Wall clock time and date at job start Mon Mar 30 2020 02:14:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31625 * 1 3 3 Si 1.86801 * 120.00024 * 2 1 4 4 H 1.48496 * 109.46951 * 240.00218 * 3 2 1 5 5 H 1.48492 * 109.47151 * 0.02562 * 3 2 1 6 6 H 1.48502 * 109.46735 * 120.00020 * 3 2 1 7 7 C 1.38816 * 119.99547 * 180.02562 * 2 1 3 8 8 H 1.08005 * 119.99225 * 180.02562 * 7 2 1 9 9 N 1.36926 * 120.00259 * 359.97438 * 7 2 1 10 10 C 1.46504 * 120.00068 * 179.97438 * 9 7 2 11 11 C 1.53000 * 109.47102 * 180.02562 * 10 9 7 12 12 H 1.09000 * 109.47474 * 59.99930 * 11 10 9 13 13 O 1.42900 * 109.47211 * 299.99852 * 11 10 9 14 14 C 1.50702 * 109.46785 * 180.02562 * 11 10 9 15 15 C 1.34512 * 125.79146 * 264.99695 * 14 11 10 16 16 C 1.41376 * 106.84688 * 179.75198 * 15 14 11 17 17 C 1.34517 * 106.83881 * 0.37683 * 16 15 14 18 18 O 1.34305 * 125.78962 * 84.97917 * 14 11 10 19 19 H 0.97005 * 120.00052 * 359.97438 * 1 2 3 20 20 H 0.97006 * 120.00232 * 0.02562 * 9 7 2 21 21 H 1.09000 * 109.47013 * 59.99896 * 10 9 7 22 22 H 1.09003 * 109.47290 * 300.00283 * 10 9 7 23 23 H 0.96706 * 113.99859 * 300.00327 * 13 11 10 24 24 H 1.08006 * 126.57585 * 359.97438 * 15 14 11 25 25 H 1.07998 * 126.58562 * 180.23597 * 16 15 14 26 26 H 1.08002 * 125.79423 * 179.89440 * 17 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3163 0.0000 0.0000 3 14 2.2503 1.6177 0.0000 4 1 3.1039 1.6964 -1.2125 5 1 1.2853 2.7464 0.0006 6 1 3.1040 1.6963 1.2125 7 6 2.0102 -1.2022 -0.0005 8 1 3.0903 -1.2022 -0.0001 9 7 1.3256 -2.3880 -0.0005 10 6 2.0580 -3.6568 -0.0017 11 6 1.0637 -4.8197 -0.0021 12 1 0.4367 -4.7614 -0.8917 13 8 0.2426 -4.7448 1.1651 14 6 1.8172 -6.1248 -0.0026 15 6 2.1281 -6.8532 -1.0898 16 6 2.8365 -7.9885 -0.6336 17 6 2.9088 -7.8902 0.7060 18 8 2.2926 -6.7577 1.0824 19 1 -0.4850 0.8401 0.0004 20 1 0.3555 -2.3880 -0.0005 21 1 2.6854 -3.7150 0.8878 22 1 2.6841 -3.7142 -0.8922 23 1 0.7352 -4.7907 1.9961 24 1 1.8864 -6.6146 -2.1151 25 1 3.2399 -8.7834 -1.2433 26 1 3.3858 -8.5992 1.3666 RHF calculation, no. of doubly occupied orbitals= 36 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000261160911.mol2 26 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:14:00 Heat of formation + Delta-G solvation = -23.396383 kcal Electronic energy + Delta-G solvation = -12091.780597 eV Core-core repulsion = 9751.750469 eV Total energy + Delta-G solvation = -2340.030128 eV No. of doubly occupied orbitals = 36 Molecular weight (most abundant/longest-lived isotopes) = 197.084 amu Computer time = 0.15 seconds Orbital eigenvalues (eV) -42.46474 -37.22767 -34.08165 -32.96061 -31.38690 -30.01791 -26.87085 -23.76636 -21.78548 -21.60056 -20.36781 -17.86447 -17.15747 -16.02688 -15.73188 -15.01727 -14.45644 -14.24788 -13.19089 -13.07255 -12.73937 -12.54057 -12.51739 -11.89525 -11.11808 -10.91312 -10.79308 -10.20643 -9.90977 -9.81829 -9.65181 -8.89962 -8.34110 -6.94356 -5.75057 -3.05382 1.82052 2.69845 3.05566 3.45167 3.49174 3.50650 4.55328 4.71098 4.81003 5.10018 5.13098 5.50210 5.57551 5.68774 5.83070 5.99934 6.07070 6.26470 6.52310 6.54361 6.65538 7.21389 7.68698 7.93898 8.42624 9.54276 10.09511 10.46355 11.47130 Molecular weight = 197.08amu Principal moments of inertia in cm(-1) A = 0.075357 B = 0.007302 C = 0.007052 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 371.474618 B = 3833.589056 C = 3969.457766 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.930 5.930 2 C -0.011 4.011 3 Si 0.909 3.091 4 H -0.286 1.286 5 H -0.290 1.290 6 H -0.286 1.286 7 C -0.245 4.245 8 H 0.070 0.930 9 N -0.726 5.726 10 C 0.128 3.872 11 C 0.182 3.818 12 H 0.126 0.874 13 O -0.544 6.544 14 C -0.025 4.025 15 C -0.211 4.211 16 C -0.214 