Wall clock time and date at job start Mon Mar 30 2020 02:13:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31464 * 1 3 3 Si 1.86805 * 119.99634 * 2 1 4 4 H 1.48493 * 109.46866 * 179.97438 * 3 2 1 5 5 H 1.48502 * 109.47103 * 299.99886 * 3 2 1 6 6 H 1.48504 * 109.46963 * 59.99988 * 3 2 1 7 7 C 1.38881 * 120.00496 * 179.97438 * 2 1 3 8 8 H 1.08001 * 120.00147 * 188.99676 * 7 2 1 9 9 N 1.37196 * 119.99860 * 8.99345 * 7 2 1 10 10 C 1.33958 * 125.49787 * 193.12503 * 9 7 2 11 11 O 1.21504 * 123.06439 * 0.05523 * 10 9 7 12 12 O 1.33756 * 113.87929 * 180.02562 * 10 9 7 13 13 C 1.45640 * 109.59541 * 0.02562 * 12 10 9 14 14 H 1.08997 * 111.98381 * 238.80602 * 13 12 10 15 15 C 1.54178 * 109.27876 * 113.19289 * 13 12 10 16 16 C 1.54854 * 104.30535 * 272.15432 * 15 13 12 17 17 C 1.57404 * 102.93657 * 321.72581 * 16 15 13 18 18 C 1.47028 * 125.49529 * 13.15386 * 9 7 2 19 19 H 1.09001 * 112.04445 * 301.01521 * 18 9 7 20 20 H 0.97001 * 120.00565 * 0.02562 * 1 2 3 21 21 H 1.09000 * 110.46435 * 30.86323 * 15 13 12 22 22 H 1.09002 * 110.46623 * 153.32164 * 15 13 12 23 23 H 1.08998 * 110.75781 * 80.15065 * 16 15 13 24 24 H 1.09000 * 110.75583 * 203.34552 * 16 15 13 25 25 H 1.08999 * 111.63176 * 279.52687 * 17 16 15 26 26 H 1.09004 * 110.45166 * 156.14374 * 17 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3146 0.0000 0.0000 3 14 2.2486 1.6178 0.0000 4 1 3.7085 1.3465 0.0006 5 1 1.8898 2.3965 -1.2125 6 1 1.8897 2.3965 1.2125 7 6 2.0092 -1.2027 0.0005 8 1 3.0792 -1.2083 0.1468 9 7 1.3359 -2.3837 -0.1847 10 6 1.8349 -3.6067 0.0382 11 8 2.9657 -3.7984 0.4391 12 8 0.9746 -4.5978 -0.2202 13 6 -0.2889 -4.0398 -0.6821 14 1 -1.1222 -4.3333 -0.0436 15 6 -0.5061 -4.4255 -2.1590 16 6 0.1981 -3.2998 -2.9558 17 6 -0.1361 -2.0113 -2.1158 18 6 -0.0495 -2.5110 -0.6603 19 1 -0.7547 -1.9947 -0.0091 20 1 -0.4851 0.8400 -0.0004 21 1 -0.0450 -5.3897 -2.3728 22 1 -1.5703 -4.4526 -2.3933 23 1 1.2743 -3.4682 -2.9934 24 1 -0.2147 -3.2222 -3.9617 25 1 -1.1375 -1.6391 -2.3321 26 1 0.6074 -1.2350 -2.2970 RHF calculation, no. of doubly occupied orbitals= 36 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000261312990.mol2 26 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:13:13 Heat of formation + Delta-G solvation = -90.432871 kcal Electronic energy + Delta-G solvation = -13208.353481 eV Core-core repulsion = 10865.416433 eV Total energy + Delta-G solvation = -2342.937048 eV No. of doubly occupied orbitals = 36 Molecular weight (most abundant/longest-lived isotopes) = 197.084 amu Computer time = 0.17 seconds Orbital eigenvalues (eV) -42.55417 -38.33973 -37.13153 -35.45877 -33.42392 -29.09826 -28.71271 -27.05198 -22.69639 -21.87322 -21.73552 -19.47156 -18.00542 -17.32137 -17.09641 -16.25758 -15.99023 -15.51257 -14.98971 -14.71509 -14.04006 -13.55030 -12.97145 -12.93747 -12.56955 -12.39770 -12.10655 -12.03994 -11.94794 -11.60828 -11.32680 -11.18573 -11.12011 -9.90477 -8.36864 -6.03078 1.36835 1.42444 1.55166 1.98766 2.08451 2.43344 3.07454 3.15947 3.48630 3.69778 4.00084 4.19959 4.47499 4.55147 4.71754 4.75387 4.92318 5.01436 5.11374 5.33790 5.42759 5.46642 5.50703 6.14209 6.48913 6.96729 7.28572 7.85305 8.66697 Molecular weight = 197.08amu Principal moments of inertia in cm(-1) A = 0.043241 B = 0.015819 C = 0.013050 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 647.382518 B = 1769.614841 C = 2145.107125 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.887 5.887 2 C 0.009 3.991 3 Si 0.995 3.005 4 H -0.277 1.277 5 H -0.264 1.264 6 H -0.272 1.272 7 C -0.332 4.332 8 H 0.077 0.923 9 N -0.456 5.456 10 C 0.565 3.435 11 O -0.627 6.627 12 O -0.354 6.354 