Wall clock time and date at job start Mon Mar 30 2020 02:20:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 C 1.50699 * 109.46963 * 2 1 4 4 N 1.30260 * 125.61801 * 90.02734 * 3 2 1 5 5 C 1.34485 * 108.69814 * 179.97438 * 4 3 2 6 6 C 1.34330 * 107.66950 * 359.97438 * 5 4 3 7 7 C 1.50703 * 126.44063 * 179.97438 * 6 5 4 8 8 H 1.09004 * 109.46713 * 25.00629 * 7 6 5 9 9 O 1.42902 * 109.46879 * 145.00383 * 7 6 5 10 10 C 1.50698 * 109.47391 * 265.00589 * 7 6 5 11 11 H 1.07996 * 119.99823 * 359.97438 * 10 7 6 12 12 C 1.37882 * 119.99830 * 180.02562 * 10 7 6 13 13 N 1.31508 * 119.99837 * 180.02562 * 12 10 7 14 14 Si 1.86796 * 119.99841 * 359.97438 * 12 10 7 15 15 H 1.48500 * 109.47216 * 90.00333 * 14 12 10 16 16 H 1.48499 * 109.46989 * 210.00107 * 14 12 10 17 17 H 1.48502 * 109.47674 * 330.00185 * 14 12 10 18 18 O 1.33967 * 125.62312 * 269.98910 * 3 2 1 19 19 H 1.09004 * 109.46680 * 299.99834 * 1 2 3 20 20 H 1.08994 * 109.47332 * 59.99587 * 1 2 3 21 21 H 1.08996 * 109.46597 * 179.97438 * 1 2 3 22 22 H 1.09003 * 109.46873 * 240.00682 * 2 1 3 23 23 H 1.09001 * 109.47259 * 120.00020 * 2 1 3 24 24 H 1.08003 * 126.15957 * 179.97438 * 5 4 3 25 25 H 0.96696 * 114.00070 * 59.99389 * 9 7 6 26 26 H 0.96994 * 120.00248 * 179.97438 * 13 12 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0324 1.4208 0.0000 4 7 2.2857 2.1359 1.0589 5 6 2.7149 3.3488 0.6675 6 6 2.7210 3.3653 -0.6757 7 6 3.1289 4.5193 -1.5549 8 1 3.8177 5.1652 -1.0103 9 8 3.7721 4.0194 -2.7290 10 6 1.9063 5.3074 -1.9488 11 1 0.9314 5.0029 -1.5979 12 6 2.0324 6.4167 -2.7579 13 7 0.9655 7.1048 -3.1012 14 14 3.7186 6.9429 -3.3653 15 1 4.0098 6.2740 -4.6588 16 1 3.7393 8.4157 -3.5541 17 1 4.7473 6.5574 -2.3661 18 8 2.2926 2.1564 -1.0890 19 1 -0.3633 0.5138 0.8900 20 1 -0.3634 0.5139 -0.8899 21 1 -0.3632 -1.0277 -0.0005 22 1 1.8934 -0.5137 -0.8901 23 1 1.8934 -0.5138 0.8900 24 1 3.0027 4.1629 1.3163 25 1 3.2165 3.4358 -3.2636 26 1 1.0541 7.8853 -3.6702 RHF calculation, no. of doubly occupied orbitals= 36 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000261288469.mol2 26 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:20:05 Heat of formation + Delta-G solvation = -38.652738 kcal Electronic energy + Delta-G solvation = -12361.784004 eV Core-core repulsion = 10021.092311 eV Total energy + Delta-G solvation = -2340.691693 eV No. of doubly occupied orbitals = 36 Molecular weight (most abundant/longest-lived isotopes) = 197.084 amu Computer time = 0.13 seconds Orbital eigenvalues (eV) -42.68129 -36.30223 -34.25724 -33.57681 -32.46850 -29.87156 -26.88676 -24.17017 -22.54257 -21.32876 -20.13764 -17.74165 -16.58541 -15.95550 -15.22070 -14.90388 -14.49679 -13.86085 -13.44862 -13.07228 -12.60303 -12.47692 -11.97449 -11.65907 -11.31377 -11.13703 -10.94021 -10.67828 -10.40694 -10.05179 -9.53415 -9.01637 -8.82609 -7.91491 -6.29949 -4.45919 2.13065 3.24442 3.27979 3.33757 3.38487 3.48549 4.33362 4.48315 4.96400 5.09500 5.24130 5.38582 5.56787 5.69957 5.77000 5.78024 6.00557 6.18842 6.27254 6.51904 6.90538 7.00283 7.22125 8.08163 8.30320 8.57372 8.75860 9.27655 10.79695 Molecular weight = 197.08amu Principal moments of inertia in cm(-1) A = 0.057464 B = 0.009881 C = 0.009477 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 487.143366 B = 2833.041472 C = 2953.676954 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C -0.018 4.018 3 C 0.153 3.847 4 N -0.481 5.481 5 C -0.072 4.072 6 C -0.007 4.007 7 C 0.271 3.729 8 H 0.096 0.904 9 O -0.579 6.579 10 C -0.566 4.566 11 H 0.077 0.923 12 C 0.088 3.912 13 N -0.881 5.881 14 Si 0.913 3.087 15 H -0.275 1.275 16 H -0.300 1.300 17 H -0.266 1.266 18 O -0.197 6.197 19 H 0.062 0.938 20 H 0.061 0.939 21 H 0.067 0.933 22 H 0.087 0.913 23 H 0.098 0.902 24 H 0.178 0.822 25 H 0.370 0.630 26 H 0.270 0.730 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.128 -10.383 3.494 11.160 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.056 4.056 3 C -0.054 4.054 4 N -0.211 5.211 5 C -0.210 4.210 6 C -0.061 4.061 7 C 0.214 3.786 8 H 0.114 0.886 9 O -0.385 6.385 10 C -0.603 4.603 11 H 0.095 0.905 12 C -0.118 4.118 13 N -0.517 5.517 14 Si 0.742 3.258 15 H -0.200 1.200 16 H -0.228 1.228 17 H -0.191 1.191 18 O -0.083 6.083 19 H 0.081 0.919 20 H 0.080 0.920 21 H 0.086 0.914 22 H 0.105 0.895 23 H 0.116 0.884 24 H 0.195 0.805 25 H 0.218 0.782 26 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges 2.464 -10.112 4.198 11.223 hybrid contribution 0.251 0.451 -1.084 1.201 sum 2.715 -9.661 3.114 10.507 Atomic orbital electron populations 1.21781 0.93607 1.02255 1.03163 1.19874 0.96501 0.84921 1.04295 1.26031 1.02998 0.97002 0.79376 1.70257 1.16222 1.04082 1.30531 1.22860 1.08740 0.96113 0.93322 1.25192 0.98814 0.85534 0.96530 1.18824 0.94141 0.84219 0.81450 0.88647 1.86388 1.45764 1.68033 1.38310 1.21318 0.93321 1.12002 1.33620 0.90451 1.24970 0.97749 0.94865 0.94262 1.69921 1.29446 1.17776 1.34567 0.86257 0.83439 0.75752 0.80389 1.20017 1.22757 1.19095 1.84348 1.63651 1.22892 1.37441 0.91915 0.92012 0.91432 0.89474 0.88395 0.80459 0.78205 0.92027 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.73 9.90 37.16 0.37 -1.36 15 2 C -0.02 -0.22 6.56 -27.88 -0.18 -0.41 15 3 C 0.15 2.80 7.60 -12.94 -0.10 2.70 15 4 N -0.48 -9.63 11.30 -11.10 -0.13 -9.76 15 5 C -0.07 -1.50 11.80 -17.77 -0.21 -1.71 15 6 C -0.01 -0.15 6.19 -35.69 -0.22 -0.37 15 7 C 0.27 6.45 2.78 -29.03 -0.08 6.37 15 8 H 0.10 2.22 7.20 -51.93 -0.37 1.84 15 9 O -0.58 -13.21 11.02 -38.50 -0.42 -13.63 15 10 C -0.57 -15.62 9.33 -34.44 -0.32 -15.94 15 11 H 0.08 2.36 7.98 -52.49 -0.42 1.94 15 12 C 0.09 2.46 5.47 -17.82 -0.10 2.36 15 13 N -0.88 -26.12 13.96 55.43 0.77 -25.35 15 14 Si 0.91 22.17 26.18 -169.99 -4.45 17.72 15 15 H -0.27 -6.66 7.11 56.52 0.40 -6.26 15 16 H -0.30 -7.20 7.11 56.52 0.40 -6.79 15 17 H -0.27 -6.30 6.54 56.52 0.37 -5.93 15 18 O -0.20 -4.12 10.69 2.11 0.02 -4.10 15 19 H 0.06 0.78 8.14 -51.93 -0.42 0.36 15 20 H 0.06 0.78 8.14 -51.93 -0.42 0.36 15 21 H 0.07 0.58 8.14 -51.93 -0.42 0.16 15 22 H 0.09 0.93 8.14 -51.93 -0.42 0.51 15 23 H 0.10 1.06 8.14 -51.93 -0.42 0.64 15 24 H 0.18 3.24 8.06 -52.48 -0.42 2.82 15 25 H 0.37 7.59 8.96 45.56 0.41 8.00 15 26 H 0.27 7.45 8.31 -40.82 -0.34 7.11 15 LS Contribution 234.74 15.07 3.54 3.54 Total: -1.00 -31.59 234.74 -3.60 -35.18 By element: Atomic # 1 Polarization: 6.84 SS G_CDS: -2.09 Total: 4.75 kcal Atomic # 6 Polarization: -7.51 SS G_CDS: -0.84 Total: -8.36 kcal Atomic # 7 Polarization: -35.75 SS G_CDS: 0.65 Total: -35.11 kcal Atomic # 8 Polarization: -17.33 SS G_CDS: -0.40 Total: -17.73 kcal Atomic # 14 Polarization: 22.17 SS G_CDS: -4.45 Total: 17.72 kcal Total LS contribution 3.54 Total: 3.54 kcal Total: -31.59 -3.60 -35.18 kcal The number of atoms in the molecule is 26 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261288469.mol2 26 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -3.468 kcal (2) G-P(sol) polarization free energy of solvation -31.588 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -35.056 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -3.597 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.185 kcal (6) G-S(sol) free energy of system = (1) + (5) -38.653 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.13 seconds