Wall clock time and date at job start Mon Mar 30 2020 02:11:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31515 * 1 3 3 Si 1.86797 * 120.00298 * 2 1 4 4 H 1.48505 * 109.47008 * 239.99942 * 3 2 1 5 5 H 1.48498 * 109.47010 * 359.97438 * 3 2 1 6 6 H 1.48496 * 109.47289 * 119.99520 * 3 2 1 7 7 C 1.37877 * 119.99382 * 179.97438 * 2 1 3 8 8 H 1.08000 * 119.99828 * 180.02562 * 7 2 1 9 9 C 1.50698 * 120.00544 * 0.02562 * 7 2 1 10 10 N 1.46494 * 109.47293 * 179.97438 * 9 7 2 11 11 O 1.41720 * 124.12707 * 254.99812 * 10 9 7 12 12 C 1.43004 * 107.57874 * 162.54779 * 11 10 9 13 13 C 1.51994 * 122.52873 * 168.83929 * 12 11 10 14 14 C 1.52019 * 122.48199 * 242.22989 * 12 11 10 15 15 C 1.53704 * 103.82648 * 25.47904 * 12 11 10 16 16 C 1.35361 * 124.05879 * 74.97636 * 10 9 7 17 17 O 1.21283 * 126.47470 * 0.92121 * 16 10 9 18 18 H 0.97008 * 119.99743 * 0.02562 * 1 2 3 19 19 H 1.09003 * 109.46853 * 60.00050 * 9 7 2 20 20 H 1.09002 * 109.47140 * 300.00422 * 9 7 2 21 21 H 1.08994 * 117.52574 * 219.21316 * 13 12 11 22 22 H 1.09004 * 117.51959 * 4.37970 * 13 12 11 23 23 H 1.08999 * 117.52885 * 355.55325 * 14 12 11 24 24 H 1.09008 * 117.51836 * 140.72628 * 14 12 11 25 25 H 1.09002 * 110.78996 * 94.34367 * 15 12 11 26 26 H 1.09006 * 110.78954 * 217.61505 * 15 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.1030 1.6963 -1.2125 5 1 1.2843 2.7464 -0.0006 6 1 3.1029 1.6964 1.2125 7 6 2.0044 -1.1941 0.0005 8 1 3.0844 -1.1942 0.0010 9 6 1.2509 -2.4992 0.0005 10 7 2.2028 -3.6127 0.0005 11 8 2.4886 -4.4144 -1.1326 12 6 3.7190 -5.0977 -0.8790 13 6 4.2200 -6.2322 -1.7577 14 6 4.9591 -4.8904 -1.7336 15 6 3.7924 -5.1650 0.6548 16 6 2.9164 -4.0000 1.0836 17 8 2.8676 -3.5101 2.1920 18 1 -0.4850 0.8401 -0.0004 19 1 0.6246 -2.5571 -0.8897 20 1 0.6238 -2.5567 0.8903 21 1 4.6967 -7.0789 -1.2639 22 1 3.6408 -6.4721 -2.6494 23 1 4.8659 -4.2481 -2.6093 24 1 5.9219 -4.8548 -1.2237 25 1 3.3876 -6.1087 1.0204 26 1 4.8171 -5.0259 0.9996 RHF calculation, no. of doubly occupied orbitals= 36 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000261302042.mol2 26 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:11:42 Heat of formation + Delta-G solvation = 8.802805 kcal Electronic energy + Delta-G solvation = -12457.145507 eV Core-core repulsion = 10118.511640 eV Total energy + Delta-G solvation = -2338.633866 eV No. of doubly occupied orbitals = 36 Molecular weight (most abundant/longest-lived isotopes) = 197.084 amu Computer time = 0.17 seconds Orbital eigenvalues (eV) -39.98638 -37.27964 -35.32636 -33.25677 -31.15348 -29.82276 -26.43438 -22.91236 -22.53965 -20.96477 -19.62863 -16.67883 -16.20644 -15.94871 -15.47549 -14.97033 -14.51859 -13.82409 -13.22990 -12.92517 -12.66976 -12.06565 -11.79957 -11.58659 -11.47519 -11.10944 -10.79224 -10.71879 -10.22124 -9.95435 -9.44851 -9.10113 -8.51523 -7.71124 -6.12808 -4.18600 2.61704 3.14134 3.31383 3.34359 3.39386 3.79324 4.23278 4.36473 4.40763 4.74653 4.91112 5.21810 5.44080 5.46518 5.55202 5.69204 5.85601 6.02896 6.07653 6.93337 7.11009 7.32297 7.82207 8.01656 8.15931 8.69796 8.88647 9.46201 10.95087 Molecular weight = 197.08amu Principal moments of inertia in cm(-1) A = 0.046549 B = 0.010245 C = 0.009792 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 601.368167 B = 2732.446792 C = 2858.770576 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.895 5.895 2 C 0.064 3.936 3 Si 0.906 3.094 4 H -0.276 1.276 5 H -0.284 1.284 6 H -0.274 1.274 7 C -0.534 4.534 8 H 0.061 0.939 9 C 0.270 3.730 10 N -0.459 5.459 11 O -0.125 6.125 12 C 0.009 3.991 13 C -0.147 4.147 14 C -0.179 4.179 15 C -0.143 4.143 16 C 0.508 3.492 17 O -0.512 6.512 