Wall clock time and date at job start Mon Mar 30 2020 02:11:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31515 * 1 3 3 Si 1.86797 * 120.00298 * 2 1 4 4 H 1.48505 * 109.47008 * 239.99942 * 3 2 1 5 5 H 1.48498 * 109.47010 * 359.97438 * 3 2 1 6 6 H 1.48496 * 109.47289 * 119.99520 * 3 2 1 7 7 C 1.37877 * 119.99382 * 179.97438 * 2 1 3 8 8 H 1.08000 * 119.99828 * 180.02562 * 7 2 1 9 9 C 1.50698 * 120.00544 * 0.02562 * 7 2 1 10 10 N 1.46494 * 109.47293 * 179.97438 * 9 7 2 11 11 O 1.41720 * 124.12707 * 254.99812 * 10 9 7 12 12 C 1.43004 * 107.57874 * 162.54779 * 11 10 9 13 13 C 1.51994 * 122.52873 * 168.83929 * 12 11 10 14 14 C 1.52019 * 122.48199 * 242.22989 * 12 11 10 15 15 C 1.53704 * 103.82648 * 25.47904 * 12 11 10 16 16 C 1.35361 * 124.05879 * 74.97636 * 10 9 7 17 17 O 1.21283 * 126.47470 * 0.92121 * 16 10 9 18 18 H 0.97008 * 119.99743 * 0.02562 * 1 2 3 19 19 H 1.09003 * 109.46853 * 60.00050 * 9 7 2 20 20 H 1.09002 * 109.47140 * 300.00422 * 9 7 2 21 21 H 1.08994 * 117.52574 * 219.21316 * 13 12 11 22 22 H 1.09004 * 117.51959 * 4.37970 * 13 12 11 23 23 H 1.08999 * 117.52885 * 355.55325 * 14 12 11 24 24 H 1.09008 * 117.51836 * 140.72628 * 14 12 11 25 25 H 1.09002 * 110.78996 * 94.34367 * 15 12 11 26 26 H 1.09006 * 110.78954 * 217.61505 * 15 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.1030 1.6963 -1.2125 5 1 1.2843 2.7464 -0.0006 6 1 3.1029 1.6964 1.2125 7 6 2.0044 -1.1941 0.0005 8 1 3.0844 -1.1942 0.0010 9 6 1.2509 -2.4992 0.0005 10 7 2.2028 -3.6127 0.0005 11 8 2.4886 -4.4144 -1.1326 12 6 3.7190 -5.0977 -0.8790 13 6 4.2200 -6.2322 -1.7577 14 6 4.9591 -4.8904 -1.7336 15 6 3.7924 -5.1650 0.6548 16 6 2.9164 -4.0000 1.0836 17 8 2.8676 -3.5101 2.1920 18 1 -0.4850 0.8401 -0.0004 19 1 0.6246 -2.5571 -0.8897 20 1 0.6238 -2.5567 0.8903 21 1 4.6967 -7.0789 -1.2639 22 1 3.6408 -6.4721 -2.6494 23 1 4.8659 -4.2481 -2.6093 24 1 5.9219 -4.8548 -1.2237 25 1 3.3876 -6.1087 1.0204 26 1 4.8171 -5.0259 0.9996 RHF calculation, no. of doubly occupied orbitals= 36 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000261302042.mol2 26 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:11:42 Heat of formation + Delta-G solvation = -14.205955 kcal Electronic energy + Delta-G solvation = -12458.143241 eV Core-core repulsion = 10118.511640 eV Total energy + Delta-G solvation = -2339.631601 eV No. of doubly occupied orbitals = 36 Molecular weight (most abundant/longest-lived isotopes) = 197.084 amu Computer time = 0.16 seconds Orbital eigenvalues (eV) -41.50275 -38.87630 -36.81921 -35.31608 -33.01917 -31.35091 -28.38382 -24.94928 -23.46337 -22.39561 -21.22586 -18.83375 -17.99492 -17.48911 -16.87172 -16.63219 -16.18988 -15.37366 -14.81622 -14.55502 -14.39437 -13.82622 -13.52429 -13.22481 -12.95431 -12.70643 -12.38352 -12.36779 -11.91579 -11.80169 -10.91162 -10.82283 -10.66145 -9.52352 -8.32792 -6.49703 0.98331 1.35426 1.39701 1.46009 1.49454 2.33949 2.67072 2.95056 3.01951 3.22364 3.43811 3.89653 4.26189 4.46343 4.56953 4.71831 4.75682 4.87595 4.96434 4.98535 5.20182 5.31315 5.61562 5.82862 6.42734 6.54237 6.99671 7.22153 8.74545 Molecular weight = 197.08amu Principal moments of inertia in cm(-1) A = 0.046549 B = 0.010245 C = 0.009792 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 601.368167 B = 2732.446792 C = 2858.770576 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.923 5.923 2 C 0.014 3.986 3 Si 0.976 3.024 4 H -0.263 1.263 5 H -0.270 1.270 6 H -0.273 1.273 7 C -0.558 4.558 8 H 0.051 0.949 9 C 0.281 3.719 10 N -0.476 5.476 11 O -0.140 6.140 12 C -0.040 4.040 13 C -0.104 4.104 14 C -0.177 4.177 15 C -0.119 4.119 16 C 0.490 3.510 17 O -0.561 6.561 18 H 0.273 0.727 19 H 0.033 0.967 20 H 0.025 0.975 21 H 0.149 0.851 22 H 0.111 0.889 23 H 0.095 0.905 24 H 0.129 0.871 25 H 0.141 0.859 26 H 0.137 0.863 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.836 -11.387 -3.941 15.554 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.562 5.562 2 C -0.186 4.186 3 Si 0.799 3.201 4 H -0.188 1.188 5 H -0.195 1.195 6 H -0.198 1.198 7 C -0.596 4.596 8 H 0.069 0.931 9 C 0.164 3.836 10 N -0.254 5.254 11 O -0.143 6.143 12 C -0.080 4.080 13 C -0.141 4.141 14 C -0.214 4.214 15 C -0.159 4.159 16 C 0.280 3.720 17 O -0.441 6.441 18 H 0.082 0.918 19 H 0.051 0.949 20 H 0.043 0.957 21 H 0.166 0.834 22 H 0.129 0.871 23 H 0.113 0.887 24 H 0.147 0.853 25 H 0.159 0.841 26 H 0.155 0.845 Dipole moment (debyes) X Y Z Total from point charges 9.421 -10.969 -3.598 14.901 hybrid contribution -0.109 1.061 -0.051 1.067 sum 9.312 -9.909 -3.649 14.079 Atomic orbital electron populations 1.70021 1.07479 1.28892 1.49799 1.25873 0.95975 1.03068 0.93683 0.85342 0.78328 0.77337 0.79083 1.18803 1.19489 1.19838 1.21595 0.93331 0.91542 1.53164 0.93059 1.19059 0.86596 0.80810 0.97118 1.51165 1.42859 1.29441 1.01938 1.90683 1.40028 1.57473 1.26147 1.22610 0.87700 1.04468 0.93239 1.23390 0.99034 0.91958 0.99757 1.23572 0.95670 1.00363 1.01771 1.22371 1.02677 0.98118 0.92697 1.21896 0.81410 0.85448 0.83267 1.90686 1.68656 1.62605 1.22120 0.91790 0.94898 0.95729 0.83350 0.87075 0.88692 0.85325 0.84093 0.84546 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -55.85 13.29 21.45 0.28 -55.57 15 2 C 0.01 0.82 5.46 84.65 0.46 1.29 15 3 Si 0.98 45.44 29.54 68.60 2.03 47.47 15 4 H -0.26 -11.68 7.11 99.48 0.71 -10.97 15 5 H -0.27 -11.88 7.11 99.48 0.71 -11.18 15 6 H -0.27 -12.62 7.11 99.48 0.71 -11.91 15 7 C -0.56 -33.73 9.27 25.60 0.24 -33.50 15 8 H 0.05 3.12 7.81 -2.91 -0.02 3.09 15 9 C 0.28 16.17 5.99 85.63 0.51 16.68 15 10 N -0.48 -23.31 3.74 -464.55 -1.74 -25.05 15 11 O -0.14 -5.82 12.36 -39.05 -0.48 -6.30 15 12 C -0.04 -1.15 3.28 -11.21 -0.04 -1.19 15 13 C -0.10 -1.80 10.42 30.33 0.32 -1.48 15 14 C -0.18 -3.85 10.42 30.34 0.32 -3.54 15 15 C -0.12 -3.40 6.85 30.48 0.21 -3.19 15 16 C 0.49 22.15 8.12 87.96 0.71 22.86 15 17 O -0.56 -29.80 17.83 -3.04 -0.05 -29.85 15 18 H 0.27 15.33 8.31 -92.70 -0.77 14.56 15 19 H 0.03 1.94 8.14 -2.39 -0.02 1.92 15 20 H 0.02 1.53 8.14 -2.39 -0.02 1.52 15 21 H 0.15 1.47 8.14 -2.39 -0.02 1.45 15 22 H 0.11 1.84 8.14 -2.38 -0.02 1.82 15 23 H 0.09 2.29 8.14 -2.39 -0.02 2.27 15 24 H 0.13 2.16 8.14 -2.38 -0.02 2.14 15 25 H 0.14 3.13 8.14 -2.39 -0.02 3.11 15 26 H 0.14 3.10 8.13 -2.38 -0.02 3.08 15 Total: -1.00 -74.41 239.13 3.94 -70.47 By element: Atomic # 1 Polarization: -0.27 SS G_CDS: 1.17 Total: 0.90 kcal Atomic # 6 Polarization: -4.80 SS G_CDS: 2.73 Total: -2.06 kcal Atomic # 7 Polarization: -79.17 SS G_CDS: -1.45 Total: -80.62 kcal Atomic # 8 Polarization: -35.62 SS G_CDS: -0.54 Total: -36.16 kcal Atomic # 14 Polarization: 45.44 SS G_CDS: 2.03 Total: 47.47 kcal Total: -74.41 3.94 -70.47 kcal The number of atoms in the molecule is 26 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261302042.mol2 26 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 56.265 kcal (2) G-P(sol) polarization free energy of solvation -74.412 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -18.147 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.941 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.471 kcal (6) G-S(sol) free energy of system = (1) + (5) -14.206 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.16 seconds