Wall clock time and date at job start Mon Mar 30 2020 02:18:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42900 * 1 3 3 C 1.42898 * 114.00187 * 2 1 4 4 H 1.09002 * 109.46914 * 325.14319 * 3 2 1 5 5 C 1.50699 * 109.46900 * 205.14804 * 3 2 1 6 6 H 1.08001 * 119.99669 * 245.22734 * 5 3 2 7 7 C 1.37883 * 119.99973 * 65.23396 * 5 3 2 8 8 N 1.31507 * 120.00032 * 355.02314 * 7 5 3 9 9 Si 1.86805 * 119.99632 * 175.02834 * 7 5 3 10 10 H 1.48500 * 109.47017 * 89.99837 * 9 7 5 11 11 H 1.48498 * 109.46895 * 209.99709 * 9 7 5 12 12 H 1.48495 * 109.47025 * 329.99771 * 9 7 5 13 13 C 1.50697 * 109.46949 * 85.14469 * 3 2 1 14 14 C 1.41378 * 126.80122 * 244.99781 * 13 3 2 15 15 C 1.35453 * 103.98279 * 180.02562 * 14 13 3 16 16 C 1.50700 * 126.77385 * 179.97438 * 15 14 13 17 17 O 1.34038 * 106.44856 * 359.97438 * 15 14 13 18 18 N 1.20930 * 111.56498 * 359.71852 * 17 15 14 19 19 H 1.08996 * 109.47231 * 64.97756 * 1 2 3 20 20 H 1.09003 * 109.47134 * 184.98184 * 1 2 3 21 21 H 1.08997 * 109.47003 * 304.97640 * 1 2 3 22 22 H 0.97007 * 120.00002 * 180.02562 * 8 7 5 23 23 H 1.07994 * 128.00886 * 359.96522 * 14 13 3 24 24 H 1.08998 * 109.47587 * 89.99802 * 16 15 14 25 25 H 1.09002 * 109.46639 * 209.99369 * 16 15 14 26 26 H 1.09004 * 109.47026 * 329.99050 * 16 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0103 1.3054 0.0000 4 1 1.3877 1.9803 -0.5874 5 6 3.3895 1.2411 -0.6038 6 1 4.2557 1.4569 0.0042 7 6 3.5456 0.9069 -1.9324 8 7 2.5015 0.5492 -2.6474 9 14 5.2402 0.9621 -2.7164 10 1 5.8997 -0.3596 -2.5632 11 1 5.1075 1.2847 -4.1598 12 1 6.0605 2.0049 -2.0495 13 6 2.1047 1.8132 1.4157 14 6 1.4197 2.9210 1.9656 15 6 1.8409 2.9604 3.2524 16 6 1.4257 3.9529 4.3076 17 8 2.6999 1.9423 3.4019 18 7 2.8287 1.3151 2.3760 19 1 -0.3633 0.4347 -0.9312 20 1 -0.3633 -1.0238 0.0892 21 1 -0.3633 0.5891 0.8420 22 1 2.6113 0.3137 -3.5821 23 1 0.7229 3.5831 1.4734 24 1 0.5490 3.5772 4.8350 25 1 2.2427 4.0939 5.0153 26 1 1.1853 4.9057 3.8357 RHF calculation, no. of doubly occupied orbitals= 36 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000261149726.mol2 26 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:18:19 Heat of formation + Delta-G solvation = 10.195834 kcal Electronic energy + Delta-G solvation = -12472.698777 eV Core-core repulsion = 10134.125317 eV Total energy + Delta-G solvation = -2338.573460 eV No. of doubly occupied orbitals = 36 Molecular weight (most abundant/longest-lived isotopes) = 197.084 amu Computer time = 0.14 seconds Orbital eigenvalues (eV) -44.12818 -36.64929 -33.42604 -32.77475 -32.27070 -27.87891 -27.32777 -25.06111 -23.45852 -22.19802 -19.14943 -17.09255 -16.62062 -16.32154 -14.95271 -14.75821 -14.09101 -13.53833 -13.31091 -13.28724 -13.06628 -12.22149 -11.99050 -11.59683 -10.98244 -10.83833 -10.54658 -10.27658 -9.99481 -9.37739 -9.12612 -8.65133 -8.63592 -8.24196 -6.11708 -4.22190 2.13166 3.10526 3.30607 3.36213 3.40564 3.76093 4.37219 4.97708 5.11322 5.20597 5.50714 5.51036 5.69716 5.80298 5.90790 6.15649 6.26029 6.34817 6.48479 6.59519 6.89313 7.05763 7.82650 8.08059 8.73990 8.92109 9.20277 9.47237 10.96690 Molecular weight = 197.08amu Principal moments of inertia in cm(-1) A = 0.042022 B = 0.011370 C = 0.009736 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 666.156881 B = 2462.083475 C = 2875.273496 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.035 3.965 2 O -0.363 6.363 3 C 0.285 3.715 4 H 0.041 0.959 5 C -0.516 4.516 6 H 0.065 0.935 7 C 0.077 3.923 8 N -0.864 5.864 9 Si 0.901 3.099 10 H -0.277 1.277 11 H -0.284 1.284 12 H -0.272 1.272 13 C 0.030 3.970 14 C -0.234 4.234 15 C -0.066 4.066 16 C -0.065 4.065 17 O 0.084 