Wall clock time and date at job start Mon Mar 30 2020 02:14:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31625 * 1 3 3 Si 1.86801 * 120.00024 * 2 1 4 4 H 1.48496 * 109.46951 * 240.00218 * 3 2 1 5 5 H 1.48492 * 109.47151 * 0.02562 * 3 2 1 6 6 H 1.48502 * 109.46735 * 120.00020 * 3 2 1 7 7 C 1.38816 * 119.99547 * 180.02562 * 2 1 3 8 8 H 1.08005 * 119.99225 * 180.02562 * 7 2 1 9 9 N 1.36926 * 120.00259 * 359.97438 * 7 2 1 10 10 C 1.46504 * 120.00068 * 179.97438 * 9 7 2 11 11 C 1.53000 * 109.47102 * 180.02562 * 10 9 7 12 12 H 1.09000 * 109.47474 * 59.99930 * 11 10 9 13 13 O 1.42900 * 109.47211 * 299.99852 * 11 10 9 14 14 C 1.50702 * 109.46785 * 180.02562 * 11 10 9 15 15 C 1.34512 * 125.79146 * 264.99695 * 14 11 10 16 16 C 1.41376 * 106.84688 * 179.75198 * 15 14 11 17 17 C 1.34517 * 106.83881 * 0.37683 * 16 15 14 18 18 O 1.34305 * 125.78962 * 84.97917 * 14 11 10 19 19 H 0.97005 * 120.00052 * 359.97438 * 1 2 3 20 20 H 0.97006 * 120.00232 * 0.02562 * 9 7 2 21 21 H 1.09000 * 109.47013 * 59.99896 * 10 9 7 22 22 H 1.09003 * 109.47290 * 300.00283 * 10 9 7 23 23 H 0.96706 * 113.99859 * 300.00327 * 13 11 10 24 24 H 1.08006 * 126.57585 * 359.97438 * 15 14 11 25 25 H 1.07998 * 126.58562 * 180.23597 * 16 15 14 26 26 H 1.08002 * 125.79423 * 179.89440 * 17 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3163 0.0000 0.0000 3 14 2.2503 1.6177 0.0000 4 1 3.1039 1.6964 -1.2125 5 1 1.2853 2.7464 0.0006 6 1 3.1040 1.6963 1.2125 7 6 2.0102 -1.2022 -0.0005 8 1 3.0903 -1.2022 -0.0001 9 7 1.3256 -2.3880 -0.0005 10 6 2.0580 -3.6568 -0.0017 11 6 1.0637 -4.8197 -0.0021 12 1 0.4367 -4.7614 -0.8917 13 8 0.2426 -4.7448 1.1651 14 6 1.8172 -6.1248 -0.0026 15 6 2.1281 -6.8532 -1.0898 16 6 2.8365 -7.9885 -0.6336 17 6 2.9088 -7.8902 0.7060 18 8 2.2926 -6.7577 1.0824 19 1 -0.4850 0.8401 0.0004 20 1 0.3555 -2.3880 -0.0005 21 1 2.6854 -3.7150 0.8878 22 1 2.6841 -3.7142 -0.8922 23 1 0.7352 -4.7907 1.9961 24 1 1.8864 -6.6146 -2.1151 25 1 3.2399 -8.7834 -1.2433 26 1 3.3858 -8.5992 1.3666 RHF calculation, no. of doubly occupied orbitals= 36 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000261160911.mol2 26 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:14:00 Heat of formation + Delta-G solvation = -48.206507 kcal Electronic energy + Delta-G solvation = -12092.856444 eV Core-core repulsion = 9751.750469 eV Total energy + Delta-G solvation = -2341.105976 eV No. of doubly occupied orbitals = 36 Molecular weight (most abundant/longest-lived isotopes) = 197.084 amu Computer time = 0.16 seconds Orbital eigenvalues (eV) -43.51618 -38.71890 -36.01835 -34.05249 -33.22151 -31.45768 -28.44781 -25.61593 -23.43134 -22.67522 -21.51308 -19.37972 -18.90533 -17.31418 -16.84168 -16.56293 -16.35369 -15.81765 -14.97135 -14.62974 -14.15490 -13.74483 -13.65235 -13.31648 -13.01101 -12.72587 -12.52381 -12.18019 -11.87670 -11.27791 -10.99849 -10.84312 -9.41820 -9.06275 -7.96033 -5.27447 0.75836 1.47415 1.51174 1.57511 1.69956 2.00895 2.55760 3.33436 3.44043 3.53667 4.01324 4.11423 4.19600 4.24867 4.35911 4.83436 4.85234 4.96020 5.07397 5.16353 5.45305 5.61254 6.16196 6.23737 6.63479 7.31120 8.02776 8.28762 9.26844 Molecular weight = 197.08amu Principal moments of inertia in cm(-1) A = 0.075357 B = 0.007302 C = 0.007052 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 371.474618 B = 3833.589056 C = 3969.457766 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.967 5.967 2 C -0.072 4.072 3 Si 0.979 3.021 4 H -0.276 1.276 5 H -0.294 1.294 6 H -0.277 1.277 7 C -0.255 4.255 8 H 0.076 0.924 9 N -0.739 5.739 10 C 0.130 3.870 11 C 0.195 3.805 12 H 0.125 0.875 13 O -0.559 6.559 14 