Wall clock time and date at job start Mon Mar 30 2020 02:00:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46496 * 1 3 3 N 1.28554 * 125.87855 * 2 1 4 4 N 1.28374 * 111.77267 * 179.97438 * 3 2 1 5 5 C 1.34261 * 109.55752 * 359.74856 * 4 3 2 6 6 C 1.47088 * 127.24696 * 180.24618 * 5 4 3 7 7 O 1.21562 * 119.99687 * 185.21220 * 6 5 4 8 8 O 1.34852 * 120.00110 * 5.20603 * 6 5 4 9 9 C 1.37442 * 125.87687 * 179.97438 * 2 1 3 10 10 C 1.39830 * 127.54325 * 359.97232 * 9 2 1 11 11 H 1.08000 * 119.99740 * 140.05110 * 10 9 2 12 12 C 1.40582 * 119.99963 * 320.05206 * 10 9 2 13 13 N 1.30487 * 120.00011 * 340.06553 * 12 10 9 14 14 Si 1.86804 * 119.99902 * 160.06523 * 12 10 9 15 15 H 1.48497 * 109.47058 * 59.99893 * 14 12 10 16 16 H 1.48500 * 109.46934 * 180.02562 * 14 12 10 17 17 H 1.48500 * 109.47041 * 300.00027 * 14 12 10 18 18 H 1.09002 * 109.47732 * 270.00892 * 1 2 3 19 19 H 1.08998 * 109.47224 * 30.01078 * 1 2 3 20 20 H 1.09009 * 109.47225 * 150.00283 * 1 2 3 21 21 H 0.96693 * 116.99954 * 180.02562 * 8 6 5 22 22 H 0.96998 * 120.00066 * 185.09206 * 13 12 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 7 2.2184 1.0416 0.0000 4 7 3.4634 0.7288 0.0005 5 6 3.5910 -0.6078 0.0065 6 6 4.8411 -1.3827 0.0141 7 8 4.8056 -2.5944 -0.0767 8 8 6.0266 -0.7491 0.1217 9 6 2.2704 -1.1137 0.0005 10 6 1.8714 -2.4538 0.0016 11 1 2.4043 -3.1764 -0.5986 12 6 0.7766 -2.8606 0.7841 13 7 0.3781 -2.1215 1.7829 14 14 -0.1077 -4.4591 0.3939 15 1 0.8477 -5.5913 0.4974 16 1 -1.2187 -4.6585 1.3587 17 1 -0.6552 -4.3980 -0.9852 18 1 -0.3634 0.0002 1.0276 19 1 -0.3633 0.8899 -0.5140 20 1 -0.3634 -0.8901 -0.5138 21 1 6.8208 -1.3007 0.1219 22 1 -0.3287 -2.4367 2.3677 RHF calculation, no. of doubly occupied orbitals= 35 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000261277440.mol2 22 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:00:30 Heat of formation + Delta-G solvation = -39.735258 kcal Electronic energy + Delta-G solvation = -12396.877484 eV Core-core repulsion = 9952.598506 eV Total energy + Delta-G solvation = -2444.278978 eV No. of doubly occupied orbitals = 35 Molecular weight (most abundant/longest-lived isotopes) = 197.059 amu Computer time = 0.13 seconds Orbital eigenvalues (eV) -43.14651 -40.50151 -36.80879 -36.27590 -34.56503 -32.14350 -29.02117 -27.52031 -25.20581 -22.47597 -21.73295 -19.43710 -18.84357 -17.91052 -17.33544 -16.85289 -16.08999 -15.95437 -14.96901 -14.45805 -13.85542 -13.70360 -13.62335 -13.44767 -12.79328 -12.36960 -12.33541 -11.95953 -11.69006 -11.43195 -11.20386 -10.50589 -9.80876 -8.95407 -6.87278 0.69059 1.18666 1.40688 1.52834 1.56842 1.96375 2.16669 2.38448 2.55689 2.83858 4.05813 4.15783 4.52986 4.76755 4.86765 5.02560 5.21277 5.25346 5.76040 5.79450 6.16817 6.41265 6.63264 7.30504 8.02308 8.07915 Molecular weight = 197.06amu Principal moments of inertia in cm(-1) A = 0.035902 B = 0.016131 C = 0.011794 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 779.723451 B = 1735.368066 C = 2373.468692 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.118 3.882 2 N -0.350 5.350 3 N -0.153 5.153 4 N -0.242 5.242 5 C -0.239 4.239 6 C 0.581 3.419 7 O -0.554 6.554 8 O -0.508 6.508 9 C 0.234 3.766 10 C -0.450 4.450 11 H 0.103 0.897 12 C 0.049 3.951 13 N -0.803 5.803 14 Si 0.994 3.006 15 H -0.266 1.266 16 H -0.257 1.257 17 H -0.249 1.249 18 H 0.079 