18 H 0.267 0.733 19 H 0.049 0.951 20 H 0.055 0.945 21 H 0.108 0.892 22 H 0.104 0.896 23 H 0.106 0.894 24 H 0.104 0.896 25 H 0.110 0.890 26 H 0.107 0.893 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.704 -10.363 -3.156 13.293 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.533 5.533 2 C -0.139 4.139 3 Si 0.733 3.267 4 H -0.201 1.201 5 H -0.210 1.210 6 H -0.199 1.199 7 C -0.573 4.573 8 H 0.079 0.921 9 C 0.155 3.845 10 N -0.240 5.240 11 O -0.127 6.127 12 C -0.032 4.032 13 C -0.185 4.185 14 C -0.216 4.216 15 C -0.184 4.184 16 C 0.294 3.706 17 O -0.388 6.388 18 H 0.076 0.924 19 H 0.067 0.933 20 H 0.073 0.927 21 H 0.127 0.873 22 H 0.123 0.877 23 H 0.124 0.876 24 H 0.122 0.878 25 H 0.128 0.872 26 H 0.125 0.875 Dipole moment (debyes) X Y Z Total from point charges 7.276 -9.908 -2.789 12.605 hybrid contribution 0.544 0.835 -0.238 1.025 sum 7.821 -9.072 -3.027 12.355 Atomic orbital electron populations 1.69919 1.06009 1.27552 1.49850 1.24916 0.94980 0.99313 0.94674 0.86427 0.79458 0.82016 0.78818 1.20102 1.20992 1.19934 1.21396 0.93685 0.90143 1.52046 0.92068 1.19605 0.86091 0.79462 0.99303 1.51403 1.43058 1.29647 0.99847 1.90733 1.36804 1.57639 1.27529 1.21945 0.88119 1.00731 0.92422 1.23138 1.01829 0.92237 1.01252 1.23407 0.95976 0.99218 1.02982 1.22375 1.02803 1.00390 0.92786 1.20697 0.81332 0.84177 0.84371 1.90739 1.67144 1.60587 1.20374 0.92359 0.93329 0.92717 0.87330 0.87724 0.87602 0.87798 0.87205 0.87489 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -26.48 13.29 55.43 0.74 -25.74 15 2 C 0.06 1.84 5.46 -17.82 -0.10 1.74 15 3 Si 0.91 22.05 29.54 -169.99 -5.02 17.03 15 4 H -0.28 -6.56 7.11 56.52 0.40 -6.15 15 5 H -0.28 -6.74 7.11 56.52 0.40 -6.33 15 6 H -0.27 -6.67 7.11 56.52 0.40 -6.27 15 7 C -0.53 -15.60 9.27 -34.44 -0.32 -15.92 15 8 H 0.06 1.80 7.81 -52.49 -0.41 1.39 15 9 C 0.27 7.36 5.99 -5.20 -0.03 7.33 15 10 N -0.46 -10.91 3.74 -60.87 -0.23 -11.14 15 11 O -0.13 -2.60 12.36 -11.53 -0.14 -2.74 15 12 C 0.01 0.14 3.28 -91.26 -0.30 -0.16 15 13 C -0.15 -1.62 10.42 -27.14 -0.28 -1.90 15 14 C -0.18 -2.26 10.42 -27.12 -0.28 -2.54 15 15 C -0.14 -2.23 6.85 -26.90 -0.18 -2.42 15 16 C 0.51 11.33 8.12 -10.11 -0.08 11.25 15 17 O -0.51 -13.17 17.83 5.55 0.10 -13.07 15 18 H 0.27 7.42 8.31 -40.82 -0.34 7.08 15 19 H 0.05 1.34 8.14 -51.93 -0.42 0.92 15 20 H 0.06 1.58 8.14 -51.93 -0.42 1.15 15 21 H 0.11 0.91 8.14 -51.93 -0.42 0.49 15 22 H 0.10 1.10 8.14 -51.93 -0.42 0.67 15 23 H 0.11 1.39 8.14 -51.93 -0.42 0.97 15 24 H 0.10 1.11 8.14 -51.92 -0.42 0.69 15 25 H 0.11 1.43 8.14 -51.93 -0.42 1.01 15 26 H 0.11 1.42 8.13 -51.93 -0.42 1.00 15 LS Contribution 239.13 15.07 3.60 3.60 Total: -1.00 -32.62 239.13 -5.46 -38.07 By element: Atomic # 1 Polarization: -0.46 SS G_CDS: -2.93 Total: -3.39 kcal Atomic # 6 Polarization: -1.04 SS G_CDS: -1.58 Total: -2.62 kcal Atomic # 7 Polarization: -37.39 SS G_CDS: 0.51 Total: -36.88 kcal Atomic # 8 Polarization: -15.77 SS G_CDS: -0.04 Total: -15.81 kcal Atomic # 14 Polarization: 22.05 SS G_CDS: -5.02 Total: 17.03 kcal Total LS contribution 3.60 Total: 3.60 kcal Total: -32.62 -5.46 -38.07 kcal The number of atoms in the molecule is 26 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261302042.mol2 26 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 46.875 kcal (2) G-P(sol) polarization free energy of solvation -32.616 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 14.260 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.457 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.073 kcal (6) G-S(sol) free energy of system = (1) + (5) 8.803 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.17 seconds