Wall clock time and date at job start Mon Mar 30 2020 01:50:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31512 * 1 3 3 Si 1.86808 * 119.99696 * 2 1 4 4 H 1.48507 * 109.46695 * 269.99598 * 3 2 1 5 5 H 1.48492 * 109.47109 * 29.99915 * 3 2 1 6 6 H 1.48500 * 109.46817 * 150.00049 * 3 2 1 7 7 C 1.37881 * 120.00484 * 179.97438 * 2 1 3 8 8 H 1.08003 * 119.99997 * 180.02562 * 7 2 1 9 9 C 1.50704 * 119.99631 * 359.97438 * 7 2 1 10 10 C 1.50701 * 109.46800 * 180.02562 * 9 7 2 11 11 C 1.38190 * 119.60704 * 125.00235 * 10 9 7 12 12 C 1.38673 * 119.18922 * 180.02562 * 11 10 9 13 13 C 1.38607 * 118.43698 * 0.27914 * 12 11 10 14 14 C 1.38352 * 119.14851 * 359.44895 * 13 12 11 15 15 Cl 1.73609 * 119.63150 * 180.25618 * 14 13 12 16 16 N 1.31875 * 119.60795 * 305.02222 * 10 9 7 17 17 H 0.96991 * 120.00442 * 0.02562 * 1 2 3 18 18 H 1.08995 * 109.46927 * 60.00051 * 9 7 2 19 19 H 1.08995 * 109.47041 * 300.00189 * 9 7 2 20 20 H 1.08000 * 120.40609 * 0.02562 * 11 10 9 21 21 H 1.08002 * 120.77753 * 179.97438 * 12 11 10 22 22 H 1.07999 * 120.42354 * 179.72700 * 13 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6179 0.0000 4 1 2.4966 2.0464 -1.4002 5 1 1.4465 2.6527 0.7000 6 1 3.5466 1.4403 0.7000 7 6 2.0046 -1.1940 0.0005 8 1 3.0847 -1.1939 0.0010 9 6 1.2511 -2.4992 0.0017 10 6 2.2305 -3.6446 0.0027 11 6 2.1504 -4.6105 0.9878 12 6 3.0564 -5.6603 0.9807 13 6 4.0170 -5.6965 -0.0178 14 6 4.0326 -4.6971 -0.9744 15 17 5.2262 -4.7338 -2.2346 16 7 3.1541 -3.7130 -0.9362 17 1 -0.4850 0.8399 -0.0004 18 1 0.6242 -2.5575 -0.8880 19 1 0.6248 -2.5563 0.8919 20 1 1.3916 -4.5485 1.7537 21 1 3.0174 -6.4290 1.7384 22 1 4.7411 -6.4971 -0.0513 RHF calculation, no. of doubly occupied orbitals= 32 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000261264318.mol2 22 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:50:39 Heat of formation + Delta-G solvation = -3.872450 kcal Electronic energy + Delta-G solvation = -9847.049578 eV Core-core repulsion = 7812.742142 eV Total energy + Delta-G solvation = -2034.307437 eV No. of doubly occupied orbitals = 32 Molecular weight (most abundant/longest-lived isotopes) = 197.030 amu Computer time = 0.11 seconds Orbital eigenvalues (eV) -41.09067 -37.59852 -35.48928 -33.54292 -32.85215 -29.41267 -25.75330 -24.29976 -22.72883 -18.57586 -17.97828 -17.28268 -16.67420 -16.29443 -15.48042 -14.62984 -14.23456 -14.07399 -13.55922 -13.07214 -12.77683 -12.55103 -12.44626 -12.24712 -11.87972 -11.52006 -10.80071 -10.62077 -10.28987 -9.69160 -8.22151 -6.30768 0.07968 0.36786 0.88064 1.38360 1.40315 1.50914 2.39548 2.80388 3.11352 3.60892 3.99082 4.13415 4.19835 4.46243 4.79404 5.05496 5.18169 5.28238 5.44995 5.70273 5.71629 6.14837 6.77086 7.04981 7.35925 8.88955 Molecular weight = 197.03amu Principal moments of inertia in cm(-1) A = 0.041589 B = 0.010225 C = 0.008708 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 673.088803 B = 2737.683472 C = 3214.523814 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.928 5.928 2 C 0.007 3.993 3 Si 0.962 3.038 4 H -0.277 1.277 5 H -0.274 1.274 6 H -0.270 1.270 7 C -0.519 4.519 8 H 0.047 0.953 9 C 0.064 3.936 10 C 0.155 3.845 11 C -0.180 4.180 12 C -0.048 4.048 13 C -0.168 4.168 14 C 0.153 3.847 15 Cl -0.045 7.045 16 N -0.513 5.513 17 H 0.266 0.734 18 H 0.010 0.990 