Wall clock time and date at job start Mon Mar 30 2020 02:20:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.50704 * 109.46837 * 2 1 4 4 N 1.30250 * 125.61900 * 90.00187 * 3 2 1 5 5 C 1.34480 * 108.69872 * 179.97438 * 4 3 2 6 6 C 1.50696 * 126.16474 * 180.02562 * 5 4 3 7 7 H 1.09006 * 109.47511 * 65.02319 * 6 5 4 8 8 O 1.42905 * 109.47280 * 185.02506 * 6 5 4 9 9 C 1.50706 * 109.47259 * 305.02314 * 6 5 4 10 10 H 1.08005 * 119.99758 * 0.02562 * 9 6 5 11 11 C 1.37871 * 120.00102 * 180.02562 * 9 6 5 12 12 N 1.31516 * 120.00217 * 0.02562 * 11 9 6 13 13 Si 1.86800 * 119.99766 * 179.97438 * 11 9 6 14 14 H 1.48501 * 109.47057 * 179.97438 * 13 11 9 15 15 H 1.48500 * 109.47389 * 300.00068 * 13 11 9 16 16 H 1.48504 * 109.47102 * 60.00417 * 13 11 9 17 17 C 1.34321 * 107.66794 * 0.26054 * 5 4 3 18 18 O 1.33967 * 125.61415 * 269.95295 * 3 2 1 19 19 H 1.08996 * 109.47406 * 60.00133 * 1 2 3 20 20 H 1.09004 * 109.47320 * 179.97438 * 1 2 3 21 21 H 1.09000 * 109.47267 * 300.00071 * 1 2 3 22 22 H 1.09000 * 109.47267 * 239.99928 * 2 1 3 23 23 H 1.08998 * 109.46953 * 119.99600 * 2 1 3 24 24 H 0.96699 * 113.99284 * 59.99848 * 8 6 5 25 25 H 0.97001 * 119.99646 * 359.97438 * 12 11 9 26 26 H 1.08009 * 126.44337 * 179.73488 * 17 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0323 1.4209 0.0000 4 7 2.2851 2.1361 1.0588 5 6 2.7144 3.3489 0.6674 6 6 3.1167 4.4846 1.5725 7 1 4.0050 4.2019 2.1376 8 8 3.4015 5.6430 0.7856 9 6 1.9907 4.7898 2.5265 10 1 1.0754 4.2182 2.4820 11 6 2.1289 5.7987 3.4559 12 7 3.2432 6.4951 3.5098 13 14 0.7328 6.1775 4.6378 14 1 1.1292 7.2965 5.5299 15 1 -0.4772 6.5624 3.8677 16 1 0.4367 4.9741 5.4560 17 6 2.7151 3.3673 -0.6757 18 8 2.2931 2.1561 -1.0891 19 1 -0.3634 0.5138 -0.8899 20 1 -0.3634 -1.0277 -0.0005 21 1 -0.3634 0.5138 0.8900 22 1 1.8933 -0.5138 -0.8900 23 1 1.8933 -0.5138 0.8900 24 1 2.6541 5.9516 0.2554 25 1 3.9680 6.2987 2.8958 26 1 3.0026 4.1960 -1.3059 RHF calculation, no. of doubly occupied orbitals= 36 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000261282231.mol2 26 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:20:03 Heat of formation + Delta-G solvation = -72.383079 kcal Electronic energy + Delta-G solvation = -12346.240386 eV Core-core repulsion = 10004.086036 eV Total energy + Delta-G solvation = -2342.154351 eV No. of doubly occupied orbitals = 36 Molecular weight (most abundant/longest-lived isotopes) = 197.084 amu Computer time = 0.15 seconds Orbital eigenvalues (eV) -44.26036 -38.34410 -35.75126 -34.72404 -34.38723 -30.58830 -28.50738 -25.41121 -24.99104 -22.48503 -21.63944 -19.47717 -18.58982 -17.56975 -16.92360 -15.92548 -15.86818 -15.57928 -15.28586 -14.77412 -14.48005 -13.82887 -13.55060 -12.68212 -12.64639 -12.43749 -12.12954 -12.07540 -11.93437 -11.76453 -11.42841 -10.70440 -10.45195 -9.65179 -8.66260 -6.50505 0.52378 1.50628 1.58551 1.73877 1.79824 1.83452 2.54052 2.99199 3.17029 3.77722 3.95323 4.09765 4.24863 4.31982 4.47086 4.81067 4.85223 4.94269 5.07823 5.21405 5.25310 5.40582 5.74373 6.06726 6.50963 6.78598 7.05200 7.40863 8.70977 Molecular weight = 197.08amu Principal moments of inertia in cm(-1) A = 0.041784 B = 0.010688 C = 0.008964 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 669.960022 B = 2619.130685 C = 3122.792855 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.021 4.021 3 C 0.179 3.821 4 N -0.508 5.508 5 C -0.037 4.037 6 C 0.286 3.714 7 H 0.032 0.968 8 O -0.577 6.577 9 C -0.638 4.638 10 H 0.039 0.961 11 C -0.014 4.014 12 N -0.916 5.916 13 Si 1.118 2.882 14 H -0.278 1.278 15 H -0.269 1.269 16 H -0.276 1.276 17 C -0.083 4.083 18 O -0.207 6.207 19 H 0.057 0.943 20 H 0.105 0.895 21 H 0.040 0.960 22 H 0.122 0.878 23 H 0.110 0.890 24 H 0.370 0.630 25 H 0.268 0.732 26 H 0.242 0.758 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.315 -10.630 -8.796 14.786 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.058 4.058 3 C -0.029 4.029 4 N -0.238 5.238 5 C -0.156 4.156 6 C 0.228 3.772 7 H 0.050 0.950 8 O -0.382 6.382 9 C -0.676 4.676 10 H 0.058 0.942 11 C -0.216 4.216 12 N -0.551 5.551 13 Si 0.939 3.061 14 H -0.203 1.203 15 H -0.194 1.194 16 H -0.201 1.201 17 C -0.153 4.153 18 O -0.095 6.095 19 H 0.076 0.924 20 H 0.123 0.877 21 H 0.059 0.941 22 H 0.140 0.860 23 H 0.128 0.872 24 H 0.217 0.783 25 H 0.079 0.921 26 H 0.258 0.742 Dipole moment (debyes) X Y Z Total from point charges -5.216 -9.932 -6.723 13.079 hybrid contribution 0.422 -0.392 -2.006 2.087 sum -4.794 -10.324 -8.729 14.344 Atomic orbital electron populations 1.21764 0.92324 1.04361 1.01801 1.20333 0.97386 0.81469 1.06652 1.27484 0.98970 0.98247 0.78180 1.70257 1.17224 1.04474 1.31890 1.22895 1.03192 0.95152 0.94379 1.17493 0.94768 0.78777 0.86144 0.95010 1.86461 1.41901 1.46967 1.62883 1.22480 1.02348 1.21739 1.20996 0.94218 1.27333 1.02665 0.92468 0.99112 1.70793 1.05626 1.40118 1.38597 0.82944 0.72210 0.76640 0.74328 1.20334 1.19374 1.20124 1.24998 1.06649 0.88052 0.95564 1.84372 1.64843 1.22636 1.37646 0.92404 0.87682 0.94096 0.85964 0.87166 0.78274 0.92146 0.74219 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.87 9.89 71.98 0.71 -2.15 15 2 C -0.02 -0.46 6.56 29.85 0.20 -0.27 15 3 C 0.18 6.34 7.60 88.34 0.67 7.01 15 4 N -0.51 -23.24 11.28 -291.99 -3.29 -26.53 15 5 C -0.04 -1.76 6.26 41.26 0.26 -1.51 15 6 C 0.29 15.61 2.98 29.10 0.09 15.70 15 7 H 0.03 1.95 8.01 -2.38 -0.02 1.93 15 8 O -0.58 -29.00 11.42 -148.98 -1.70 -30.71 15 9 C -0.64 -37.69 8.73 25.60 0.22 -37.47 15 10 H 0.04 2.40 7.74 -2.91 -0.02 2.38 15 11 C -0.01 -0.81 5.40 84.65 0.46 -0.35 15 12 N -0.92 -57.22 13.53 21.45 0.29 -56.93 15 13 Si 1.12 51.41 29.90 68.60 2.05 53.46 15 14 H -0.28 -12.57 7.11 99.48 0.71 -11.87 15 15 H -0.27 -11.43 7.11 99.48 0.71 -10.73 15 16 H -0.28 -12.09 7.11 99.48 0.71 -11.38 15 17 C -0.08 -3.18 11.36 66.92 0.76 -2.42 15 18 O -0.21 -7.30 10.78 -3.77 -0.04 -7.34 15 19 H 0.06 1.15 8.14 -2.39 -0.02 1.13 15 20 H 0.10 1.34 8.14 -2.38 -0.02 1.32 15 21 H 0.04 1.01 8.14 -2.39 -0.02 0.99 15 22 H 0.12 1.90 8.14 -2.39 -0.02 1.88 15 23 H 0.11 2.31 8.14 -2.39 -0.02 2.29 15 24 H 0.37 16.07 8.79 -74.06 -0.65 15.42 15 25 H 0.27 17.17 6.47 -92.71 -0.60 16.57 15 26 H 0.24 7.28 7.83 -2.91 -0.02 7.26 15 Total: -1.00 -73.68 236.55 1.38 -72.30 By element: Atomic # 1 Polarization: 16.49 SS G_CDS: 0.71 Total: 17.20 kcal Atomic # 6 Polarization: -24.82 SS G_CDS: 3.37 Total: -21.46 kcal Atomic # 7 Polarization: -80.46 SS G_CDS: -3.00 Total: -83.47 kcal Atomic # 8 Polarization: -36.30 SS G_CDS: -1.74 Total: -38.04 kcal Atomic # 14 Polarization: 51.41 SS G_CDS: 2.05 Total: 53.46 kcal Total: -73.68 1.38 -72.30 kcal The number of atoms in the molecule is 26 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261282231.mol2 26 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -0.081 kcal (2) G-P(sol) polarization free energy of solvation -73.682 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -73.764 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.381 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.302 kcal (6) G-S(sol) free energy of system = (1) + (5) -72.383 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.15 seconds