Wall clock time and date at job start Mon Mar 30 2020 02:11:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31410 * 1 3 3 Si 1.86793 * 120.00403 * 2 1 4 4 H 1.48494 * 109.47359 * 179.97438 * 3 2 1 5 5 H 1.48500 * 109.47252 * 300.00029 * 3 2 1 6 6 H 1.48500 * 109.46988 * 59.99846 * 3 2 1 7 7 C 1.38955 * 119.99346 * 180.02562 * 2 1 3 8 8 H 1.08001 * 119.99352 * 180.02562 * 7 2 1 9 9 N 1.37093 * 120.00432 * 359.97438 * 7 2 1 10 10 O 1.41460 * 124.16007 * 0.02562 * 9 7 2 11 11 C 1.44047 * 107.84304 * 198.74995 * 10 9 7 12 12 H 1.08997 * 110.95774 * 91.44558 * 11 10 9 13 13 C 1.53001 * 110.78947 * 214.84085 * 11 10 9 14 14 C 1.53000 * 117.50223 * 293.12885 * 13 11 10 15 15 C 1.52997 * 117.49889 * 224.50147 * 13 11 10 16 16 C 1.54605 * 102.54574 * 333.10482 * 11 10 9 17 17 C 1.34773 * 124.16226 * 179.97438 * 9 7 2 18 18 O 1.21296 * 126.24480 * 358.82560 * 17 9 7 19 19 H 0.97007 * 119.99970 * 0.02562 * 1 2 3 20 20 H 1.09002 * 115.55911 * 78.81575 * 13 11 10 21 21 H 1.08990 * 117.49990 * 145.01974 * 14 13 11 22 22 H 1.09004 * 117.49237 * 359.97438 * 14 13 11 23 23 H 1.08999 * 117.49685 * 0.02562 * 15 13 11 24 24 H 1.08997 * 117.50044 * 214.98097 * 15 13 11 25 25 H 1.08997 * 110.72827 * 143.50380 * 16 11 10 26 26 H 1.08999 * 110.73249 * 266.80684 * 16 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3141 0.0000 0.0000 3 14 2.2482 1.6176 0.0000 4 1 3.7081 1.3462 0.0006 5 1 1.8895 2.3964 -1.2125 6 1 1.8894 2.3963 1.2125 7 6 2.0087 -1.2035 -0.0005 8 1 3.0887 -1.2035 -0.0001 9 7 1.3232 -2.3907 -0.0005 10 8 -0.0876 -2.4933 -0.0005 11 6 -0.4337 -3.8203 0.4402 12 1 -0.5760 -3.8475 1.5205 13 6 -1.6844 -4.3238 -0.2831 14 6 -3.0062 -3.6122 0.0125 15 6 -2.7558 -5.0191 0.5593 16 6 0.8076 -4.6451 0.0291 17 6 1.9105 -3.6037 -0.0015 18 8 3.1033 -3.8230 -0.0226 19 1 -0.4850 0.8401 -0.0004 20 1 -1.5257 -4.6898 -1.2975 21 1 -3.7170 -3.5100 -0.8073 22 1 -2.9848 -2.7855 0.7227 23 1 -2.5698 -5.1174 1.6288 24 1 -3.3020 -5.8424 0.0990 25 1 1.0228 -5.4141 0.7709 26 1 0.6676 -5.0874 -0.9573 RHF calculation, no. of doubly occupied orbitals= 36 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000261297563.mol2 26 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:11:53 Heat of formation + Delta-G solvation = 8.483575 kcal Electronic energy + Delta-G solvation = -12624.432218 eV Core-core repulsion = 10285.784508 eV Total energy + Delta-G solvation = -2338.647709 eV No. of doubly occupied orbitals = 36 Molecular weight (most abundant/longest-lived isotopes) = 197.084 amu Computer time = 0.14 seconds Orbital eigenvalues (eV) -39.34818 -36.98725 -35.49998 -33.25012 -30.46473 -29.96602 -25.49974 -23.24509 -22.11852 -20.31088 -19.51868 -17.96304 -16.20365 -15.40169 -14.90175 -14.51199 -14.21032 -13.59598 -13.40131 -12.57936 -12.34498 -11.77945 -11.59677 -11.33610 -11.19370 -11.09060 -10.55867 -10.37728 -10.12355 -10.06467 -9.87491 -9.12221 -8.46755 -7.69933 -6.35402 -3.89939 3.11919 3.21372 3.27601 3.47014 3.74063 4.05940 4.28658 4.81864 5.01821 5.15693 5.19118 5.27554 5.54050 5.68093 5.77675 5.80138 5.86757 6.16214 6.29362 6.37881 6.50852 6.57886 7.41449 7.87783 8.37489 8.95747 9.30556 9.84125 10.71380 Molecular weight = 197.08amu Principal moments of inertia in cm(-1) A = 0.039368 B = 0.012843 C = 0.009887 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 711.061217 B = 2179.675563 C = 2831.287936 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.840 5.840 2 C 0.039 3.961 3 Si 0.929 3.071 4 H -0.265 1.265 5 H -0.278 1.278 6 H -0.278 1.278 7 C -0.319 4.319 8 H 0.126 0.874 9 N -0.296 5.296 10 O -0.096 6.096 11 C 0.072 3.928 12 H 0.072 0.928 13 C -0.143 4.143 14 C -0.164 4.164 15 C -0.176 4.176 