Wall clock time and date at job start Mon Mar 30 2020 02:21:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.52999 * 109.47160 * 2 1 4 4 C 1.52993 * 109.47117 * 120.00162 * 2 1 3 5 5 H 1.09003 * 111.09061 * 309.13238 * 4 2 1 6 6 C 1.52299 * 111.21063 * 184.69283 * 4 2 1 7 7 O 1.20821 * 128.09564 * 62.44484 * 6 4 2 8 8 O 1.34448 * 103.80939 * 242.19030 * 6 4 2 9 9 N 1.20046 * 114.81214 * 359.97438 * 8 6 4 10 10 C 1.30836 * 116.12027 * 0.02562 * 9 8 6 11 11 C 1.39855 * 127.61789 * 179.97438 * 10 9 8 12 12 H 1.08008 * 119.99864 * 172.49037 * 11 10 9 13 13 C 1.40579 * 120.00019 * 352.48473 * 11 10 9 14 14 N 1.30482 * 120.00151 * 0.02562 * 13 11 10 15 15 Si 1.86803 * 119.99974 * 180.02562 * 13 11 10 16 16 H 1.48499 * 109.47085 * 89.99939 * 15 13 11 17 17 H 1.48500 * 109.47058 * 210.00337 * 15 13 11 18 18 H 1.48504 * 109.47144 * 329.99712 * 15 13 11 19 19 H 1.09007 * 109.47175 * 173.39778 * 1 2 3 20 20 H 1.08994 * 109.47389 * 293.40046 * 1 2 3 21 21 H 1.09006 * 109.47272 * 53.40068 * 1 2 3 22 22 H 1.08997 * 109.47294 * 240.00410 * 2 1 3 23 23 H 1.08993 * 109.47375 * 179.97438 * 3 2 1 24 24 H 1.09004 * 109.46969 * 300.00013 * 3 2 1 25 25 H 1.08999 * 109.47267 * 59.99557 * 3 2 1 26 26 H 0.97004 * 120.00575 * 179.97438 * 14 13 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0400 -0.7213 1.2492 5 1 1.5656 -0.3300 2.1492 6 6 3.5578 -0.6446 1.3487 7 8 4.2485 0.3401 1.4633 8 8 3.9489 -1.9293 1.2849 9 7 3.0550 -2.7232 1.1755 10 6 1.8453 -2.2265 1.1343 11 6 0.6396 -2.9245 1.0116 12 1 -0.2999 -2.4012 1.1118 13 6 0.6506 -4.3071 0.7577 14 7 1.7856 -4.9393 0.6370 15 14 -0.9599 -5.2393 0.5931 16 1 -1.3922 -5.2334 -0.8276 17 1 -0.7694 -6.6404 1.0468 18 1 -1.9982 -4.5851 1.4292 19 1 -0.3634 -1.0209 -0.1182 20 1 -0.3634 0.4081 0.9431 21 1 -0.3634 0.6127 -0.8251 22 1 1.8933 -0.5137 -0.8900 23 1 3.1299 1.4425 0.0005 24 1 1.6766 1.9563 -0.8900 25 1 1.6766 1.9564 0.8899 26 1 1.7932 -5.8934 0.4621 RHF calculation, no. of doubly occupied orbitals= 36 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000261040751.mol2 26 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:21:10 Heat of formation + Delta-G solvation = -43.601643 kcal Electronic energy + Delta-G solvation = -12790.456014 eV Core-core repulsion = 10449.549720 eV Total energy + Delta-G solvation = -2340.906294 eV No. of doubly occupied orbitals = 36 Molecular weight (most abundant/longest-lived isotopes) = 197.084 amu Computer time = 0.16 seconds Orbital eigenvalues (eV) -44.14930 -39.28093 -37.42039 -35.63218 -32.73237 -29.58450 -28.76049 -27.64886 -24.07177 -22.22086 -21.34381 -19.19682 -18.17024 -17.74377 -16.75059 -16.49500 -15.66712 -15.00400 -14.74423 -14.21554 -14.13777 -13.45198 -13.26805 -12.93774 -12.90901 -12.78499 -12.70656 -11.90651 -11.81226 -11.75135 -11.34048 -11.33397 -9.92986 -9.86079 -8.60911 -6.70843 0.78729 1.46065 1.47161 1.62752 2.08473 2.22400 2.78159 3.17011 3.31749 3.69997 3.90372 4.17161 4.35961 4.52666 4.72603 4.85299 4.92776 5.00039 5.14194 5.16433 5.27001 5.41799 5.57402 6.21768 6.49141 6.53174 6.73288 8.32823 8.89801 Molecular weight = 197.08amu Principal moments of inertia in cm(-1) A = 0.043395 B = 0.013562 C = 0.010714 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 645.083684 B = 2064.128703 C = 2612.801396 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C -0.053 4.053 3 C -0.146 4.146 4 C -0.152 4.152 5 H 0.131 0.869 6 C 0.381 3.619 7 O -0.499 6.499 8 O -0.082 6.082 9 N -0.476 5.476 10 C 0.149 3.851 11 C -0.420 4.420 12 H 0.123 0.877 13 C 0.020 3.980 14 N -0.781 5.781 15 Si 0.998 