13 C 0.047 3.953 14 H 0.141 0.859 15 C -0.116 4.116 16 C -0.128 4.128 17 C -0.096 4.096 18 C 0.108 3.892 19 H 0.112 0.888 20 H 0.278 0.722 21 H 0.082 0.918 22 H 0.126 0.874 23 H 0.032 0.968 24 H 0.101 0.899 25 H 0.090 0.910 26 H 0.046 0.954 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.528 -1.280 -6.105 9.776 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.525 5.525 2 C -0.193 4.193 3 Si 0.818 3.182 4 H -0.201 1.201 5 H -0.189 1.189 6 H -0.197 1.197 7 C -0.458 4.458 8 H 0.095 0.905 9 N -0.187 5.187 10 C 0.320 3.680 11 O -0.523 6.523 12 O -0.265 6.265 13 C -0.008 4.008 14 H 0.159 0.841 15 C -0.153 4.153 16 C -0.166 4.166 17 C -0.134 4.134 18 C 0.004 3.996 19 H 0.129 0.871 20 H 0.088 0.912 21 H 0.101 0.899 22 H 0.144 0.856 23 H 0.051 0.949 24 H 0.119 0.881 25 H 0.109 0.891 26 H 0.064 0.936 Dipole moment (debyes) X Y Z Total from point charges -7.137 -1.445 -5.901 9.372 hybrid contribution 0.707 0.850 0.366 1.165 sum -6.429 -0.595 -5.535 8.504 Atomic orbital electron populations 1.69888 1.06242 1.28712 1.47635 1.25920 0.96699 1.01525 0.95187 0.84855 0.77959 0.76840 0.78571 1.20143 1.18862 1.19686 1.19403 0.92355 0.82209 1.51829 0.90545 1.43849 1.13306 1.03631 1.57959 1.18610 0.85274 0.81290 0.82858 1.90748 1.18554 1.85444 1.57563 1.87035 1.25783 1.32810 1.80875 1.25167 0.84286 0.92236 0.99126 0.84112 1.22669 1.03678 0.99038 0.89933 1.22991 0.98962 0.94508 1.00097 1.22716 1.01831 0.96854 0.92005 1.23146 0.84594 0.93313 0.98562 0.87055 0.91210 0.89922 0.85605 0.94938 0.88092 0.89147 0.93553 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -43.60 9.96 21.65 0.22 -43.39 15 2 C 0.01 0.47 4.77 84.90 0.41 0.87 15 3 Si 0.99 40.95 29.56 68.60 2.03 42.98 15 4 H -0.28 -11.74 7.11 99.48 0.71 -11.03 15 5 H -0.26 -10.19 7.11 99.48 0.71 -9.48 15 6 H -0.27 -10.80 7.11 99.48 0.71 -10.10 15 7 C -0.33 -18.89 9.37 84.01 0.79 -18.10 15 8 H 0.08 4.65 7.73 -2.91 -0.02 4.63 15 9 N -0.46 -24.64 2.76 -738.81 -2.04 -26.68 15 10 C 0.57 31.98 8.79 129.92 1.14 33.12 15 11 O -0.63 -40.38 17.56 19.67 0.35 -40.04 15 12 O -0.35 -16.73 10.72 -47.17 -0.51 -17.24 15 13 C 0.05 1.69 4.77 31.59 0.15 1.84 15 14 H 0.14 4.03 8.14 -2.39 -0.02 4.01 15 15 C -0.12 -3.15 6.51 31.63 0.21 -2.94 15 16 C -0.13 -4.02 6.97 32.78 0.23 -3.79 15 17 C -0.10 -3.61 5.79 32.53 0.19 -3.42 15 18 C 0.11 4.64 2.98 45.87 0.14 4.78 15 19 H 0.11 5.09 6.57 -2.39 -0.02 5.07 15 20 H 0.28 12.66 8.31 -92.71 -0.77 11.89 15 21 H 0.08 2.19 8.11 -2.39 -0.02 2.17 15 22 H 0.13 2.35 8.14 -2.39 -0.02 2.33 15 23 H 0.03 1.21 8.14 -2.39 -0.02 1.19 15 24 H 0.10 2.43 8.14 -2.39 -0.02 2.41 15 25 H 0.09 2.94 8.14 -2.39 -0.02 2.92 15 26 H 0.05 2.07 6.98 -2.39 -0.02 2.06 15 Total: -1.00 -68.41 220.24 4.47 -63.95 By element: Atomic # 1 Polarization: 6.89 SS G_CDS: 1.18 Total: 8.07 kcal Atomic # 6 Polarization: 9.10 SS G_CDS: 3.24 Total: 12.35 kcal Atomic # 7 Polarization: -68.24 SS G_CDS: -1.83 Total: -70.07 kcal Atomic # 8 Polarization: -57.12 SS G_CDS: -0.16 Total: -57.28 kcal Atomic # 14 Polarization: 40.95 SS G_CDS: 2.03 Total: 42.98 kcal Total: -68.41 4.47 -63.95 kcal The number of atoms in the molecule is 26 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261312990.mol2 26 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -26.484 kcal (2) G-P(sol) polarization free energy of solvation -68.415 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -94.899 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.466 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.949 kcal (6) G-S(sol) free energy of system = (1) + (5) -90.433 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.17 seconds