Wall clock time and date at job start Mon Mar 30 2020 02:13:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31464 * 1 3 3 Si 1.86805 * 119.99634 * 2 1 4 4 H 1.48493 * 109.46866 * 179.97438 * 3 2 1 5 5 H 1.48502 * 109.47103 * 299.99886 * 3 2 1 6 6 H 1.48504 * 109.46963 * 59.99988 * 3 2 1 7 7 C 1.38881 * 120.00496 * 179.97438 * 2 1 3 8 8 H 1.08001 * 120.00147 * 188.99676 * 7 2 1 9 9 N 1.37196 * 119.99860 * 8.99345 * 7 2 1 10 10 C 1.33958 * 125.49787 * 193.12503 * 9 7 2 11 11 O 1.21504 * 123.06439 * 0.05523 * 10 9 7 12 12 O 1.33756 * 113.87929 * 180.02562 * 10 9 7 13 13 C 1.45640 * 109.59541 * 0.02562 * 12 10 9 14 14 H 1.08997 * 111.98381 * 238.80602 * 13 12 10 15 15 C 1.54178 * 109.27876 * 113.19289 * 13 12 10 16 16 C 1.54854 * 104.30535 * 272.15432 * 15 13 12 17 17 C 1.57404 * 102.93657 * 321.72581 * 16 15 13 18 18 C 1.47028 * 125.49529 * 13.15386 * 9 7 2 19 19 H 1.09001 * 112.04445 * 301.01521 * 18 9 7 20 20 H 0.97001 * 120.00565 * 0.02562 * 1 2 3 21 21 H 1.09000 * 110.46435 * 30.86323 * 15 13 12 22 22 H 1.09002 * 110.46623 * 153.32164 * 15 13 12 23 23 H 1.08998 * 110.75781 * 80.15065 * 16 15 13 24 24 H 1.09000 * 110.75583 * 203.34552 * 16 15 13 25 25 H 1.08999 * 111.63176 * 279.52687 * 17 16 15 26 26 H 1.09004 * 110.45166 * 156.14374 * 17 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3146 0.0000 0.0000 3 14 2.2486 1.6178 0.0000 4 1 3.7085 1.3465 0.0006 5 1 1.8898 2.3965 -1.2125 6 1 1.8897 2.3965 1.2125 7 6 2.0092 -1.2027 0.0005 8 1 3.0792 -1.2083 0.1468 9 7 1.3359 -2.3837 -0.1847 10 6 1.8349 -3.6067 0.0382 11 8 2.9657 -3.7984 0.4391 12 8 0.9746 -4.5978 -0.2202 13 6 -0.2889 -4.0398 -0.6821 14 1 -1.1222 -4.3333 -0.0436 15 6 -0.5061 -4.4255 -2.1590 16 6 0.1981 -3.2998 -2.9558 17 6 -0.1361 -2.0113 -2.1158 18 6 -0.0495 -2.5110 -0.6603 19 1 -0.7547 -1.9947 -0.0091 20 1 -0.4851 0.8400 -0.0004 21 1 -0.0450 -5.3897 -2.3728 22 1 -1.5703 -4.4526 -2.3933 23 1 1.2743 -3.4682 -2.9934 24 1 -0.2147 -3.2222 -3.9617 25 1 -1.1375 -1.6391 -2.3321 26 1 0.6074 -1.2350 -2.2970 RHF calculation, no. of doubly occupied orbitals= 36 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000261312990.mol2 26 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:13:14 Heat of formation + Delta-G solvation = -70.447371 kcal Electronic energy + Delta-G solvation = -13207.486845 eV Core-core repulsion = 10865.416433 eV Total energy + Delta-G solvation = -2342.070412 eV No. of doubly occupied orbitals = 36 Molecular weight (most abundant/longest-lived isotopes) = 197.084 amu Computer time = 0.16 seconds Orbital eigenvalues (eV) -40.72455 -36.39132 -35.24258 -33.66105 -31.41474 -27.55872 -27.06520 -25.07723 -20.81214 -20.27924 -20.02487 -17.57340 -16.23961 -15.44610 -15.07599 -14.48442 -14.30084 -13.75736 -13.21484 -12.95966 -12.30512 -11.78480 -11.32689 -11.18368 -10.85166 -10.74048 -10.44963 -10.36771 -10.19611 -10.12701 -9.63426 -9.24975 -9.05853 -7.90515 -6.37442 -3.94379 3.12220 3.21775 3.28056 3.90095 4.03370 4.23219 4.89664 4.99977 5.04712 5.25534 5.38213 5.71209 5.93180 6.04457 6.09899 6.22241 6.33572 6.40948 6.60329 6.88198 7.13829 7.15348 7.47970 8.18301 8.48922 9.02519 9.30176 9.90911 10.68192 Molecular weight = 197.08amu Principal moments of inertia in cm(-1) A = 0.043241 B = 0.015819 C = 0.013050 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 647.382518 B = 1769.614841 C = 2145.107125 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.888 5.888 2 C 0.029 3.971 3 Si 0.931 3.069 4 H -0.268 1.268 5 H -0.280 1.280 6 H -0.281 1.281 7 C -0.285 4.285 8 H 0.104 0.896 9 N -0.454 5.454 10 C 0.582 3.418 11 O -0.575 6.575 12 O -0.349 6.349 13 C 0.052 3.948 14 H 0.106 0.894 15 C -0.129 4.129 