3.002 16 H -0.259 1.259 17 H -0.276 1.276 18 H -0.242 1.242 19 H 0.066 0.934 20 H 0.065 0.935 21 H 0.076 0.924 22 H 0.047 0.953 23 H 0.040 0.960 24 H 0.079 0.921 25 H 0.064 0.936 26 H 0.289 0.711 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.592 4.152 -1.716 9.696 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C -0.072 4.072 3 C -0.204 4.204 4 C -0.173 4.173 5 H 0.148 0.852 6 C 0.224 3.776 7 O -0.388 6.388 8 O -0.117 6.117 9 N -0.226 5.226 10 C -0.003 4.003 11 C -0.458 4.458 12 H 0.141 0.859 13 C -0.202 4.202 14 N -0.407 5.407 15 Si 0.817 3.183 16 H -0.184 1.184 17 H -0.201 1.201 18 H -0.165 1.165 19 H 0.085 0.915 20 H 0.084 0.916 21 H 0.095 0.905 22 H 0.066 0.934 23 H 0.059 0.941 24 H 0.098 0.902 25 H 0.083 0.917 26 H 0.100 0.900 Dipole moment (debyes) X Y Z Total from point charges -7.432 3.578 -1.701 8.422 hybrid contribution -0.256 0.096 0.094 0.289 sum -7.688 3.674 -1.608 8.671 Atomic orbital electron populations 1.21891 0.91697 1.03365 1.02805 1.20635 0.98517 0.95280 0.92804 1.21909 1.00773 0.94702 1.02980 1.22224 0.93733 0.97764 1.03600 0.85179 1.26065 0.91783 0.85733 0.73984 1.90485 1.65679 1.33439 1.49241 1.84928 1.35924 1.14195 1.76675 1.73259 0.98074 1.10514 1.40769 1.22632 0.93449 0.88802 0.95462 1.19226 0.91897 0.93010 1.41688 0.85949 1.27239 1.01840 0.98822 0.92306 1.69902 1.30072 1.11254 1.29462 0.84945 0.76360 0.76956 0.80008 1.18377 1.20139 1.16518 0.91507 0.91578 0.90546 0.93410 0.94126 0.90192 0.91674 0.90044 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -4.06 8.81 71.98 0.63 -3.43 15 2 C -0.05 -1.91 2.56 -10.80 -0.03 -1.94 15 3 C -0.15 -4.64 8.75 71.98 0.63 -4.01 15 4 C -0.15 -6.55 2.73 -11.29 -0.03 -6.58 15 5 H 0.13 5.12 8.14 -2.39 -0.02 5.10 15 6 C 0.38 18.91 8.20 71.75 0.59 19.50 15 7 O -0.50 -25.06 15.95 21.42 0.34 -24.72 15 8 O -0.08 -4.60 10.98 91.84 1.01 -3.59 15 9 N -0.48 -27.30 10.11 -46.18 -0.47 -27.77 15 10 C 0.15 7.56 6.43 43.58 0.28 7.84 15 11 C -0.42 -19.72 8.23 23.23 0.19 -19.53 15 12 H 0.12 4.93 6.34 -2.91 -0.02 4.91 15 13 C 0.02 0.92 5.51 85.46 0.47 1.39 15 14 N -0.78 -40.76 12.05 21.93 0.26 -40.50 15 15 Si 1.00 33.91 29.56 68.60 2.03 35.94 15 16 H -0.26 -8.45 7.11 99.48 0.71 -7.75 15 17 H -0.28 -9.38 7.11 99.48 0.71 -8.68 15 18 H -0.24 -7.53 7.11 99.48 0.71 -6.83 15 19 H 0.07 2.10 5.56 -2.38 -0.01 2.09 15 20 H 0.07 1.71 8.14 -2.39 -0.02 1.69 15 21 H 0.08 1.79 8.14 -2.38 -0.02 1.77 15 22 H 0.05 1.91 8.11 -2.39 -0.02 1.89 15 23 H 0.04 1.50 5.96 -2.39 -0.01 1.49 15 24 H 0.08 2.05 8.14 -2.38 -0.02 2.04 15 25 H 0.06 1.89 8.14 -2.39 -0.02 1.87 15 26 H 0.29 13.64 8.29 -92.71 -0.77 12.87 15 Total: -1.00 -62.03 226.14 7.10 -54.93 By element: Atomic # 1 Polarization: 11.28 SS G_CDS: 1.19 Total: 12.47 kcal Atomic # 6 Polarization: -9.49 SS G_CDS: 2.74 Total: -6.76 kcal Atomic # 7 Polarization: -68.06 SS G_CDS: -0.20 Total: -68.27 kcal Atomic # 8 Polarization: -29.66 SS G_CDS: 1.35 Total: -28.31 kcal Atomic # 14 Polarization: 33.91 SS G_CDS: 2.03 Total: 35.94 kcal Total: -62.03 7.10 -54.93 kcal The number of atoms in the molecule is 26 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261040751.mol2 26 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 11.328 kcal (2) G-P(sol) polarization free energy of solvation -62.031 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -50.703 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 7.101 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -54.930 kcal (6) G-S(sol) free energy of system = (1) + (5) -43.602 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.16 seconds