Wall clock time and date at job start Mon Mar 30 2020 01:50:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86794 * 120.00464 * 2 1 4 4 H 1.48496 * 109.47341 * 179.97438 * 3 2 1 5 5 H 1.48508 * 109.46983 * 299.99446 * 3 2 1 6 6 H 1.48503 * 109.47491 * 59.99259 * 3 2 1 7 7 C 1.37884 * 119.99698 * 179.97438 * 2 1 3 8 8 H 1.08002 * 119.99697 * 179.97438 * 7 2 1 9 9 C 1.50702 * 119.99942 * 0.28408 * 7 2 1 10 10 C 1.50700 * 109.46869 * 179.72213 * 9 7 2 11 11 N 1.31866 * 119.62948 * 90.00212 * 10 9 7 12 12 C 1.31850 * 121.74180 * 179.97438 * 11 10 9 13 13 C 1.38229 * 120.79265 * 0.02562 * 12 11 10 14 14 C 1.38609 * 119.17348 * 359.97438 * 13 12 11 15 15 C 1.38307 * 119.62357 * 269.72043 * 10 9 7 16 16 Cl 1.73602 * 120.43419 * 0.02562 * 15 10 9 17 17 H 0.97005 * 119.99651 * 0.02562 * 1 2 3 18 18 H 1.09004 * 109.46965 * 299.72070 * 9 7 2 19 19 H 1.08994 * 109.46990 * 59.71924 * 9 7 2 20 20 H 1.08001 * 119.60720 * 179.97438 * 12 11 10 21 21 H 1.07997 * 120.41608 * 180.02562 * 13 12 11 22 22 H 1.08003 * 120.79713 * 180.02562 * 14 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6176 0.0000 4 1 3.7092 1.3462 0.0006 5 1 1.8906 2.3963 -1.2126 6 1 1.8905 2.3965 1.2124 7 6 2.0045 -1.1941 0.0005 8 1 3.0845 -1.1941 0.0001 9 6 1.2509 -2.4992 -0.0054 10 6 2.2302 -3.6447 -0.0104 11 7 2.6537 -4.1453 1.1337 12 6 3.5095 -5.1473 1.1779 13 6 3.9976 -5.7129 0.0149 14 6 3.5760 -5.2141 -1.2077 15 6 2.6701 -4.1627 -1.2149 16 17 2.1021 -3.5018 -2.7163 17 1 -0.4850 0.8401 -0.0004 18 1 0.6242 -2.5609 0.8844 19 1 0.6244 -2.5529 -0.8956 20 1 3.8338 -5.5303 2.1343 21 1 4.6981 -6.5337 0.0582 22 1 3.9402 -5.6365 -2.1326 RHF calculation, no. of doubly occupied orbitals= 32 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000261285221.mol2 22 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:50:20 Heat of formation + Delta-G solvation = 16.805966 kcal Electronic energy + Delta-G solvation = -10002.005045 eV Core-core repulsion = 7968.594291 eV Total energy + Delta-G solvation = -2033.410753 eV No. of doubly occupied orbitals = 32 Molecular weight (most abundant/longest-lived isotopes) = 197.030 amu Computer time = 0.10 seconds Orbital eigenvalues (eV) -39.63180 -35.93583 -33.53957 -31.93617 -31.07779 -27.55692 -23.78930 -22.96495 -21.03680 -16.56579 -16.30531 -16.00377 -15.25054 -14.39746 -13.70304 -13.14023 -12.62324 -12.12802 -11.68606 -11.42195 -11.35425 -10.80430 -10.69337 -10.23277 -9.91208 -9.59444 -9.13368 -8.78711 -8.38966 -8.11124 -6.02156 -4.04167 1.50639 1.67963 2.72018 3.32401 3.39454 3.44563 4.23727 4.49847 4.99987 5.10955 5.23605 5.35967 5.44298 5.75549 6.16627 6.33711 6.52451 7.09368 7.52550 7.55844 7.91995 8.27382 8.60660 8.96584 9.57667 11.08782 Molecular weight = 197.03amu Principal moments of inertia in cm(-1) A = 0.041361 B = 0.012128 C = 0.010692 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 676.801348 B = 2308.208232 C = 2618.106438 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.892 5.892 2 C 0.061 3.939 3 Si 0.896 3.104 4 H -0.273 1.273 5 H -0.283 1.283 6 H -0.283 1.283 7 C -0.500 4.500 8 H 0.054 0.946 9 C 0.054 3.946 10 C 0.188 3.812 11 N -0.473 5.473 12 C 0.097 3.903 13 C -0.197 4.197 14 C -0.074 4.074 15 C -0.093 4.093 16 Cl -0.053 7.053 17 H 0.262 0.738 18 H 0.042 0.958 19 H 0.049 0.951 20 H 0.152 0.848 21 H 0.132 0.868 22 H 0.134 