H 0.047 0.953 12 C 0.008 3.992 13 N -0.927 5.927 14 Si 0.963 3.037 15 H -0.269 1.269 16 H -0.273 1.273 17 H -0.277 1.277 18 H 0.059 0.941 19 H 0.043 0.957 20 H 0.087 0.913 21 H 0.080 0.920 22 H 0.095 0.905 23 H 0.427 0.573 24 H 0.016 0.984 25 H 0.001 0.999 26 H 0.266 0.734 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.622 1.997 8.995 9.235 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.194 4.194 2 C -0.084 4.084 3 C -0.108 4.108 4 N -0.104 5.104 5 O -0.001 6.001 6 C 0.044 3.956 7 O -0.214 6.214 8 C -0.223 4.223 9 C 0.072 3.928 10 C -0.563 4.563 11 H 0.066 0.934 12 C -0.190 4.190 13 N -0.567 5.567 14 Si 0.787 3.213 15 H -0.193 1.193 16 H -0.199 1.199 17 H -0.203 1.203 18 H 0.078 0.922 19 H 0.062 0.938 20 H 0.106 0.894 21 H 0.098 0.902 22 H 0.113 0.887 23 H 0.286 0.714 24 H 0.034 0.966 25 H 0.020 0.980 26 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges -0.821 1.556 9.571 9.732 hybrid contribution 0.888 0.370 -1.073 1.441 sum 0.067 1.926 8.498 8.714 Atomic orbital electron populations 1.21650 0.92729 1.03395 1.01585 1.20029 0.97441 0.86902 1.04009 1.23343 1.00147 0.99679 0.87589 1.73726 1.21480 0.92438 1.22708 1.84756 1.65656 1.28155 1.21537 1.21947 1.00658 0.90934 0.82036 1.85343 1.82048 1.22007 1.31991 1.20765 1.10385 0.92059 0.99091 1.17177 0.96403 0.95107 0.84069 1.21343 0.98600 1.40462 0.95863 0.93427 1.25841 1.00101 0.96254 0.96822 1.70064 1.32287 1.48330 1.06035 0.85436 0.79317 0.78302 0.78225 1.19319 1.19856 1.20265 0.92226 0.93825 0.89368 0.90173 0.88698 0.71438 0.96596 0.98038 0.92520 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.92 9.89 71.98 0.71 -3.21 15 2 C -0.05 -1.55 6.43 29.85 0.19 -1.36 15 3 C 0.05 2.01 6.57 43.45 0.29 2.30 15 4 N -0.38 -14.78 12.06 -49.09 -0.59 -15.37 15 5 O 0.06 2.14 11.20 92.51 1.04 3.17 15 6 C 0.15 5.95 8.71 67.39 0.59 6.54 15 7 O -0.41 -13.47 13.63 -65.11 -0.89 -14.36 15 8 C -0.22 -9.97 5.53 -19.62 -0.11 -10.08 15 9 C 0.11 5.95 5.46 29.10 0.16 6.11 15 10 C -0.52 -30.15 9.09 25.60 0.23 -29.92 15 11 H 0.05 2.74 7.74 -2.91 -0.02 2.71 15 12 C 0.01 0.46 5.46 84.65 0.46 0.93 15 13 N -0.93 -55.35 13.29 21.44 0.28 -55.06 15 14 Si 0.96 44.22 29.54 68.60 2.03 46.24 15 15 H -0.27 -12.05 7.11 99.48 0.71 -11.35 15 16 H -0.27 -12.05 7.11 99.48 0.71 -11.35 15 17 H -0.28 -12.38 7.11 99.48 0.71 -11.67 15 18 H 0.06 1.60 8.14 -2.38 -0.02 1.58 15 19 H 0.04 1.41 8.14 -2.39 -0.02 1.39 15 20 H 0.09 2.04 8.14 -2.39 -0.02 2.03 15 21 H 0.08 3.00 8.14 -2.39 -0.02 2.98 15 22 H 0.09 2.76 8.14 -2.39 -0.02 2.74 15 23 H 0.43 7.38 9.06 -74.06 -0.67 6.71 15 24 H 0.02 0.89 8.14 -2.39 -0.02 0.87 15 25 H 0.00 0.08 8.14 -2.39 -0.02 0.06 15 26 H 0.27 14.81 8.31 -92.71 -0.77 14.04 15 Total: -1.00 -68.24 240.30 4.91 -63.33 By element: Atomic # 1 Polarization: 0.23 SS G_CDS: 0.52 Total: 0.75 kcal Atomic # 6 Polarization: -31.22 SS G_CDS: 2.52 Total: -28.70 kcal Atomic # 7 Polarization: -70.12 SS G_CDS: -0.31 Total: -70.43 kcal Atomic # 8 Polarization: -11.33 SS G_CDS: 0.15 Total: -11.18 kcal Atomic # 14 Polarization: 44.22 SS G_CDS: 2.03 Total: 46.24 kcal Total: -68.24 4.91 -63.33 kcal The number of atoms in the molecule is 26 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260988485.mol2 26 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 38.293 kcal (2) G-P(sol) polarization free energy of solvation -68.237 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -29.944 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.910 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.327 kcal (6) G-S(sol) free energy of system = (1) + (5) -25.034 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.16 seconds