Wall clock time and date at job start Mon Mar 30 2020 02:12:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31463 * 1 3 3 Si 1.86797 * 120.00084 * 2 1 4 4 H 1.48509 * 109.47277 * 0.02562 * 3 2 1 5 5 H 1.48498 * 109.47326 * 240.00553 * 3 2 1 6 6 H 1.48493 * 109.47244 * 119.99974 * 3 2 1 7 7 C 1.38886 * 120.00076 * 180.02562 * 2 1 3 8 8 H 1.08000 * 120.00047 * 154.51933 * 7 2 1 9 9 N 1.37193 * 119.99833 * 334.52001 * 7 2 1 10 10 C 1.47360 * 125.58100 * 146.98472 * 9 7 2 11 11 C 1.53216 * 103.33788 * 179.97438 * 10 9 7 12 12 C 1.52817 * 115.66234 * 230.43671 * 11 10 9 13 13 C 1.53962 * 86.78952 * 217.43448 * 12 11 10 14 14 C 1.52820 * 115.65630 * 129.51168 * 11 10 9 15 15 O 1.44728 * 105.03022 * 359.97438 * 11 10 9 16 16 C 1.34154 * 108.99336 * 359.77578 * 15 11 10 17 17 O 1.21504 * 123.10364 * 180.26668 * 16 15 11 18 18 H 0.96997 * 120.00391 * 174.47451 * 1 2 3 19 19 H 1.09008 * 110.64547 * 298.44579 * 10 9 7 20 20 H 1.08999 * 110.65060 * 61.52558 * 10 9 7 21 21 H 1.09001 * 113.65800 * 331.90232 * 12 11 10 22 22 H 1.08992 * 113.66396 * 102.95580 * 12 11 10 23 23 H 1.09004 * 113.57875 * 270.11150 * 13 12 11 24 24 H 1.08994 * 113.58840 * 139.30664 * 13 12 11 25 25 H 1.08998 * 113.66342 * 257.04764 * 14 11 10 26 26 H 1.09003 * 113.65601 * 28.10023 * 14 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3146 0.0000 0.0000 3 14 2.2486 1.6177 0.0000 4 1 1.2836 2.7465 0.0006 5 1 3.1023 1.6965 -1.2125 6 1 3.1024 1.6964 1.2124 7 6 2.0091 -1.2028 -0.0005 8 1 3.0103 -1.2481 -0.4029 9 7 1.4232 -2.3333 0.5101 10 6 1.6417 -3.7069 0.0233 11 6 0.7536 -4.5529 0.9416 12 6 1.4330 -5.7558 1.5947 13 6 0.1045 -6.5070 1.3913 14 6 -0.1853 -5.5310 0.2365 15 8 0.1314 -3.6041 1.8401 16 6 0.5624 -2.3699 1.5386 17 8 0.2039 -1.3766 2.1395 18 1 -0.4850 -0.8361 -0.0809 19 1 1.3225 -3.8022 -1.0147 20 1 2.6882 -3.9915 0.1324 21 1 2.2589 -6.1620 1.0107 22 1 1.6903 -5.5977 2.6419 23 1 -0.5851 -6.4079 2.2296 24 1 0.2326 -7.5399 1.0677 25 1 -1.2209 -5.1932 0.1987 26 1 0.1855 -5.8739 -0.7295 RHF calculation, no. of doubly occupied orbitals= 36 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000261266593.mol2 26 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:12:41 Heat of formation + Delta-G solvation = -65.145463 kcal Electronic energy + Delta-G solvation = -12956.023228 eV Core-core repulsion = 10614.182724 eV Total energy + Delta-G solvation = -2341.840504 eV No. of doubly occupied orbitals = 36 Molecular weight (most abundant/longest-lived isotopes) = 197.084 amu Computer time = 0.17 seconds Orbital eigenvalues (eV) -42.63956 -39.33161 -36.86254 -36.52822 -33.71979 -29.09541 -26.86671 -26.74162 -24.05170 -23.04232 -21.31201 -19.17892 -17.74702 -17.64414 -17.19489 -16.49688 -15.79834 -15.47034 -15.07992 -14.74161 -14.43334 -14.00496 -13.56267 -13.14021 -12.63680 -12.15389 -12.04049 -11.93692 -11.85253 -11.59939 -11.21222 -11.16935 -10.80133 -9.84640 -8.80853 -6.20306 1.49394 1.61986 1.80954 1.95911 2.05138 2.50964 2.94051 3.09577 3.42900 3.44384 3.57417 3.77587 4.16499 4.35299 4.53588 4.69749 4.72086 4.81524 4.98449 5.00112 5.09529 5.38251 5.70313 5.96789 6.67738 6.77892 7.26626 7.81495 8.50812 Molecular weight = 197.08amu Principal moments of inertia in cm(-1) A = 0.075760 B = 0.011249 C = 0.010750 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 369.500406 B = 2488.430594 C = 2604.057939 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.865 5.865 2 C -0.029 4.029 3 Si 1.131 2.869 4 H -0.287 1.287 5 H -0.244 1.244 6 H -0.279 1.279 7 C -0.437 4.437 8 H 0.101 0.899 9 N -0.478 5.478 10 C 0.070 3.930 11 C 0.038 3.962 12 C -0.123 4.123 13 C -0.120 