Wall clock time and date at job start Mon Mar 30 2020 02:24:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 N 1.46495 * 109.47569 * 2 1 4 4 C 1.33881 * 122.76230 * 269.99846 * 3 2 1 5 5 O 1.21230 * 125.39055 * 0.03965 * 4 3 2 6 6 C 1.51308 * 109.21065 * 179.97438 * 4 3 2 7 7 C 1.54230 * 103.55474 * 0.02562 * 6 4 3 8 8 H 1.08993 * 110.73885 * 241.41579 * 7 6 4 9 9 C 1.50699 * 110.60394 * 118.51365 * 7 6 4 10 10 H 1.07999 * 120.00803 * 4.41311 * 9 7 6 11 11 C 1.37881 * 119.99889 * 184.41132 * 9 7 6 12 12 N 1.31520 * 120.00186 * 180.02562 * 11 9 7 13 13 Si 1.86798 * 120.00030 * 0.02562 * 11 9 7 14 14 H 1.48506 * 109.47297 * 89.99863 * 13 11 9 15 15 H 1.48503 * 109.47261 * 330.00044 * 13 11 9 16 16 H 1.48500 * 109.47454 * 210.00037 * 13 11 9 17 17 C 1.33877 * 122.76682 * 89.99633 * 3 2 1 18 18 O 1.21224 * 125.39158 * 359.97438 * 17 3 2 19 19 H 1.09003 * 109.46890 * 59.99711 * 1 2 3 20 20 H 1.08993 * 109.47476 * 180.02562 * 1 2 3 21 21 H 1.09006 * 109.46429 * 300.00346 * 1 2 3 22 22 H 1.08997 * 109.46920 * 239.99368 * 2 1 3 23 23 H 1.09003 * 109.46890 * 120.00289 * 2 1 3 24 24 H 1.08994 * 110.61016 * 241.48523 * 6 4 3 25 25 H 1.09003 * 110.60380 * 118.51773 * 6 4 3 26 26 H 0.96998 * 120.00124 * 180.02562 * 12 11 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0184 1.3811 0.0000 4 6 2.2600 2.0642 -1.1258 5 8 2.1090 1.6391 -2.2511 6 6 2.7498 3.4512 -0.7713 7 6 2.7501 3.4512 0.7710 8 1 2.0685 4.2091 1.1571 9 6 4.1432 3.6734 1.3011 10 1 4.9550 3.8759 0.6182 11 6 4.3814 3.6184 2.6580 12 7 5.5970 3.8128 3.1208 13 14 2.9775 3.2676 3.8393 14 1 2.8633 1.8022 4.0514 15 1 1.7084 3.7853 3.2676 16 1 3.2444 3.9364 5.1380 17 6 2.2599 2.0643 1.1257 18 8 2.1091 1.6392 2.2510 19 1 -0.3633 0.5139 -0.8900 20 1 -0.3634 -1.0276 0.0005 21 1 -0.3632 0.5139 0.8900 22 1 1.8933 -0.5139 -0.8899 23 1 1.8933 -0.5139 0.8900 24 1 2.0669 4.2090 -1.1551 25 1 3.7575 3.6118 -1.1547 26 1 5.7646 3.7738 4.0753 RHF calculation, no. of doubly occupied orbitals= 36 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000261255030.mol2 26 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:24:29 Heat of formation + Delta-G solvation = -65.243348 kcal Electronic energy + Delta-G solvation = -12889.169231 eV Core-core repulsion = 10547.324482 eV Total energy + Delta-G solvation = -2341.844749 eV No. of doubly occupied orbitals = 36 Molecular weight (most abundant/longest-lived isotopes) = 197.084 amu Computer time = 0.13 seconds Orbital eigenvalues (eV) -41.22096 -38.00757 -35.31666 -34.33963 -32.28756 -29.90765 -26.58194 -24.07332 -23.08066 -20.99223 -18.95857 -17.31002 -16.89947 -15.91045 -15.62840 -14.60699 -14.01512 -13.80944 -13.56191 -13.46842 -13.15952 -12.53255 -12.18298 -12.05679 -11.36122 -11.07194 -10.53395 -10.38458 -10.17069 -9.77621 -9.57402 -9.24516 -9.05413 -8.28899 -6.26509 -4.39123 2.18104 3.07293 3.38081 3.54440 3.61003 3.79648 4.46624 4.83347 4.93327 5.17362 5.28281 5.41450 5.41990 5.58181 5.73742 5.80439 5.95271 6.12159 6.24434 6.40562 6.72354 7.23572 7.48416 7.94115 8.17925 8.49295 8.67498 9.28409 10.80735 Molecular weight = 197.08amu Principal moments of inertia in cm(-1) A = 0.044126 B = 0.015658 C = 0.012630 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 634.397798 B = 1787.812066 C = 2216.429543 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.164 4.164 2 C 0.090 3.910 3 N -0.574 5.574 4 C 0.532 3.468 5 O -0.512 6.512 6 C -0.143 4.143 7 C -0.012 4.012 8 H 0.081 0.919 9 C -0.529 4.529 10 H 0.089 0.911 11 C 0.074 3.926 12 N -0.880 5.880 13 Si 0.944 3.056 14 H -0.265 1.265 15 H -0.288 1.288 16 H -0.321 1.321 17 C 0.510 3.490 18 O -0.485 6.485 19 H 0.058 0.942 20 H 0.069 0.931 21 H 0.060 0.940 22 H 0.086 0.914 23 H 0.088 0.912 24 H 0.104 0.896 25 H 0.119 0.881 26 H 0.270 0.730 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.195 -3.654 -5.052 10.297 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.222 4.222 2 C -0.031 4.031 3 N -0.317 5.317 4 C 0.323 3.677 5 O -0.387 6.387 6 C -0.183 4.183 7 C -0.034 4.034 8 H 0.098 0.902 9 C -0.565 4.565 10 H 0.107 0.893 11 C -0.133 4.133 12 N -0.514 5.514 13 Si 0.782 3.218 14 H -0.193 1.193 15 H -0.216 1.216 16 H -0.252 1.252 17 C 0.305 3.695 18 O -0.361 6.361 19 H 0.077 0.923 20 H 0.088 0.912 21 H 0.079 0.921 22 H 0.104 0.896 23 H 0.107 0.893 24 H 0.122 0.878 25 H 0.137 0.863 26 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges -8.216 -4.124 -4.909 10.422 hybrid contribution -0.579 -0.431 0.687 0.997 sum -8.796 -4.555 -4.222 10.767 Atomic orbital electron populations 1.22068 0.95143 1.02462 1.02505 1.21626 0.95123 0.82384 1.03976 1.47073 1.59528 1.15038 1.10029 1.21152 0.74158 0.89067 0.83293 1.90666 1.51242 1.75198 1.21635 1.22511 1.04549 0.93023 0.98183 1.20110 1.00855 0.90100 0.92317 0.90169 1.20610 0.90548 1.51967 0.93420 0.89347 1.25218 0.96633 0.92576 0.98846 1.69914 1.20494 1.46238 1.14758 0.85633 0.79827 0.78643 0.77706 1.19326 1.21553 1.25223 1.23112 0.72247 0.90930 0.83235 1.90524 1.50561 1.74782 1.20228 0.92262 0.91230 0.92124 0.89600 0.89343 0.87783 0.86337 0.92038 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.21 10.24 37.16 0.38 -1.83 15 2 C 0.09 1.43 6.27 -4.04 -0.03 1.41 15 3 N -0.57 -10.95 2.55 -115.35 -0.29 -11.25 15 4 C 0.53 9.92 8.08 -11.09 -0.09 9.83 15 5 O -0.51 -10.15 17.48 5.60 0.10 -10.05 15 6 C -0.14 -2.53 6.66 -26.94 -0.18 -2.71 15 7 C -0.01 -0.27 2.54 -91.98 -0.23 -0.50 15 8 H 0.08 1.69 7.34 -51.93 -0.38 1.31 15 9 C -0.53 -13.93 9.17 -34.44 -0.32 -14.25 15 10 H 0.09 2.44 7.64 -52.49 -0.40 2.04 15 11 C 0.07 2.08 5.46 -17.82 -0.10 1.98 15 12 N -0.88 -26.11 13.96 55.43 0.77 -25.34 15 13 Si 0.94 24.37 23.58 -169.99 -4.01 20.36 15 14 H -0.27 -7.11 6.02 56.52 0.34 -6.77 15 15 H -0.29 -7.18 6.57 56.52 0.37 -6.80 15 16 H -0.32 -8.24 7.11 56.52 0.40 -7.84 15 17 C 0.51 11.28 7.11 -11.09 -0.08 11.21 15 18 O -0.48 -11.93 11.00 5.61 0.06 -11.87 15 19 H 0.06 0.80 8.14 -51.93 -0.42 0.38 15 20 H 0.07 0.75 8.14 -51.93 -0.42 0.33 15 21 H 0.06 0.87 8.14 -51.93 -0.42 0.45 15 22 H 0.09 1.26 7.83 -51.93 -0.41 0.85 15 23 H 0.09 1.41 7.83 -51.93 -0.41 1.00 15 24 H 0.10 1.50 8.14 -51.93 -0.42 1.07 15 25 H 0.12 2.07 7.47 -51.93 -0.39 1.68 15 26 H 0.27 7.56 8.31 -40.82 -0.34 7.23 15 LS Contribution 222.78 15.07 3.36 3.36 Total: -1.00 -31.16 222.78 -3.55 -34.71 By element: Atomic # 1 Polarization: -2.17 SS G_CDS: -2.90 Total: -5.07 kcal Atomic # 6 Polarization: 5.78 SS G_CDS: -0.64 Total: 5.14 kcal Atomic # 7 Polarization: -37.06 SS G_CDS: 0.48 Total: -36.58 kcal Atomic # 8 Polarization: -22.08 SS G_CDS: 0.16 Total: -21.92 kcal Atomic # 14 Polarization: 24.37 SS G_CDS: -4.01 Total: 20.36 kcal Total LS contribution 3.36 Total: 3.36 kcal Total: -31.16 -3.55 -34.71 kcal The number of atoms in the molecule is 26 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261255030.mol2 26 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -30.530 kcal (2) G-P(sol) polarization free energy of solvation -31.161 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -61.691 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -3.552 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.713 kcal (6) G-S(sol) free energy of system = (1) + (5) -65.243 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.13 seconds