16 C -0.166 4.166 17 C 0.422 3.578 18 O -0.579 6.579 19 H 0.268 0.732 20 H 0.108 0.892 21 H 0.092 0.908 22 H 0.100 0.900 23 H 0.093 0.907 24 H 0.094 0.906 25 H 0.092 0.908 26 H 0.093 0.907 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.283 -5.248 0.685 8.215 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.476 5.476 2 C -0.169 4.169 3 Si 0.754 3.246 4 H -0.189 1.189 5 H -0.204 1.204 6 H -0.204 1.204 7 C -0.444 4.444 8 H 0.144 0.856 9 N -0.058 5.058 10 O -0.099 6.099 11 C 0.013 3.987 12 H 0.090 0.910 13 C -0.162 4.162 14 C -0.201 4.201 15 C -0.213 4.213 16 C -0.207 4.207 17 C 0.210 3.790 18 O -0.466 6.466 19 H 0.078 0.922 20 H 0.126 0.874 21 H 0.111 0.889 22 H 0.119 0.881 23 H 0.112 0.888 24 H 0.112 0.888 25 H 0.110 0.890 26 H 0.111 0.889 Dipole moment (debyes) X Y Z Total from point charges -6.026 -4.925 0.614 7.807 hybrid contribution 0.025 0.649 0.039 0.651 sum -6.001 -4.276 0.653 7.397 Atomic orbital electron populations 1.70013 1.05727 1.27322 1.44507 1.25393 0.95687 0.99648 0.96182 0.85827 0.79795 0.80957 0.77996 1.18938 1.20362 1.20408 1.19910 0.91369 0.80298 1.52802 0.85649 1.45930 0.92677 1.06053 1.61106 1.91523 1.03127 1.26938 1.88282 1.22771 0.92769 0.85510 0.97625 0.90987 1.22205 0.89532 1.04556 0.99937 1.22847 0.98473 0.95271 1.03527 1.22961 1.02438 0.96235 0.99700 1.22846 0.95077 0.99162 1.03656 1.20197 0.88956 0.83233 0.86577 1.90567 1.14754 1.81983 1.59273 0.92155 0.87376 0.88921 0.88127 0.88812 0.88754 0.88953 0.88852 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.84 -23.67 11.77 55.50 0.65 -23.01 15 2 C 0.04 1.06 5.50 -17.47 -0.10 0.96 15 3 Si 0.93 20.67 29.55 -169.99 -5.02 15.65 15 4 H -0.27 -5.81 7.11 56.52 0.40 -5.40 15 5 H -0.28 -6.08 7.11 56.52 0.40 -5.68 15 6 H -0.28 -6.07 7.11 56.52 0.40 -5.67 15 7 C -0.32 -9.21 9.99 -14.93 -0.15 -9.36 15 8 H 0.13 3.61 7.71 -52.49 -0.40 3.20 15 9 N -0.30 -8.25 3.76 -10.63 -0.04 -8.29 15 10 O -0.10 -2.49 9.84 -11.40 -0.11 -2.60 15 11 C 0.07 1.43 3.90 -25.89 -0.10 1.33 15 12 H 0.07 1.37 8.00 -51.93 -0.42 0.96 15 13 C -0.14 -2.29 5.46 -90.62 -0.49 -2.79 15 14 C -0.16 -2.44 10.25 -26.73 -0.27 -2.71 15 15 C -0.18 -2.23 10.19 -26.73 -0.27 -2.50 15 16 C -0.17 -3.29 6.60 -26.54 -0.18 -3.46 15 17 C 0.42 11.03 8.15 -10.48 -0.09 10.94 15 18 O -0.58 -16.71 17.68 5.54 0.10 -16.61 15 19 H 0.27 7.01 8.31 -40.82 -0.34 6.67 15 20 H 0.11 1.64 7.91 -51.93 -0.41 1.23 15 21 H 0.09 1.23 8.14 -51.93 -0.42 0.81 15 22 H 0.10 1.65 8.14 -51.93 -0.42 1.22 15 23 H 0.09 1.13 8.10 -51.93 -0.42 0.71 15 24 H 0.09 0.99 8.14 -51.93 -0.42 0.57 15 25 H 0.09 1.59 8.14 -51.93 -0.42 1.17 15 26 H 0.09 1.67 7.75 -51.93 -0.40 1.26 15 LS Contribution 234.31 15.07 3.53 3.53 Total: -1.00 -32.47 234.31 -5.42 -37.89 By element: Atomic # 1 Polarization: 3.92 SS G_CDS: -2.88 Total: 1.04 kcal Atomic # 6 Polarization: -5.94 SS G_CDS: -1.65 Total: -7.59 kcal Atomic # 7 Polarization: -31.92 SS G_CDS: 0.61 Total: -31.31 kcal Atomic # 8 Polarization: -19.20 SS G_CDS: -0.01 Total: -19.21 kcal Atomic # 14 Polarization: 20.67 SS G_CDS: -5.02 Total: 15.65 kcal Total LS contribution 3.53 Total: 3.53 kcal Total: -32.47 -5.42 -37.89 kcal The number of atoms in the molecule is 26 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261297563.mol2 26 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 46.374 kcal (2) G-P(sol) polarization free energy of solvation -32.469 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 13.905 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.421 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.890 kcal (6) G-S(sol) free energy of system = (1) + (5) 8.484 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.14 seconds