0.921 19 H 0.098 0.902 20 H 0.085 0.915 21 H 0.423 0.577 22 H 0.306 0.694 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.379 -2.817 -1.439 4.629 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.023 4.023 2 N -0.147 5.147 3 N -0.133 5.133 4 N -0.118 5.118 5 C -0.375 4.375 6 C 0.429 3.571 7 O -0.445 6.445 8 O -0.320 6.320 9 C 0.110 3.890 10 C -0.485 4.485 11 H 0.121 0.879 12 C -0.172 4.172 13 N -0.429 5.429 14 Si 0.812 3.188 15 H -0.191 1.191 16 H -0.181 1.181 17 H -0.172 1.172 18 H 0.097 0.903 19 H 0.117 0.883 20 H 0.104 0.896 21 H 0.283 0.717 22 H 0.118 0.882 Dipole moment (debyes) X Y Z Total from point charges -3.914 -1.256 -1.315 4.316 hybrid contribution 0.252 -1.908 0.179 1.933 sum -3.662 -3.165 -1.136 4.971 Atomic orbital electron populations 1.21939 0.72468 1.03935 1.03963 1.47246 1.08781 1.03377 1.55263 1.77290 0.96358 1.13939 1.25720 1.74458 1.10003 1.13235 1.14066 1.20703 0.92183 0.91042 1.33573 1.18821 0.82365 0.84186 0.71775 1.90778 1.87909 1.15338 1.50500 1.84636 1.16533 1.45035 1.85818 1.19557 0.86959 0.90204 0.92278 1.19037 1.13017 0.90895 1.25585 0.87927 1.26902 0.94632 1.03271 0.92398 1.69623 1.23916 1.39186 1.10156 0.85059 0.77732 0.75767 0.80216 1.19067 1.18052 1.17223 0.90284 0.88319 0.89645 0.71679 0.88184 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.12 4.52 9.61 127.77 1.23 5.75 14 2 N -0.35 -17.34 3.76 -359.68 -1.35 -18.69 14 3 N -0.15 -7.97 13.05 37.02 0.48 -7.49 14 4 N -0.24 -13.24 12.38 -47.45 -0.59 -13.83 14 5 C -0.24 -13.12 7.29 41.88 0.31 -12.82 14 6 C 0.58 28.86 8.33 70.14 0.58 29.45 14 7 O -0.55 -28.75 16.48 19.63 0.32 -28.43 14 8 O -0.51 -20.21 13.44 -57.65 -0.78 -20.99 14 9 C 0.23 12.57 6.22 39.43 0.25 12.82 14 10 C -0.45 -22.93 8.25 23.23 0.19 -22.73 14 11 H 0.10 5.36 7.41 -2.91 -0.02 5.33 14 12 C 0.05 2.16 4.24 85.46 0.36 2.52 14 13 N -0.80 -36.04 10.97 21.94 0.24 -35.79 14 14 Si 0.99 33.22 29.61 68.60 2.03 35.25 14 15 H -0.27 -9.26 7.11 99.48 0.71 -8.55 14 16 H -0.26 -7.79 7.11 99.48 0.71 -7.09 14 17 H -0.25 -7.89 7.11 99.48 0.71 -7.19 14 18 H 0.08 3.03 7.17 -2.39 -0.02 3.02 14 19 H 0.10 3.12 8.14 -2.39 -0.02 3.10 14 20 H 0.08 3.10 7.20 -2.38 -0.02 3.09 14 21 H 0.42 11.15 9.11 -74.06 -0.67 10.47 14 22 H 0.31 12.05 8.30 -92.71 -0.77 11.28 14 Total: -1.00 -65.40 212.28 3.88 -61.52 By element: Atomic # 1 Polarization: 12.86 SS G_CDS: 0.60 Total: 13.47 kcal Atomic # 6 Polarization: 12.07 SS G_CDS: 2.92 Total: 14.99 kcal Atomic # 7 Polarization: -74.59 SS G_CDS: -1.21 Total: -75.80 kcal Atomic # 8 Polarization: -48.97 SS G_CDS: -0.45 Total: -49.42 kcal Atomic # 14 Polarization: 33.22 SS G_CDS: 2.03 Total: 35.25 kcal Total: -65.40 3.88 -61.52 kcal The number of atoms in the molecule is 22 The average number of expansion shells was 14.00 The maximum number of expansion shells was 14 The minimum number of expansion shells was 14 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261277440.mol2 22 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 21.782 kcal (2) G-P(sol) polarization free energy of solvation -65.401 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -43.619 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.883 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.517 kcal (6) G-S(sol) free energy of system = (1) + (5) -39.735 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.13 seconds