Wall clock time and date at job start Mon Mar 30 2020 02:18:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42901 * 1 3 3 C 1.42899 * 113.99997 * 2 1 4 4 H 1.08997 * 109.47368 * 30.00066 * 3 2 1 5 5 C 1.50709 * 109.47093 * 149.99600 * 3 2 1 6 6 H 1.08000 * 119.99320 * 119.99766 * 5 3 2 7 7 C 1.37870 * 120.00135 * 299.99873 * 5 3 2 8 8 N 1.31508 * 120.00370 * 180.02562 * 7 5 3 9 9 Si 1.86805 * 119.99928 * 359.97438 * 7 5 3 10 10 H 1.48501 * 109.46992 * 90.00093 * 9 7 5 11 11 H 1.48497 * 109.47179 * 209.99793 * 9 7 5 12 12 H 1.48503 * 109.47270 * 330.00464 * 9 7 5 13 13 C 1.50694 * 109.46940 * 269.99499 * 3 2 1 14 14 C 1.41379 * 126.80522 * 5.00083 * 13 3 2 15 15 C 1.35449 * 103.98950 * 180.02562 * 14 13 3 16 16 C 1.50699 * 126.77908 * 180.26147 * 15 14 13 17 17 O 1.34044 * 106.44438 * 359.97438 * 15 14 13 18 18 N 1.20917 * 111.56675 * 0.02562 * 17 15 14 19 19 H 1.08996 * 109.46870 * 300.00515 * 1 2 3 20 20 H 1.09003 * 109.46848 * 60.00443 * 1 2 3 21 21 H 1.09003 * 109.47069 * 180.02562 * 1 2 3 22 22 H 0.96999 * 120.00748 * 180.02562 * 8 7 5 23 23 H 1.07997 * 128.00412 * 0.05803 * 14 13 3 24 24 H 1.08999 * 109.47622 * 179.70816 * 16 15 14 25 25 H 1.09003 * 109.47419 * 299.71462 * 16 15 14 26 26 H 1.09001 * 109.47113 * 59.71081 * 16 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 1 1.3450 1.9994 0.5138 5 6 3.3387 1.2639 0.7105 6 1 4.2406 1.5419 0.1856 7 6 3.4025 0.8709 2.0305 8 7 4.5616 0.8351 2.6507 9 14 1.8422 0.3907 2.9385 10 1 1.6027 -1.0657 2.7750 11 1 1.9912 0.7089 4.3813 12 1 0.6922 1.1470 2.3809 13 6 2.2146 1.7642 -1.4208 14 6 1.8070 1.0910 -2.5952 15 6 2.2193 1.9028 -3.5979 16 6 2.0389 1.6737 -5.0765 17 8 2.8138 2.9535 -3.0154 18 7 2.8017 2.8590 -1.8099 19 1 -0.3633 0.5139 0.8899 20 1 -0.3633 0.5138 -0.8901 21 1 -0.3633 -1.0277 0.0005 22 1 4.6065 0.5583 3.5793 23 1 1.2867 0.1479 -2.6744 24 1 2.4733 2.5068 -5.6290 25 1 2.5370 0.7478 -5.3641 26 1 0.9758 1.6007 -5.3058 RHF calculation, no. of doubly occupied orbitals= 36 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000261149727.mol2 26 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:18:21 Heat of formation + Delta-G solvation = -6.588298 kcal Electronic energy + Delta-G solvation = -12570.436437 eV Core-core repulsion = 10231.135162 eV Total energy + Delta-G solvation = -2339.301275 eV No. of doubly occupied orbitals = 36 Molecular weight (most abundant/longest-lived isotopes) = 197.084 amu Computer time = 0.15 seconds Orbital eigenvalues (eV) -45.81638 -39.10802 -35.11303 -34.71641 -34.05649 -30.42485 -28.52514 -27.13256 -25.38589 -23.69251 -20.92389 -19.42594 -18.51963 -18.08033 -17.08848 -16.87033 -16.13034 -15.33558 -15.11095 -14.76671 -14.32745 -13.90104 -13.44634 -13.18687 -12.92917 -12.82736 -12.44663 -12.06326 -11.91324 -11.65095 -10.96870 -10.78767 -10.51971 -10.13637 -8.44236 -6.60926 0.67719 1.29336 1.37213 1.41052 1.45924 2.29025 2.42532 2.64091 3.27048 3.61795 3.83171 4.23332 4.40242 4.46321 4.55843 4.64520 4.66417 4.79446 4.80220 4.95778 5.06963 5.29291 5.37594 6.07299 6.38877 6.55597 7.11684 7.55721 8.70163 Molecular weight = 197.08amu Principal moments of inertia in cm(-1) A = 0.050936 B = 0.012070 C = 0.010355 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 549.572666 B = 2319.215587 C = 2703.459458 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.003 3.997 2 O -0.393 6.393 3 C 0.264 3.736 4 H 0.037 0.963 5 C -0.528 4.528 6 H 0.030 0.970 7 C 0.028 3.972 8 N -0.933 5.933 9 Si 0.969 3.031 10 H -0.261 1.261 11 H -0.292 1.292 12 H -0.244 1.244 13 C 0.001 3.999 14 C -0.235 4.235 15 C -0.039 4.039 