Wall clock time and date at job start Mon Mar 30 2020 02:00:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46496 * 1 3 3 N 1.28554 * 125.87855 * 2 1 4 4 N 1.28374 * 111.77267 * 179.97438 * 3 2 1 5 5 C 1.34261 * 109.55752 * 359.74856 * 4 3 2 6 6 C 1.47088 * 127.24696 * 180.24618 * 5 4 3 7 7 O 1.21562 * 119.99687 * 185.21220 * 6 5 4 8 8 O 1.34852 * 120.00110 * 5.20603 * 6 5 4 9 9 C 1.37442 * 125.87687 * 179.97438 * 2 1 3 10 10 C 1.39830 * 127.54325 * 359.97232 * 9 2 1 11 11 H 1.08000 * 119.99740 * 140.05110 * 10 9 2 12 12 C 1.40582 * 119.99963 * 320.05206 * 10 9 2 13 13 N 1.30487 * 120.00011 * 340.06553 * 12 10 9 14 14 Si 1.86804 * 119.99902 * 160.06523 * 12 10 9 15 15 H 1.48497 * 109.47058 * 59.99893 * 14 12 10 16 16 H 1.48500 * 109.46934 * 180.02562 * 14 12 10 17 17 H 1.48500 * 109.47041 * 300.00027 * 14 12 10 18 18 H 1.09002 * 109.47732 * 270.00892 * 1 2 3 19 19 H 1.08998 * 109.47224 * 30.01078 * 1 2 3 20 20 H 1.09009 * 109.47225 * 150.00283 * 1 2 3 21 21 H 0.96693 * 116.99954 * 180.02562 * 8 6 5 22 22 H 0.96998 * 120.00066 * 185.09206 * 13 12 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 7 2.2184 1.0416 0.0000 4 7 3.4634 0.7288 0.0005 5 6 3.5910 -0.6078 0.0065 6 6 4.8411 -1.3827 0.0141 7 8 4.8056 -2.5944 -0.0767 8 8 6.0266 -0.7491 0.1217 9 6 2.2704 -1.1137 0.0005 10 6 1.8714 -2.4538 0.0016 11 1 2.4043 -3.1764 -0.5986 12 6 0.7766 -2.8606 0.7841 13 7 0.3781 -2.1215 1.7829 14 14 -0.1077 -4.4591 0.3939 15 1 0.8477 -5.5913 0.4974 16 1 -1.2187 -4.6585 1.3587 17 1 -0.6552 -4.3980 -0.9852 18 1 -0.3634 0.0002 1.0276 19 1 -0.3633 0.8899 -0.5140 20 1 -0.3634 -0.8901 -0.5138 21 1 6.8208 -1.3007 0.1219 22 1 -0.3287 -2.4367 2.3677 RHF calculation, no. of doubly occupied orbitals= 35 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000261277440.mol2 22 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:00:30 Heat of formation + Delta-G solvation = -15.944205 kcal Electronic energy + Delta-G solvation = -12395.845827 eV Core-core repulsion = 9952.598506 eV Total energy + Delta-G solvation = -2443.247321 eV No. of doubly occupied orbitals = 35 Molecular weight (most abundant/longest-lived isotopes) = 197.059 amu Computer time = 0.14 seconds Orbital eigenvalues (eV) -41.21040 -38.65341 -34.99915 -34.44583 -32.70772 -30.21649 -27.22006 -25.67743 -23.30150 -20.59741 -19.85403 -17.56905 -17.01827 -16.04756 -15.54729 -15.02605 -14.28012 -14.16605 -13.25643 -12.69155 -12.12884 -12.01116 -11.93877 -11.59429 -11.25159 -10.79070 -10.56862 -10.14620 -9.81521 -9.48817 -9.39954 -8.61663 -7.84006 -7.20067 -4.95231 2.55211 2.90334 2.92986 2.94363 3.28349 3.68565 3.73108 4.23239 4.33977 4.71825 5.71471 5.95337 6.08904 6.37416 6.75178 6.80339 7.06394 7.14212 7.40694 7.71591 8.10774 8.26399 8.50640 9.04438 9.75873 10.06160 Molecular weight = 197.06amu Principal moments of inertia in cm(-1) A = 0.035902 B = 0.016131 C = 0.011794 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 779.723451 B = 1735.368066 C = 2373.468692 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.123 3.877 2 N -0.348 5.348 3 N -0.147 5.147 4 N -0.224 5.224 5 C -0.205 4.205 6 C 0.579 3.421 7 O -0.534 6.534 8 O -0.517 6.517 9 C 0.260 3.740 10 C -0.431 4.431 11 H 0.114 0.886 12 C 0.077 3.923 13 N -0.788 5.788 14 Si 0.922 3.078 15 H -0.258 1.258 16 H -0.275 1.275 17 H -0.259 1.259 18 H 0.079 0.921 19 H 0.067 0.933 20 H 0.077 0.923 21 H 