19 H 0.034 0.966 20 H 0.156 0.844 21 H 0.191 0.809 22 H 0.176 0.824 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.394 -11.833 2.146 14.117 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.568 5.568 2 C -0.191 4.191 3 Si 0.787 3.213 4 H -0.202 1.202 5 H -0.199 1.199 6 H -0.194 1.194 7 C -0.557 4.557 8 H 0.065 0.935 9 C 0.027 3.973 10 C 0.019 3.981 11 C -0.200 4.200 12 C -0.073 4.073 13 C -0.188 4.188 14 C -0.012 4.012 15 Cl -0.016 7.016 16 N -0.225 5.225 17 H 0.075 0.925 18 H 0.028 0.972 19 H 0.052 0.948 20 H 0.174 0.826 21 H 0.208 0.792 22 H 0.193 0.807 Dipole moment (debyes) X Y Z Total from point charges 7.379 -11.074 1.401 13.381 hybrid contribution 0.211 0.591 0.109 0.637 sum 7.590 -10.483 1.510 13.030 Atomic orbital electron populations 1.70036 1.07306 1.27936 1.51504 1.25812 0.95801 1.02768 0.94757 0.85488 0.78604 0.78853 0.78340 1.20232 1.19924 1.19425 1.21225 0.92760 0.91227 1.50532 0.93497 1.18110 0.92162 0.90100 0.96938 1.21732 0.92098 0.95171 0.89107 1.22382 1.02289 0.95291 1.00073 1.22036 0.91051 0.97127 0.97120 1.22100 1.02299 0.99724 0.94710 1.22067 0.93065 0.93660 0.92400 1.98354 1.53213 1.97885 1.52188 1.66692 1.04548 1.24168 1.27126 0.92500 0.97162 0.94810 0.82641 0.79206 0.80664 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -55.85 13.29 21.45 0.28 -55.56 14 2 C 0.01 0.39 5.46 84.66 0.46 0.85 14 3 Si 0.96 45.64 29.54 68.60 2.03 47.67 14 4 H -0.28 -12.92 7.11 99.48 0.71 -12.21 14 5 H -0.27 -12.37 7.11 99.48 0.71 -11.67 14 6 H -0.27 -12.48 7.11 99.48 0.71 -11.78 14 7 C -0.52 -30.51 8.91 25.60 0.23 -30.28 14 8 H 0.05 2.81 7.68 -2.91 -0.02 2.79 14 9 C 0.06 3.45 5.37 29.10 0.16 3.60 14 10 C 0.16 6.94 6.13 42.54 0.26 7.20 14 11 C -0.18 -6.02 9.71 22.36 0.22 -5.80 14 12 C -0.05 -1.18 10.17 22.46 0.23 -0.95 14 13 C -0.17 -4.44 9.88 22.39 0.22 -4.22 14 14 C 0.15 5.48 7.27 84.70 0.62 6.10 14 15 Cl -0.04 -1.40 29.11 -2.72 -0.08 -1.48 14 16 N -0.51 -23.29 9.94 -174.84 -1.74 -25.03 14 17 H 0.27 15.01 8.31 -92.71 -0.77 14.24 14 18 H 0.01 0.60 8.14 -2.39 -0.02 0.59 14 19 H 0.03 1.79 7.87 -2.39 -0.02 1.77 14 20 H 0.16 4.49 7.95 -2.91 -0.02 4.47 14 21 H 0.19 2.64 8.06 -2.91 -0.02 2.62 14 22 H 0.18 3.16 8.06 -2.91 -0.02 3.14 14 Total: -1.00 -68.05 222.16 4.10 -63.95 By element: Atomic # 1 Polarization: -7.26 SS G_CDS: 1.22 Total: -6.04 kcal Atomic # 6 Polarization: -25.89 SS G_CDS: 2.39 Total: -23.50 kcal Atomic # 7 Polarization: -79.14 SS G_CDS: -1.45 Total: -80.60 kcal Atomic # 14 Polarization: 45.64 SS G_CDS: 2.03 Total: 47.67 kcal Atomic # 17 Polarization: -1.40 SS G_CDS: -0.08 Total: -1.48 kcal Total: -68.05 4.10 -63.95 kcal The number of atoms in the molecule is 22 The average number of expansion shells was 14.00 The maximum number of expansion shells was 14 The minimum number of expansion shells was 14 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261264318.mol2 22 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 60.074 kcal (2) G-P(sol) polarization free energy of solvation -68.050 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -7.976 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.103 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.947 kcal (6) G-S(sol) free energy of system = (1) + (5) -3.872 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.11 seconds