16 C -0.063 4.063 17 O 0.088 5.912 18 N -0.399 5.399 19 H 0.035 0.965 20 H 0.053 0.947 21 H 0.106 0.894 22 H 0.274 0.726 23 H 0.187 0.813 24 H 0.095 0.905 25 H 0.104 0.896 26 H 0.112 0.888 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.316 -1.346 -12.502 16.917 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.093 4.093 2 O -0.312 6.312 3 C 0.206 3.794 4 H 0.054 0.946 5 C -0.566 4.566 6 H 0.049 0.951 7 C -0.172 4.172 8 N -0.571 5.571 9 Si 0.793 3.207 10 H -0.186 1.186 11 H -0.219 1.219 12 H -0.168 1.168 13 C -0.157 4.157 14 C -0.256 4.256 15 C -0.103 4.103 16 C -0.120 4.120 17 O 0.023 5.977 18 N -0.106 5.106 19 H 0.054 0.946 20 H 0.072 0.928 21 H 0.125 0.875 22 H 0.083 0.917 23 H 0.204 0.796 24 H 0.114 0.886 25 H 0.122 0.878 26 H 0.131 0.869 Dipole moment (debyes) X Y Z Total from point charges -10.535 -0.530 -11.717 15.766 hybrid contribution -0.418 -0.629 0.689 1.022 sum -10.954 -1.159 -11.028 15.587 Atomic orbital electron populations 1.23159 0.81757 1.03894 1.00486 1.88125 1.19849 1.29525 1.93681 1.18116 0.93308 0.82404 0.85533 0.94563 1.20961 0.92203 1.46937 0.96473 0.95126 1.26003 1.00523 0.92708 0.98008 1.70041 1.27275 1.47185 1.12591 0.85505 0.79152 0.80151 0.75914 1.18593 1.21876 1.16847 1.24527 0.98478 0.92316 1.00417 1.22546 1.09287 1.04253 0.89498 1.25441 0.96968 0.87872 1.00020 1.20548 1.05436 1.04910 0.81146 1.84760 1.58975 1.40270 1.13731 1.73778 1.21313 1.22723 0.92770 0.94618 0.92792 0.87538 0.91721 0.79579 0.88602 0.87763 0.86924 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.00 0.10 10.06 113.37 1.14 1.25 15 2 O -0.39 -18.00 7.94 -148.98 -1.18 -19.18 15 3 C 0.26 13.53 2.00 29.10 0.06 13.58 15 4 H 0.04 1.87 6.84 -2.39 -0.02 1.86 15 5 C -0.53 -32.91 9.35 25.60 0.24 -32.67 15 6 H 0.03 2.15 7.98 -2.91 -0.02 2.13 15 7 C 0.03 1.71 5.47 84.65 0.46 2.18 15 8 N -0.93 -60.11 13.96 21.44 0.30 -59.81 15 9 Si 0.97 46.56 25.42 68.60 1.74 48.30 15 10 H -0.26 -12.06 7.11 99.48 0.71 -11.35 15 11 H -0.29 -13.60 7.11 99.48 0.71 -12.90 15 12 H -0.24 -10.66 5.09 99.48 0.51 -10.15 15 13 C 0.00 0.03 6.44 43.57 0.28 0.31 15 14 C -0.23 -8.39 10.01 22.40 0.22 -8.17 15 15 C -0.04 -1.18 7.49 25.04 0.19 -0.99 15 16 C -0.06 -1.00 10.45 71.24 0.74 -0.25 15 17 O 0.09 3.43 11.20 71.60 0.80 4.23 15 18 N -0.40 -19.09 12.05 -49.55 -0.60 -19.68 15 19 H 0.04 1.20 6.23 -2.39 -0.01 1.19 15 20 H 0.05 1.57 7.80 -2.39 -0.02 1.55 15 21 H 0.11 2.87 8.14 -2.39 -0.02 2.85 15 22 H 0.27 16.21 8.31 -92.71 -0.77 15.44 15 23 H 0.19 5.59 8.05 -2.91 -0.02 5.57 15 24 H 0.10 1.22 8.14 -2.39 -0.02 1.20 15 25 H 0.10 1.34 8.14 -2.39 -0.02 1.32 15 26 H 0.11 1.22 8.14 -2.39 -0.02 1.20 15 Total: -1.00 -76.39 228.90 5.38 -71.01 By element: Atomic # 1 Polarization: -1.08 SS G_CDS: 0.98 Total: -0.10 kcal Atomic # 6 Polarization: -28.10 SS G_CDS: 3.34 Total: -24.77 kcal Atomic # 7 Polarization: -79.19 SS G_CDS: -0.30 Total: -79.49 kcal Atomic # 8 Polarization: -14.57 SS G_CDS: -0.38 Total: -14.96 kcal Atomic # 14 Polarization: 46.56 SS G_CDS: 1.74 Total: 48.30 kcal Total: -76.39 5.38 -71.01 kcal The number of atoms in the molecule is 26 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261149727.mol2 26 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 64.425 kcal (2) G-P(sol) polarization free energy of solvation -76.391 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -11.966 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.378 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.013 kcal (6) G-S(sol) free energy of system = (1) + (5) -6.588 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.15 seconds