4.214 17 C -0.050 4.050 18 O -0.172 6.172 19 H 0.256 0.744 20 H 0.390 0.610 21 H 0.024 0.976 22 H 0.031 0.969 23 H 0.378 0.622 24 H 0.149 0.851 25 H 0.146 0.854 26 H 0.200 0.800 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.747 -14.304 0.186 15.072 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.578 5.578 2 C -0.207 4.207 3 Si 0.740 3.260 4 H -0.212 1.212 5 H -0.216 1.216 6 H -0.212 1.212 7 C -0.376 4.376 8 H 0.088 0.912 9 N -0.371 5.371 10 C -0.001 4.001 11 C 0.122 3.878 12 H 0.143 0.857 13 O -0.349 6.349 14 C -0.076 4.076 15 C -0.231 4.231 16 C -0.233 4.233 17 C -0.118 4.118 18 O -0.068 6.068 19 H 0.066 0.934 20 H 0.224 0.776 21 H 0.042 0.958 22 H 0.049 0.951 23 H 0.226 0.774 24 H 0.166 0.834 25 H 0.164 0.836 26 H 0.217 0.783 Dipole moment (debyes) X Y Z Total from point charges 4.355 -14.013 0.038 14.675 hybrid contribution 0.841 0.606 0.115 1.043 sum 5.196 -13.407 0.153 14.380 Atomic orbital electron populations 1.69675 1.05102 1.25839 1.57136 1.24764 0.95535 0.97701 1.02731 0.86240 0.78500 0.83403 0.77853 1.21222 1.21616 1.21238 1.19164 0.90978 0.84001 1.43479 0.91250 1.42222 1.06155 0.99234 1.89478 1.21302 0.93378 0.86188 0.99197 1.20868 0.90838 0.85433 0.90652 0.85653 1.86580 1.36512 1.96009 1.15783 1.23644 1.01484 0.97771 0.84742 1.21595 1.05404 0.96378 0.99700 1.21804 1.05560 1.01010 0.94910 1.23996 1.01955 0.89636 0.96164 1.83993 1.56666 1.30800 1.35358 0.93375 0.77553 0.95798 0.95081 0.77417 0.83353 0.83621 0.78328 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -28.58 13.06 55.49 0.72 -27.85 15 2 C -0.01 -0.32 5.50 -17.43 -0.10 -0.41 15 3 Si 0.91 22.61 29.55 -169.99 -5.02 17.58 15 4 H -0.29 -6.96 7.11 56.52 0.40 -6.56 15 5 H -0.29 -7.24 7.11 56.52 0.40 -6.84 15 6 H -0.29 -6.98 7.11 56.52 0.40 -6.58 15 7 C -0.25 -7.00 9.99 -15.06 -0.15 -7.16 15 8 H 0.07 1.91 7.83 -52.48 -0.41 1.50 15 9 N -0.73 -18.88 5.49 -59.91 -0.33 -19.21 15 10 C 0.13 2.64 5.91 -4.04 -0.02 2.62 15 11 C 0.18 3.19 3.51 -27.88 -0.10 3.09 15 12 H 0.13 2.14 8.14 -51.93 -0.42 1.72 15 13 O -0.54 -9.96 13.06 -40.06 -0.52 -10.49 15 14 C -0.03 -0.39 6.20 -35.62 -0.22 -0.62 15 15 C -0.21 -2.99 10.81 -39.71 -0.43 -3.42 15 16 C -0.21 -2.61 10.91 -39.70 -0.43 -3.04 15 17 C -0.05 -0.59 12.09 29.42 0.36 -0.24 15 18 O -0.17 -2.58 10.52 0.86 0.01 -2.57 15 19 H 0.26 7.60 8.31 -40.82 -0.34 7.26 15 20 H 0.39 10.77 7.54 -40.82 -0.31 10.46 15 21 H 0.02 0.51 8.14 -51.93 -0.42 0.08 15 22 H 0.03 0.64 8.14 -51.93 -0.42 0.22 15 23 H 0.38 5.93 8.93 45.56 0.41 6.33 15 24 H 0.15 1.86 8.06 -52.48 -0.42 1.44 15 25 H 0.15 1.37 8.06 -52.49 -0.42 0.95 15 26 H 0.20 1.51 8.06 -52.49 -0.42 1.08 15 LS Contribution 239.14 15.07 3.60 3.60 Total: -1.00 -32.41 239.14 -4.62 -37.02 By element: Atomic # 1 Polarization: 13.06 SS G_CDS: -1.98 Total: 11.08 kcal Atomic # 6 Polarization: -8.08 SS G_CDS: -1.10 Total: -9.17 kcal Atomic # 7 Polarization: -47.46 SS G_CDS: 0.40 Total: -47.06 kcal Atomic # 8 Polarization: -12.54 SS G_CDS: -0.51 Total: -13.06 kcal Atomic # 14 Polarization: 22.61 SS G_CDS: -5.02 Total: 17.58 kcal Total LS contribution 3.60 Total: 3.60 kcal Total: -32.41 -4.62 -37.02 kcal The number of atoms in the molecule is 26 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261160911.mol2 26 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 13.627 kcal (2) G-P(sol) polarization free energy of solvation -32.405 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -18.778 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.618 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.023 kcal (6) G-S(sol) free energy of system = (1) + (5) -23.396 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.15 seconds