4.120 14 C -0.131 4.131 15 O -0.342 6.342 16 C 0.563 3.437 17 O -0.589 6.589 18 H 0.252 0.748 19 H 0.089 0.911 20 H 0.101 0.899 21 H 0.135 0.865 22 H 0.069 0.931 23 H 0.071 0.929 24 H 0.111 0.889 25 H 0.062 0.938 26 H 0.132 0.868 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.845 -13.210 -2.685 14.325 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.496 5.496 2 C -0.235 4.235 3 Si 0.950 3.050 4 H -0.213 1.213 5 H -0.168 1.168 6 H -0.205 1.205 7 C -0.562 4.562 8 H 0.118 0.882 9 N -0.213 5.213 10 C -0.053 4.053 11 C 0.000 4.000 12 C -0.161 4.161 13 C -0.157 4.157 14 C -0.168 4.168 15 O -0.254 6.254 16 C 0.318 3.682 17 O -0.480 6.480 18 H 0.061 0.939 19 H 0.107 0.893 20 H 0.119 0.881 21 H 0.153 0.847 22 H 0.088 0.912 23 H 0.090 0.910 24 H 0.130 0.870 25 H 0.081 0.919 26 H 0.150 0.850 Dipole moment (debyes) X Y Z Total from point charges 4.315 -11.208 -2.184 12.207 hybrid contribution -0.272 -1.384 0.106 1.415 sum 4.043 -12.592 -2.078 13.387 Atomic orbital electron populations 1.70682 1.08870 1.29981 1.40069 1.28082 0.95953 1.06662 0.92817 0.82790 0.74038 0.69812 0.78402 1.21262 1.16760 1.20509 1.20185 1.01196 0.87155 1.47687 0.88154 1.43847 1.42757 1.07593 1.27105 1.22949 1.01440 0.81796 0.99086 1.24133 0.95812 0.89475 0.90586 1.23300 0.99250 0.91544 1.01962 1.22794 0.95857 0.99642 0.97413 1.23336 0.98974 0.94168 1.00363 1.87002 1.65633 1.16873 1.55888 1.19038 0.84166 0.82581 0.82453 1.90866 1.65403 1.33132 1.58588 0.93904 0.89277 0.88065 0.84687 0.91205 0.91020 0.87038 0.91950 0.84983 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.86 -56.86 12.17 21.65 0.26 -56.60 15 2 C -0.03 -1.74 4.59 84.90 0.39 -1.35 15 3 Si 1.13 51.36 29.99 68.60 2.06 53.42 15 4 H -0.29 -13.28 7.11 99.48 0.71 -12.57 15 5 H -0.24 -9.36 7.11 99.48 0.71 -8.65 15 6 H -0.28 -12.34 7.11 99.48 0.71 -11.64 15 7 C -0.44 -25.05 9.86 84.01 0.83 -24.23 15 8 H 0.10 5.26 7.95 -2.91 -0.02 5.24 15 9 N -0.48 -25.88 2.84 -764.19 -2.17 -28.05 15 10 C 0.07 2.67 7.11 86.29 0.61 3.28 15 11 C 0.04 1.31 1.66 -10.85 -0.02 1.29 15 12 C -0.12 -2.95 7.54 30.86 0.23 -2.72 15 13 C -0.12 -2.48 8.09 31.24 0.25 -2.23 15 14 C -0.13 -3.34 7.54 30.86 0.23 -3.11 15 15 O -0.34 -16.90 10.93 -50.93 -0.56 -17.46 15 16 C 0.56 33.36 7.62 129.89 0.99 34.35 15 17 O -0.59 -40.83 15.25 19.65 0.30 -40.53 15 18 H 0.25 17.23 7.11 -92.71 -0.66 16.57 15 19 H 0.09 3.13 7.96 -2.38 -0.02 3.11 15 20 H 0.10 3.27 7.96 -2.39 -0.02 3.25 15 21 H 0.14 2.24 8.14 -2.39 -0.02 2.22 15 22 H 0.07 1.83 8.14 -2.39 -0.02 1.81 15 23 H 0.07 1.68 8.14 -2.38 -0.02 1.66 15 24 H 0.11 1.49 8.14 -2.39 -0.02 1.47 15 25 H 0.06 1.81 8.14 -2.39 -0.02 1.79 15 26 H 0.13 2.46 8.14 -2.39 -0.02 2.44 15 Total: -1.00 -81.93 226.35 4.70 -77.24 By element: Atomic # 1 Polarization: 5.40 SS G_CDS: 1.28 Total: 6.69 kcal Atomic # 6 Polarization: 1.77 SS G_CDS: 3.52 Total: 5.29 kcal Atomic # 7 Polarization: -82.74 SS G_CDS: -1.91 Total: -84.64 kcal Atomic # 8 Polarization: -57.73 SS G_CDS: -0.26 Total: -57.99 kcal Atomic # 14 Polarization: 51.36 SS G_CDS: 2.06 Total: 53.42 kcal Total: -81.93 4.70 -77.24 kcal The number of atoms in the molecule is 26 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261266593.mol2 26 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 12.090 kcal (2) G-P(sol) polarization free energy of solvation -81.932 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -69.842 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.697 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.236 kcal (6) G-S(sol) free energy of system = (1) + (5) -65.145 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.17 seconds