Wall clock time and date at job start Mon Mar 30 2020 01:48:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31510 * 1 3 3 Si 1.86797 * 120.00353 * 2 1 4 4 H 1.48499 * 109.47094 * 269.99976 * 3 2 1 5 5 H 1.48505 * 109.47195 * 29.99857 * 3 2 1 6 6 H 1.48493 * 109.47449 * 149.99822 * 3 2 1 7 7 C 1.37880 * 119.99913 * 179.97438 * 2 1 3 8 8 H 1.07998 * 120.00010 * 179.97438 * 7 2 1 9 9 C 1.50701 * 119.99861 * 0.02562 * 7 2 1 10 10 C 1.50703 * 109.47064 * 179.97438 * 9 7 2 11 11 O 1.21351 * 119.99790 * 359.97438 * 10 9 7 12 12 C 1.46376 * 120.00039 * 179.97438 * 10 9 7 13 13 N 1.30837 * 125.53769 * 359.69529 * 12 10 9 14 14 C 1.30474 * 115.90098 * 179.82020 * 13 12 10 15 15 C 1.34516 * 115.78520 * 0.47268 * 14 13 12 16 16 S 1.71077 * 109.08712 * 359.74767 * 15 14 13 17 17 H 0.97002 * 119.99768 * 359.97438 * 1 2 3 18 18 H 1.09002 * 109.47060 * 299.99817 * 9 7 2 19 19 H 1.09001 * 109.47380 * 59.99905 * 9 7 2 20 20 H 1.08001 * 122.10573 * 180.21675 * 14 13 12 21 21 H 1.07992 * 125.45785 * 179.72242 * 15 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6176 0.0000 4 1 2.4967 2.0463 -1.4001 5 1 1.4467 2.6527 0.7000 6 1 3.5467 1.4401 0.7000 7 6 2.0045 -1.1941 0.0005 8 1 3.0845 -1.1941 0.0001 9 6 1.2509 -2.4992 0.0005 10 6 2.2302 -3.6447 0.0005 11 8 3.4233 -3.4229 0.0001 12 6 1.7423 -5.0247 0.0011 13 7 0.4850 -5.3868 0.0073 14 6 0.2621 -6.6723 0.0029 15 6 1.3555 -7.4558 0.0026 16 16 2.7519 -6.4674 0.0012 17 1 -0.4850 0.8401 0.0004 18 1 0.6239 -2.5567 0.8903 19 1 0.6246 -2.5571 -0.8897 20 1 -0.7374 -7.0816 0.0038 21 1 1.3524 -8.5357 0.0035 RHF calculation, no. of doubly occupied orbitals= 32 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000261043169.mol2 21 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:48:46 Heat of formation + Delta-G solvation = -17.065967 kcal Electronic energy + Delta-G solvation = -9802.965845 eV Core-core repulsion = 7770.130001 eV Total energy + Delta-G solvation = -2032.835844 eV No. of doubly occupied orbitals = 32 Molecular weight (most abundant/longest-lived isotopes) = 197.025 amu Computer time = 0.11 seconds Orbital eigenvalues (eV) -40.90560 -39.74724 -35.14401 -32.19621 -30.64551 -27.67540 -25.48676 -22.76431 -20.12422 -19.17539 -18.40148 -17.20424 -16.66240 -16.33099 -15.62297 -15.35599 -14.82430 -14.28330 -14.12494 -13.26588 -12.84027 -12.59075 -12.46978 -12.09976 -11.50412 -11.20268 -10.69080 -10.62843 -10.45779 -9.92581 -8.24455 -6.35602 -0.88677 0.20249 0.73494 1.10532 1.41083 1.42767 1.55165 2.07452 2.40442 2.95458 3.09629 3.81397 4.29620 4.38840 4.58050 5.08713 5.16563 5.23735 5.68224 6.02310 6.40374 6.72623 6.79915 7.33557 8.87599 Molecular weight = 197.03amu Principal moments of inertia in cm(-1) A = 0.080041 B = 0.008704 C = 0.007884 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 349.737333 B = 3216.123125 C = 3550.715757 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.925 5.925 2 C 0.009 3.991 3 Si 0.970 3.030 4 H -0.270 1.270 5 H -0.275 1.275 6 H -0.269 1.269 7 C -0.549 4.549 8 H 0.063 0.937 9 C 0.004 3.996 10 C 0.437 3.563 11 O -0.474 6.474 12 C -0.083 4.083 13 N -0.433 5.433 14 C 0.006 3.994 15 C -0.244 4.244 16 S 0.242 5.758 17 H 0.268 0.732 18 H 0.043 0.957 19 H 0.043 0.957 20 H 0.208 0.792 21 H 