0.866 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.021 -9.312 -2.485 11.364 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.531 5.531 2 C -0.140 4.140 3 Si 0.724 3.276 4 H -0.198 1.198 5 H -0.209 1.209 6 H -0.209 1.209 7 C -0.539 4.539 8 H 0.073 0.927 9 C 0.017 3.983 10 C 0.051 3.949 11 N -0.182 5.182 12 C -0.060 4.060 13 C -0.217 4.217 14 C -0.100 4.100 15 C -0.122 4.122 16 Cl -0.024 7.024 17 H 0.071 0.929 18 H 0.060 0.940 19 H 0.067 0.933 20 H 0.169 0.831 21 H 0.150 0.850 22 H 0.152 0.848 Dipole moment (debyes) X Y Z Total from point charges 5.505 -8.778 -1.841 10.523 hybrid contribution 0.863 0.519 -0.923 1.366 sum 6.368 -8.260 -2.764 10.789 Atomic orbital electron populations 1.69960 1.05941 1.26707 1.50474 1.24920 0.94875 0.99064 0.95143 0.86463 0.80086 0.83467 0.77597 1.19753 1.20923 1.20909 1.20819 0.92737 0.89270 1.51072 0.92736 1.18472 0.92080 0.88066 0.99729 1.22343 0.93575 0.93631 0.85388 1.67862 1.11458 1.10045 1.28845 1.22858 0.92898 0.92140 0.98133 1.21902 1.03800 1.03131 0.92882 1.21417 0.95066 0.94563 0.98954 1.21941 1.01923 0.98975 0.89401 1.98345 1.88042 1.85404 1.30658 0.92861 0.93985 0.93328 0.83099 0.85048 0.84833 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -26.43 13.29 55.43 0.74 -25.70 14 2 C 0.06 1.76 5.46 -17.82 -0.10 1.66 14 3 Si 0.90 21.89 29.54 -169.99 -5.02 16.87 14 4 H -0.27 -6.59 7.11 56.52 0.40 -6.19 14 5 H -0.28 -6.80 7.11 56.52 0.40 -6.40 14 6 H -0.28 -6.83 7.11 56.52 0.40 -6.43 14 7 C -0.50 -14.22 9.09 -34.44 -0.31 -14.54 14 8 H 0.05 1.57 7.74 -52.49 -0.41 1.16 14 9 C 0.05 1.43 4.88 -29.03 -0.14 1.28 14 10 C 0.19 4.29 5.97 -82.55 -0.49 3.80 14 11 N -0.47 -10.16 10.27 -9.45 -0.10 -10.25 14 12 C 0.10 1.61 11.18 -17.55 -0.20 1.41 14 13 C -0.20 -2.84 10.11 -39.45 -0.40 -3.23 14 14 C -0.07 -1.17 9.98 -39.24 -0.39 -1.56 14 15 C -0.09 -1.85 6.34 -39.36 -0.25 -2.10 14 16 Cl -0.05 -1.03 27.32 -51.86 -1.42 -2.45 14 17 H 0.26 7.30 8.31 -40.82 -0.34 6.96 14 18 H 0.04 1.19 8.14 -51.93 -0.42 0.77 14 19 H 0.05 1.31 6.88 -51.93 -0.36 0.96 14 20 H 0.15 1.93 8.06 -52.49 -0.42 1.51 14 21 H 0.13 1.37 8.06 -52.49 -0.42 0.95 14 22 H 0.13 1.71 8.06 -52.48 -0.42 1.28 14 LS Contribution 220.00 15.07 3.32 3.32 Total: -1.00 -30.58 220.00 -6.35 -36.93 By element: Atomic # 1 Polarization: -3.85 SS G_CDS: -1.59 Total: -5.44 kcal Atomic # 6 Polarization: -11.00 SS G_CDS: -2.28 Total: -13.28 kcal Atomic # 7 Polarization: -36.59 SS G_CDS: 0.64 Total: -35.95 kcal Atomic # 14 Polarization: 21.89 SS G_CDS: -5.02 Total: 16.87 kcal Atomic # 17 Polarization: -1.03 SS G_CDS: -1.42 Total: -2.45 kcal Total LS contribution 3.32 Total: 3.32 kcal Total: -30.58 -6.35 -36.93 kcal The number of atoms in the molecule is 22 The average number of expansion shells was 14.00 The maximum number of expansion shells was 14 The minimum number of expansion shells was 14 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261285221.mol2 22 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 53.738 kcal (2) G-P(sol) polarization free energy of solvation -30.578 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 23.160 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.354 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.932 kcal (6) G-S(sol) free energy of system = (1) + (5) 16.806 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.10 seconds