5.916 18 N -0.348 5.348 19 H 0.033 0.967 20 H 0.060 0.940 21 H 0.013 0.987 22 H 0.264 0.736 23 H 0.161 0.839 24 H 0.079 0.921 25 H 0.076 0.924 26 H 0.084 0.916 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.087 6.135 8.327 11.121 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.062 4.062 2 O -0.280 6.280 3 C 0.228 3.772 4 H 0.059 0.941 5 C -0.554 4.554 6 H 0.084 0.916 7 C -0.130 4.130 8 N -0.501 5.501 9 Si 0.728 3.272 10 H -0.203 1.203 11 H -0.209 1.209 12 H -0.196 1.196 13 C -0.130 4.130 14 C -0.256 4.256 15 C -0.130 4.130 16 C -0.122 4.122 17 O 0.019 5.981 18 N -0.054 5.054 19 H 0.052 0.948 20 H 0.078 0.922 21 H 0.031 0.969 22 H 0.073 0.927 23 H 0.179 0.821 24 H 0.098 0.902 25 H 0.095 0.905 26 H 0.103 0.897 Dipole moment (debyes) X Y Z Total from point charges -3.205 4.870 8.236 10.091 hybrid contribution -0.017 0.798 -0.777 1.114 sum -3.222 5.668 7.459 9.907 Atomic orbital electron populations 1.22463 0.85850 0.99897 0.98040 1.88316 1.15587 1.30392 1.93749 1.18259 0.95296 0.82487 0.81153 0.94126 1.20966 0.90877 1.48939 0.94616 0.91632 1.25061 0.97323 0.93494 0.97076 1.70017 1.29638 1.42177 1.08223 0.86446 0.83798 0.78742 0.78187 1.20262 1.20929 1.19623 1.25124 0.93791 0.94003 1.00070 1.22500 1.06387 1.02654 0.94011 1.24342 0.96515 0.94668 0.97442 1.20174 1.01790 0.94992 0.95277 1.84837 1.49270 1.32504 1.31473 1.73838 1.21096 1.16970 0.93519 0.94833 0.92170 0.96873 0.92672 0.82094 0.90249 0.90478 0.89743 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.78 10.80 101.05 1.09 1.87 15 2 O -0.36 -10.05 9.92 -35.23 -0.35 -10.40 15 3 C 0.28 7.73 2.43 -29.04 -0.07 7.66 15 4 H 0.04 1.12 7.89 -51.93 -0.41 0.71 15 5 C -0.52 -15.19 8.73 -34.44 -0.30 -15.49 15 6 H 0.07 1.96 7.75 -52.49 -0.41 1.55 15 7 C 0.08 2.20 5.43 -17.82 -0.10 2.10 15 8 N -0.86 -25.38 12.96 55.43 0.72 -24.66 15 9 Si 0.90 21.82 29.54 -169.99 -5.02 16.80 15 10 H -0.28 -6.70 7.11 56.52 0.40 -6.30 15 11 H -0.28 -6.65 7.11 56.52 0.40 -6.24 15 12 H -0.27 -6.47 7.11 56.52 0.40 -6.07 15 13 C 0.03 0.72 5.88 -82.10 -0.48 0.24 15 14 C -0.23 -4.47 11.05 -39.38 -0.44 -4.91 15 15 C -0.07 -1.10 7.49 -35.30 -0.26 -1.36 15 16 C -0.06 -0.68 10.45 36.01 0.38 -0.30 15 17 O 0.08 1.71 11.20 17.18 0.19 1.90 15 18 N -0.35 -8.45 12.05 33.42 0.40 -8.05 15 19 H 0.03 0.73 8.14 -51.93 -0.42 0.31 15 20 H 0.06 1.19 8.14 -51.93 -0.42 0.77 15 21 H 0.01 0.26 7.95 -51.93 -0.41 -0.15 15 22 H 0.26 7.25 8.31 -40.82 -0.34 6.92 15 23 H 0.16 2.59 8.06 -52.49 -0.42 2.17 15 24 H 0.08 0.70 8.14 -51.93 -0.42 0.27 15 25 H 0.08 0.69 8.14 -51.93 -0.42 0.27 15 26 H 0.08 0.73 8.14 -51.93 -0.42 0.31 15 LS Contribution 239.91 15.07 3.62 3.62 Total: -1.00 -32.94 239.91 -3.53 -36.47 By element: Atomic # 1 Polarization: -2.59 SS G_CDS: -2.90 Total: -5.49 kcal Atomic # 6 Polarization: -10.00 SS G_CDS: -0.18 Total: -10.18 kcal Atomic # 7 Polarization: -33.83 SS G_CDS: 1.12 Total: -32.71 kcal Atomic # 8 Polarization: -8.34 SS G_CDS: -0.16 Total: -8.50 kcal Atomic # 14 Polarization: 21.82 SS G_CDS: -5.02 Total: 16.80 kcal Total LS contribution 3.62 Total: 3.62 kcal Total: -32.94 -3.53 -36.47 kcal The number of atoms in the molecule is 26 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261149726.mol2 26 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 46.662 kcal (2) G-P(sol) polarization free energy of solvation -32.940 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 13.721 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -3.525 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.466 kcal (6) G-S(sol) free energy of system = (1) + (5) 10.196 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.14 seconds