0.230 0.770 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.119 -15.060 -0.016 15.209 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.564 5.564 2 C -0.190 4.190 3 Si 0.794 3.206 4 H -0.195 1.195 5 H -0.200 1.200 6 H -0.194 1.194 7 C -0.587 4.587 8 H 0.082 0.918 9 C -0.035 4.035 10 C 0.313 3.687 11 O -0.349 6.349 12 C -0.352 4.352 13 N -0.152 5.152 14 C -0.152 4.152 15 C -0.384 4.384 16 S 0.497 5.503 17 H 0.077 0.923 18 H 0.061 0.939 19 H 0.061 0.939 20 H 0.224 0.776 21 H 0.246 0.754 Dipole moment (debyes) X Y Z Total from point charges 3.329 -14.592 -0.007 14.967 hybrid contribution -0.948 0.529 -0.008 1.086 sum 2.381 -14.063 -0.015 14.263 Atomic orbital electron populations 1.70082 1.07485 1.28188 1.50654 1.25899 0.95843 1.03116 0.94181 0.85379 0.78495 0.78081 0.78689 1.19503 1.19970 1.19352 1.21475 0.93945 0.91241 1.52071 0.91835 1.19192 0.94496 0.90987 0.98832 1.22182 0.89887 0.87595 0.69057 1.90417 1.19280 1.87006 1.38155 1.28307 0.92720 1.00397 1.13784 1.66836 1.18531 1.19077 1.10783 1.22399 1.02836 0.85977 1.03954 1.27516 0.95571 1.08316 1.07011 1.83774 1.09588 0.96111 1.60794 0.92345 0.93921 0.93943 0.77578 0.75356 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -56.17 13.29 21.45 0.28 -55.88 14 2 C 0.01 0.50 5.46 84.66 0.46 0.96 14 3 Si 0.97 45.62 29.54 68.60 2.03 47.64 14 4 H -0.27 -12.20 7.11 99.48 0.71 -11.50 14 5 H -0.27 -12.32 7.11 99.48 0.71 -11.62 14 6 H -0.27 -12.43 7.11 99.48 0.71 -11.72 14 7 C -0.55 -33.04 8.92 25.60 0.23 -32.81 14 8 H 0.06 3.87 6.75 -2.91 -0.02 3.85 14 9 C 0.00 0.21 5.19 29.10 0.15 0.36 14 10 C 0.44 21.03 7.11 27.81 0.20 21.23 14 11 O -0.47 -24.07 16.04 -3.25 -0.05 -24.12 14 12 C -0.08 -3.20 7.37 86.96 0.64 -2.56 14 13 N -0.43 -15.80 10.41 -190.90 -1.99 -17.79 14 14 C 0.01 0.14 11.25 84.04 0.95 1.09 14 15 C -0.24 -4.69 11.10 66.97 0.74 -3.95 14 16 S 0.24 6.40 23.01 -56.49 -1.30 5.10 14 17 H 0.27 15.15 8.31 -92.71 -0.77 14.38 14 18 H 0.04 2.48 8.14 -2.39 -0.02 2.46 14 19 H 0.04 2.47 8.14 -2.39 -0.02 2.45 14 20 H 0.21 3.62 8.06 -2.91 -0.02 3.60 14 21 H 0.23 2.05 8.06 -2.91 -0.02 2.03 14 Total: -1.00 -70.39 217.46 3.59 -66.81 By element: Atomic # 1 Polarization: -7.32 SS G_CDS: 1.24 Total: -6.07 kcal Atomic # 6 Polarization: -19.05 SS G_CDS: 3.37 Total: -15.68 kcal Atomic # 7 Polarization: -71.97 SS G_CDS: -1.70 Total: -73.67 kcal Atomic # 8 Polarization: -24.07 SS G_CDS: -0.05 Total: -24.12 kcal Atomic # 14 Polarization: 45.62 SS G_CDS: 2.03 Total: 47.64 kcal Atomic # 16 Polarization: 6.40 SS G_CDS: -1.30 Total: 5.10 kcal Total: -70.39 3.59 -66.81 kcal The number of atoms in the molecule is 21 The average number of expansion shells was 14.00 The maximum number of expansion shells was 14 The minimum number of expansion shells was 14 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261043169.mol2 21 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 49.739 kcal (2) G-P(sol) polarization free energy of solvation -70.391 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -20.652 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.586 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.805 kcal (6) G-S(sol) free energy of system = (1) + (5) -17.066 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.11 seconds