Wall clock time and date at job start Mon Mar 30 2020 01:50:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86794 * 120.00464 * 2 1 4 4 H 1.48496 * 109.47341 * 179.97438 * 3 2 1 5 5 H 1.48508 * 109.46983 * 299.99446 * 3 2 1 6 6 H 1.48503 * 109.47491 * 59.99259 * 3 2 1 7 7 C 1.37884 * 119.99698 * 179.97438 * 2 1 3 8 8 H 1.08002 * 119.99697 * 179.97438 * 7 2 1 9 9 C 1.50702 * 119.99942 * 0.28408 * 7 2 1 10 10 C 1.50700 * 109.46869 * 179.72213 * 9 7 2 11 11 N 1.31866 * 119.62948 * 90.00212 * 10 9 7 12 12 C 1.31850 * 121.74180 * 179.97438 * 11 10 9 13 13 C 1.38229 * 120.79265 * 0.02562 * 12 11 10 14 14 C 1.38609 * 119.17348 * 359.97438 * 13 12 11 15 15 C 1.38307 * 119.62357 * 269.72043 * 10 9 7 16 16 Cl 1.73602 * 120.43419 * 0.02562 * 15 10 9 17 17 H 0.97005 * 119.99651 * 0.02562 * 1 2 3 18 18 H 1.09004 * 109.46965 * 299.72070 * 9 7 2 19 19 H 1.08994 * 109.46990 * 59.71924 * 9 7 2 20 20 H 1.08001 * 119.60720 * 179.97438 * 12 11 10 21 21 H 1.07997 * 120.41608 * 180.02562 * 13 12 11 22 22 H 1.08003 * 120.79713 * 180.02562 * 14 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6176 0.0000 4 1 3.7092 1.3462 0.0006 5 1 1.8906 2.3963 -1.2126 6 1 1.8905 2.3965 1.2124 7 6 2.0045 -1.1941 0.0005 8 1 3.0845 -1.1941 0.0001 9 6 1.2509 -2.4992 -0.0054 10 6 2.2302 -3.6447 -0.0104 11 7 2.6537 -4.1453 1.1337 12 6 3.5095 -5.1473 1.1779 13 6 3.9976 -5.7129 0.0149 14 6 3.5760 -5.2141 -1.2077 15 6 2.6701 -4.1627 -1.2149 16 17 2.1021 -3.5018 -2.7163 17 1 -0.4850 0.8401 -0.0004 18 1 0.6242 -2.5609 0.8844 19 1 0.6244 -2.5529 -0.8956 20 1 3.8338 -5.5303 2.1343 21 1 4.6981 -6.5337 0.0582 22 1 3.9402 -5.6365 -2.1326 RHF calculation, no. of doubly occupied orbitals= 32 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000261285221.mol2 22 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:50:20 Heat of formation + Delta-G solvation = -2.896473 kcal Electronic energy + Delta-G solvation = -10002.859406 eV Core-core repulsion = 7968.594291 eV Total energy + Delta-G solvation = -2034.265115 eV No. of doubly occupied orbitals = 32 Molecular weight (most abundant/longest-lived isotopes) = 197.030 amu Computer time = 0.12 seconds Orbital eigenvalues (eV) -41.06403 -37.41567 -35.52753 -33.50001 -32.71016 -29.38828 -25.71175 -24.33783 -22.68954 -18.57511 -17.84556 -17.45959 -16.80717 -16.21339 -15.29383 -14.53660 -14.21514 -13.97238 -13.39564 -13.25060 -12.89010 -12.67209 -12.57882 -12.04762 -11.70587 -11.56268 -10.61745 -10.58326 -10.25747 -9.61955 -8.19742 -6.30147 0.12092 0.32969 1.25911 1.39358 1.39688 1.52721 2.39917 2.86533 3.12805 3.61010 3.89133 3.97108 4.16408 4.52944 4.81667 5.02130 5.10739 5.31935 5.49439 5.71831 5.74016 6.13265 6.76972 7.15167 7.36044 8.91547 Molecular weight = 197.03amu Principal moments of inertia in cm(-1) A = 0.041361 B = 0.012128 C = 0.010692 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 676.801348 B = 2308.208232 C = 2618.106438 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.926 5.926 2 C 0.009 3.991 3 Si 0.963 3.037 4 H -0.268 1.268 5 H -0.274 1.274 6 H -0.276 1.276 7 C -0.513 4.513 8 H 0.046 0.954 9 C 0.064 3.936 10 C 0.149 3.851 11 N -0.512 5.512 12 C 0.090 3.910 13 C -0.167 4.167 14 C -0.067 4.067 15 C -0.108 4.108 16 Cl -0.062 7.062 17 H 0.266 0.734 18 H 0.004 0.996 19 H 0.031 