0.395 0.605 22 H 0.292 0.708 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.199 -1.921 -1.515 3.290 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.020 4.020 2 N -0.143 5.143 3 N -0.127 5.127 4 N -0.100 5.100 5 C -0.341 4.341 6 C 0.425 3.575 7 O -0.424 6.424 8 O -0.327 6.327 9 C 0.136 3.864 10 C -0.466 4.466 11 H 0.132 0.868 12 C -0.145 4.145 13 N -0.414 5.414 14 Si 0.745 3.255 15 H -0.182 1.182 16 H -0.200 1.200 17 H -0.183 1.183 18 H 0.098 0.902 19 H 0.086 0.914 20 H 0.096 0.904 21 H 0.250 0.750 22 H 0.104 0.896 Dipole moment (debyes) X Y Z Total from point charges -2.755 -0.395 -1.402 3.116 hybrid contribution -0.123 -2.217 0.146 2.225 sum -2.878 -2.613 -1.256 4.085 Atomic orbital electron populations 1.21666 0.74871 1.01973 1.03454 1.46951 1.07446 1.04230 1.55715 1.77425 0.96263 1.13310 1.25735 1.74536 1.09408 1.12935 1.13097 1.20147 0.90689 0.90721 1.32502 1.19021 0.81722 0.84655 0.72078 1.90804 1.87378 1.14747 1.49423 1.84717 1.16461 1.44830 1.86663 1.19181 0.86564 0.89150 0.91486 1.18908 1.11422 0.91441 1.24871 0.86787 1.26125 0.95092 0.99868 0.93402 1.69623 1.23969 1.37712 1.10129 0.86103 0.78938 0.80868 0.79616 1.18178 1.20002 1.18318 0.90241 0.91394 0.90434 0.74964 0.89642 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.12 2.45 9.61 59.84 0.58 3.02 14 2 N -0.35 -8.68 3.76 -65.04 -0.24 -8.93 14 3 N -0.15 -3.84 13.05 60.35 0.79 -3.05 14 4 N -0.22 -6.09 12.38 33.65 0.42 -5.68 14 5 C -0.20 -5.56 7.29 -82.01 -0.60 -6.15 14 6 C 0.58 14.33 8.33 34.32 0.29 14.61 14 7 O -0.53 -13.81 16.48 -19.31 -0.32 -14.13 14 8 O -0.52 -10.53 13.44 -40.91 -0.55 -11.08 14 9 C 0.26 6.97 6.22 -83.55 -0.52 6.45 14 10 C -0.43 -11.00 8.25 -38.10 -0.31 -11.32 14 11 H 0.11 2.95 7.41 -52.49 -0.39 2.56 14 12 C 0.08 1.76 4.24 -17.24 -0.07 1.69 14 13 N -0.79 -18.32 10.97 55.58 0.61 -17.71 14 14 Si 0.92 17.08 29.61 -169.99 -5.03 12.05 14 15 H -0.26 -4.90 7.11 56.52 0.40 -4.50 14 16 H -0.28 -4.88 7.11 56.52 0.40 -4.48 14 17 H -0.26 -4.67 7.11 56.52 0.40 -4.27 14 18 H 0.08 1.58 7.17 -51.93 -0.37 1.21 14 19 H 0.07 1.14 8.14 -51.93 -0.42 0.72 14 20 H 0.08 1.47 7.20 -51.92 -0.37 1.10 14 21 H 0.40 5.54 9.11 45.56 0.42 5.96 14 22 H 0.29 6.09 8.30 -40.82 -0.34 5.75 14 LS Contribution 212.28 15.07 3.20 3.20 Total: -1.00 -30.94 212.28 -2.05 -32.99 By element: Atomic # 1 Polarization: 4.32 SS G_CDS: -0.28 Total: 4.04 kcal Atomic # 6 Polarization: 8.95 SS G_CDS: -0.64 Total: 8.30 kcal Atomic # 7 Polarization: -36.93 SS G_CDS: 1.57 Total: -35.36 kcal Atomic # 8 Polarization: -24.35 SS G_CDS: -0.87 Total: -25.21 kcal Atomic # 14 Polarization: 17.08 SS G_CDS: -5.03 Total: 12.05 kcal Total LS contribution 3.20 Total: 3.20 kcal Total: -30.94 -2.05 -32.99 kcal The number of atoms in the molecule is 22 The average number of expansion shells was 14.00 The maximum number of expansion shells was 14 The minimum number of expansion shells was 14 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261277440.mol2 22 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 17.045 kcal (2) G-P(sol) polarization free energy of solvation -30.936 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -13.890 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.054 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -32.990 kcal (6) G-S(sol) free energy of system = (1) + (5) -15.944 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.14 seconds