16 C -0.134 4.134 17 C -0.101 4.101 18 C 0.118 3.882 19 H 0.126 0.874 20 H 0.268 0.732 21 H 0.074 0.926 22 H 0.079 0.921 23 H 0.063 0.937 24 H 0.063 0.937 25 H 0.066 0.934 26 H 0.081 0.919 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.374 -1.818 -4.936 7.520 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.528 5.528 2 C -0.173 4.173 3 Si 0.758 3.242 4 H -0.193 1.193 5 H -0.206 1.206 6 H -0.207 1.207 7 C -0.411 4.411 8 H 0.122 0.878 9 N -0.187 5.187 10 C 0.336 3.664 11 O -0.467 6.467 12 O -0.260 6.260 13 C -0.005 4.005 14 H 0.124 0.876 15 C -0.166 4.166 16 C -0.171 4.171 17 C -0.140 4.140 18 C 0.013 3.987 19 H 0.144 0.856 20 H 0.079 0.921 21 H 0.092 0.908 22 H 0.097 0.903 23 H 0.082 0.918 24 H 0.081 0.919 25 H 0.085 0.915 26 H 0.100 0.900 Dipole moment (debyes) X Y Z Total from point charges -4.911 -1.978 -4.712 7.087 hybrid contribution 0.156 0.943 -0.005 0.956 sum -4.755 -1.036 -4.716 6.777 Atomic orbital electron populations 1.69825 1.05661 1.27331 1.50023 1.25193 0.95726 0.99355 0.96993 0.85765 0.79676 0.80941 0.77812 1.19263 1.20608 1.20679 1.19445 0.92842 0.80664 1.48134 0.87792 1.43642 1.11737 1.04267 1.59013 1.18417 0.85173 0.80434 0.82378 1.90828 1.16228 1.84519 1.55124 1.87081 1.24488 1.33674 1.80788 1.24606 0.85424 0.94613 0.95823 0.87585 1.22606 1.00991 0.99610 0.93408 1.23024 1.00372 0.95492 0.98234 1.22797 1.01683 0.96473 0.93028 1.22914 0.87336 0.90863 0.97590 0.85643 0.92150 0.90761 0.90256 0.91782 0.91852 0.91545 0.90021 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -22.31 9.96 55.49 0.55 -21.75 15 2 C 0.03 0.74 4.77 -17.47 -0.08 0.66 15 3 Si 0.93 20.17 29.56 -169.99 -5.03 15.14 15 4 H -0.27 -5.85 7.11 56.52 0.40 -5.45 15 5 H -0.28 -5.94 7.11 56.52 0.40 -5.54 15 6 H -0.28 -6.07 7.11 56.52 0.40 -5.66 15 7 C -0.28 -7.82 9.37 -14.91 -0.14 -7.96 15 8 H 0.10 2.97 7.73 -52.49 -0.41 2.57 15 9 N -0.45 -11.94 2.76 -111.61 -0.31 -12.25 15 10 C 0.58 15.90 8.79 53.69 0.47 16.37 15 11 O -0.58 -17.59 17.56 -19.11 -0.34 -17.92 15 12 O -0.35 -8.24 10.72 -37.80 -0.40 -8.65 15 13 C 0.05 0.99 4.77 -25.19 -0.12 0.87 15 14 H 0.11 1.71 8.14 -51.93 -0.42 1.28 15 15 C -0.13 -2.00 6.51 -25.14 -0.16 -2.17 15 16 C -0.13 -2.27 6.97 -23.35 -0.16 -2.43 15 17 C -0.10 -1.99 5.79 -23.74 -0.14 -2.13 15 18 C 0.12 2.59 2.98 -66.13 -0.20 2.39 15 19 H 0.13 2.92 6.57 -51.93 -0.34 2.58 15 20 H 0.27 6.39 8.31 -40.82 -0.34 6.05 15 21 H 0.07 1.13 8.11 -51.93 -0.42 0.70 15 22 H 0.08 0.99 8.14 -51.93 -0.42 0.57 15 23 H 0.06 1.22 8.14 -51.93 -0.42 0.80 15 24 H 0.06 0.90 8.14 -51.93 -0.42 0.47 15 25 H 0.07 1.18 8.14 -51.93 -0.42 0.76 15 26 H 0.08 1.84 6.98 -51.93 -0.36 1.48 15 LS Contribution 220.24 15.07 3.32 3.32 Total: -1.00 -30.38 220.24 -5.51 -35.89 By element: Atomic # 1 Polarization: 3.39 SS G_CDS: -2.78 Total: 0.61 kcal Atomic # 6 Polarization: 6.13 SS G_CDS: -0.53 Total: 5.60 kcal Atomic # 7 Polarization: -34.25 SS G_CDS: 0.24 Total: -34.00 kcal Atomic # 8 Polarization: -25.83 SS G_CDS: -0.74 Total: -26.57 kcal Atomic # 14 Polarization: 20.17 SS G_CDS: -5.03 Total: 15.14 kcal Total LS contribution 3.32 Total: 3.32 kcal Total: -30.38 -5.51 -35.89 kcal The number of atoms in the molecule is 26 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261312990.mol2 26 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -34.553 kcal (2) G-P(sol) polarization free energy of solvation -30.381 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -64.934 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.514 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.894 kcal (6) G-S(sol) free energy of system = (1) + (5) -70.447 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.16 seconds