0.969 20 H 0.190 0.810 21 H 0.188 0.812 22 H 0.172 0.828 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.374 -10.607 -2.653 13.772 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.566 5.566 2 C -0.189 4.189 3 Si 0.788 3.212 4 H -0.192 1.192 5 H -0.199 1.199 6 H -0.202 1.202 7 C -0.551 4.551 8 H 0.064 0.936 9 C 0.026 3.974 10 C 0.012 3.988 11 N -0.222 5.222 12 C -0.067 4.067 13 C -0.186 4.186 14 C -0.093 4.093 15 C -0.137 4.137 16 Cl -0.033 7.033 17 H 0.075 0.925 18 H 0.022 0.978 19 H 0.049 0.951 20 H 0.207 0.793 21 H 0.205 0.795 22 H 0.189 0.811 Dipole moment (debyes) X Y Z Total from point charges 7.857 -10.079 -2.014 12.938 hybrid contribution 0.196 0.760 -0.822 1.137 sum 8.053 -9.319 -2.836 12.639 Atomic orbital electron populations 1.70075 1.07485 1.27826 1.51254 1.25804 0.95749 1.02733 0.94608 0.85425 0.78820 0.78958 0.78020 1.19215 1.19927 1.20154 1.21042 0.92398 0.90723 1.50956 0.93596 1.18096 0.92507 0.89812 0.96941 1.21692 0.95262 0.94435 0.87397 1.67690 1.13417 1.12259 1.28827 1.23586 0.91478 0.90667 1.00995 1.22498 1.02302 1.02725 0.91067 1.21907 0.93224 0.92734 1.01425 1.22023 1.03250 1.00389 0.88068 1.98332 1.88380 1.85838 1.30754 0.92534 0.97787 0.95091 0.79281 0.79490 0.81069 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -56.59 13.29 21.45 0.28 -56.31 14 2 C 0.01 0.55 5.46 84.66 0.46 1.01 14 3 Si 0.96 45.39 29.54 68.60 2.03 47.42 14 4 H -0.27 -12.28 7.11 99.48 0.71 -11.57 14 5 H -0.27 -12.42 7.11 99.48 0.71 -11.71 14 6 H -0.28 -12.61 7.11 99.48 0.71 -11.91 14 7 C -0.51 -30.13 9.09 25.60 0.23 -29.89 14 8 H 0.05 2.70 7.74 -2.91 -0.02 2.68 14 9 C 0.06 3.57 4.88 29.10 0.14 3.71 14 10 C 0.15 6.91 5.97 42.57 0.25 7.16 14 11 N -0.51 -21.86 10.27 -183.81 -1.89 -23.75 14 12 C 0.09 2.69 11.18 84.69 0.95 3.64 14 13 C -0.17 -3.94 10.11 22.36 0.23 -3.71 14 14 C -0.07 -1.87 9.98 22.49 0.22 -1.65 14 15 C -0.11 -4.21 6.34 22.42 0.14 -4.07 14 16 Cl -0.06 -2.39 27.32 -2.72 -0.07 -2.47 14 17 H 0.27 15.15 8.31 -92.70 -0.77 14.38 14 18 H 0.00 0.24 8.14 -2.38 -0.02 0.22 14 19 H 0.03 1.78 6.88 -2.39 -0.02 1.76 14 20 H 0.19 4.00 8.06 -2.91 -0.02 3.98 14 21 H 0.19 2.43 8.06 -2.91 -0.02 2.41 14 22 H 0.17 3.50 8.06 -2.91 -0.02 3.47 14 Total: -1.00 -69.40 220.00 4.20 -65.20 By element: Atomic # 1 Polarization: -7.51 SS G_CDS: 1.22 Total: -6.29 kcal Atomic # 6 Polarization: -26.43 SS G_CDS: 2.63 Total: -23.80 kcal Atomic # 7 Polarization: -78.45 SS G_CDS: -1.60 Total: -80.06 kcal Atomic # 14 Polarization: 45.39 SS G_CDS: 2.03 Total: 47.42 kcal Atomic # 17 Polarization: -2.39 SS G_CDS: -0.07 Total: -2.47 kcal Total: -69.40 4.20 -65.20 kcal The number of atoms in the molecule is 22 The average number of expansion shells was 14.00 The maximum number of expansion shells was 14 The minimum number of expansion shells was 14 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261285221.mol2 22 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 62.301 kcal (2) G-P(sol) polarization free energy of solvation -69.398 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -7.098 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.201 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.197 kcal (6) G-S(sol) free energy of system = (1) + (5) -2.896 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.12 seconds