C -0.057 4.057 15 C -0.209 4.209 16 C -0.224 4.224 17 C -0.040 4.040 18 O -0.189 6.189 19 H 0.253 0.747 20 H 0.378 0.622 21 H 0.024 0.976 22 H 0.036 0.964 23 H 0.387 0.613 24 H 0.159 0.841 25 H 0.175 0.825 26 H 0.242 0.758 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.211 -15.463 0.128 16.664 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.617 5.617 2 C -0.265 4.265 3 Si 0.807 3.193 4 H -0.202 1.202 5 H -0.220 1.220 6 H -0.203 1.203 7 C -0.386 4.386 8 H 0.094 0.906 9 N -0.382 5.382 10 C 0.003 3.997 11 C 0.135 3.865 12 H 0.142 0.858 13 O -0.366 6.366 14 C -0.108 4.108 15 C -0.229 4.229 16 C -0.243 4.243 17 C -0.107 4.107 18 O -0.085 6.085 19 H 0.062 0.938 20 H 0.211 0.789 21 H 0.042 0.958 22 H 0.054 0.946 23 H 0.236 0.764 24 H 0.177 0.823 25 H 0.193 0.807 26 H 0.258 0.742 Dipole moment (debyes) X Y Z Total from point charges 5.856 -15.207 -0.020 16.295 hybrid contribution 0.445 0.818 0.142 0.942 sum 6.301 -14.388 0.122 15.708 Atomic orbital electron populations 1.69842 1.06727 1.26362 1.58779 1.25641 0.96428 1.01277 1.03127 0.85145 0.77169 0.78726 0.78281 1.20152 1.21962 1.20306 1.19596 0.91516 0.85193 1.42336 0.90607 1.42389 1.05811 1.00547 1.89497 1.21409 0.93882 0.85457 0.98987 1.20535 0.90019 0.85554 0.90368 0.85795 1.86543 1.37339 1.96123 1.16550 1.23181 1.03913 0.97994 0.85729 1.21943 1.04408 0.96653 0.99851 1.22193 1.05493 1.01145 0.95466 1.24937 0.99994 0.88638 0.97112 1.83972 1.57218 1.31946 1.35407 0.93823 0.78929 0.95835 0.94647 0.76403 0.82318 0.80715 0.74161 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.97 -60.36 13.06 21.65 0.28 -60.07 15 2 C -0.07 -4.21 5.50 84.86 0.47 -3.75 15 3 Si 0.98 46.50 29.55 68.60 2.03 48.53 15 4 H -0.28 -12.53 7.11 99.48 0.71 -11.83 15 5 H -0.29 -13.98 7.11 99.48 0.71 -13.27 15 6 H -0.28 -12.66 7.11 99.48 0.71 -11.95 15 7 C -0.26 -14.59 9.99 84.04 0.84 -13.75 15 8 H 0.08 4.14 7.83 -2.91 -0.02 4.12 15 9 N -0.74 -38.92 5.49 -343.44 -1.89 -40.80 15 10 C 0.13 5.39 5.91 86.38 0.51 5.90 15 11 C 0.19 6.85 3.51 29.85 0.10 6.95 15 12 H 0.12 4.30 8.14 -2.39 -0.02 4.28 15 13 O -0.56 -20.68 13.06 -144.37 -1.89 -22.57 15 14 C -0.06 -1.75 6.20 24.83 0.15 -1.60 15 15 C -0.21 -5.55 10.81 22.19 0.24 -5.31 15 16 C -0.22 -4.77 10.91 22.19 0.24 -4.53 15 17 C -0.04 -0.82 12.09 66.97 0.81 -0.01 15 18 O -0.19 -5.34 10.52 2.03 0.02 -5.32 15 19 H 0.25 15.24 8.31 -92.70 -0.77 14.47 15 20 H 0.38 21.40 7.54 -92.70 -0.70 20.70 15 21 H 0.02 0.99 8.14 -2.39 -0.02 0.97 15 22 H 0.04 1.45 8.14 -2.39 -0.02 1.43 15 23 H 0.39 12.27 8.93 -74.05 -0.66 11.61 15 24 H 0.16 3.72 8.06 -2.91 -0.02 3.69 15 25 H 0.18 2.59 8.06 -2.91 -0.02 2.56 15 26 H 0.24 2.56 8.06 -2.91 -0.02 2.53 15 Total: -1.00 -68.78 239.14 1.76 -67.01 By element: Atomic # 1 Polarization: 29.49 SS G_CDS: -0.16 Total: 29.32 kcal Atomic # 6 Polarization: -19.46 SS G_CDS: 3.37 Total: -16.10 kcal Atomic # 7 Polarization: -99.28 SS G_CDS: -1.60 Total: -100.88 kcal Atomic # 8 Polarization: -26.02 SS G_CDS: -1.86 Total: -27.88 kcal Atomic # 14 Polarization: 46.50 SS G_CDS: 2.03 Total: 48.53 kcal Total: -68.78 1.76 -67.01 kcal The number of atoms in the molecule is 26 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261160911.mol2 26 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 18.806 kcal (2) G-P(sol) polarization free energy of solvation -68.776 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -49.970 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.764 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.013 kcal (6) G-S(sol) free energy of system = (1) + (5) -48.207 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.16 seconds