Wall clock time and date at job start Mon Mar 30 2020 02:25:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46502 * 1 3 3 C 1.34140 * 118.70322 * 2 1 4 4 O 1.21227 * 119.36112 * 0.51512 * 3 2 1 5 5 C 1.50591 * 121.27803 * 180.54745 * 3 2 1 6 6 C 1.53234 * 109.16219 * 330.90120 * 5 3 2 7 7 C 1.53239 * 108.56868 * 55.61519 * 6 5 3 8 8 H 1.09003 * 109.52503 * 64.35444 * 7 6 5 9 9 C 1.50700 * 109.52536 * 184.47950 * 7 6 5 10 10 H 1.07999 * 119.99988 * 359.97438 * 9 7 6 11 11 C 1.37885 * 120.00047 * 180.02562 * 9 7 6 12 12 N 1.31518 * 119.99792 * 359.72305 * 11 9 7 13 13 Si 1.86795 * 120.00009 * 180.02562 * 11 9 7 14 14 H 1.48508 * 109.47021 * 359.97438 * 13 11 9 15 15 H 1.48500 * 109.47081 * 119.99727 * 13 11 9 16 16 H 1.48501 * 109.47213 * 240.00099 * 13 11 9 17 17 C 1.34140 * 118.70826 * 180.02562 * 2 1 3 18 18 O 1.21230 * 119.35839 * 359.44891 * 17 2 1 19 19 H 1.08995 * 109.46945 * 0.02562 * 1 2 3 20 20 H 1.09001 * 109.46948 * 120.00456 * 1 2 3 21 21 H 1.09000 * 109.47091 * 240.00131 * 1 2 3 22 22 H 1.09007 * 109.52232 * 210.99379 * 5 3 2 23 23 H 1.09002 * 109.52065 * 90.80942 * 5 3 2 24 24 H 1.09003 * 109.62415 * 295.89400 * 6 5 3 25 25 H 1.09008 * 109.62362 * 175.34168 * 6 5 3 26 26 H 0.97000 * 119.99468 * 179.97438 * 12 11 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1093 1.1766 0.0000 4 8 1.4680 2.2053 0.0095 5 6 3.6136 1.2442 -0.0123 6 6 4.1787 0.0002 0.6812 7 6 3.6137 -1.2441 -0.0122 8 1 3.9692 -1.2804 -1.0420 9 6 4.0683 -2.4796 0.7213 10 1 4.6975 -2.3884 1.5943 11 6 3.6817 -3.7264 0.2771 12 7 2.9119 -3.8371 -0.7834 13 14 4.2446 -5.2578 1.1867 14 1 5.0911 -4.8644 2.3418 15 1 3.0593 -6.0079 1.6739 16 1 5.0316 -6.1184 0.2673 17 6 2.1094 -1.1765 -0.0005 18 8 1.4682 -2.2053 0.0092 19 1 -0.3633 1.0276 -0.0005 20 1 -0.3633 -0.5139 -0.8900 21 1 -0.3633 -0.5138 0.8900 22 1 3.9424 2.1380 0.5181 23 1 3.9682 1.2798 -1.0424 24 1 3.8836 0.0001 1.7305 25 1 5.2661 0.0002 0.6040 26 1 2.6403 -4.7143 -1.0960 RHF calculation, no. of doubly occupied orbitals= 36 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000261319096.mol2 26 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:25:19 Heat of formation + Delta-G solvation = -85.017005 kcal Electronic energy + Delta-G solvation = -12917.765568 eV Core-core repulsion = 10575.063369 eV Total energy + Delta-G solvation = -2342.702199 eV No. of doubly occupied orbitals = 36 Molecular weight (most abundant/longest-lived isotopes) = 197.084 amu Computer time = 0.15 seconds Orbital eigenvalues (eV) -42.19219 -39.45509 -36.26350 -35.82022 -33.94786 -30.03007 -28.37961 -26.12611 -23.82623 -23.22727 -19.11871 -18.82889 -17.78673 -17.65207 -17.02816 -16.39517 -15.46206 -15.21221 -14.93784 -14.56992 -13.92441 -13.55070 -13.36031 -13.25474 -13.14749 -12.75439 -12.31591 -12.16348 -11.40352 -11.14508 -11.01737 -10.56329 -10.45493 -10.33211 -8.08466 -6.20398 0.92597 1.42815 1.46208 1.56093 1.94827 2.27410 2.49394 3.21606 3.51829 4.13676 4.21776 4.23518 4.44727 4.50148 4.67459 4.77320 4.79373 4.94672 4.98868 5.40382 5.52684 5.79930 6.05473 6.42267 6.71016 6.85134 7.43924 7.49643 8.97600 Molecular weight = 197.08amu Principal moments of inertia in cm(-1) A = 0.056231 B = 0.012806 C = 0.011060 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 497.826348 B = 2185.872186 C = 2530.970074 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.063 3.937 2 N -0.584 5.584 3 C 0.523 3.477 4 O -0.557 6.557 5 C -0.131 4.131 6 C -0.102 4.102 7 C 0.028 3.972 8 H 0.054 0.946 9 C -0.551 4.551 10 H 0.071 0.929 11 C 0.026 3.974 12 N -0.874 5.874 13 Si 0.954 3.046 14 H -0.258 1.258 15 H -0.295 1.295 16 H -0.277 1.277 17 C 0.498 3.502 18 O -0.487 6.487 19 H 0.099 0.901 20 H 0.062 0.938 21 H 0.063 0.937 22 H 0.132 0.868 23 H 0.123 0.877 24 H 0.061 0.939 25 H 0.104 0.896 26 H 0.254 0.746 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.032 7.395 1.472 7.809 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.079 4.079 2 N -0.329 5.329 3 C 0.316 3.684 4 O -0.435 6.435 5 C -0.170 4.170 6 C -0.140 4.140 7 C 0.007 3.993 8 H 0.071 0.929 9 C -0.589 4.589 10 H 0.089 0.911 11 C -0.179 4.179 12 N -0.508 5.508 13 Si 0.780 3.220 14 H -0.182 1.182 15 H -0.221 1.221 16 H -0.203 1.203 17 C 0.289 3.711 18 O -0.355 6.355 19 H 0.118 0.882 20 H 0.081 0.919 21 H 0.082 0.918 22 H 0.150 0.850 23 H 0.141 0.859 24 H 0.079 0.921 25 H 0.122 0.878 26 H 0.063 0.937 Dipole moment (debyes) X Y Z Total from point charges 1.275 7.185 1.358 7.422 hybrid contribution -0.372 -1.207 0.162 1.273 sum 0.903 5.978 1.520 6.234 Atomic orbital electron populations 1.21772 0.79500 1.04029 1.02561 1.47275 1.09686 1.08808 1.67095 1.21644 0.93004 0.81606 0.72123 1.90612 1.69864 1.33950 1.49091 1.22016 0.87188 1.01961 1.05834 1.21693 1.02603 0.90702 0.98973 1.19081 0.85308 0.96095 0.98842 0.92877 1.21129 1.33415 0.90120 1.14198 0.91055 1.25766 0.94172 1.02328 0.95612 1.70205 1.32736 1.23713 1.24170 0.85577 0.77615 0.79639 0.79183 1.18217 1.22139 1.20287 1.23132 0.93656 0.81044 0.73300 1.90656 1.68744 1.33747 1.42385 0.88198 0.91909 0.91776 0.84973 0.85889 0.92058 0.87803 0.93656 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.06 2.30 9.81 127.77 1.25 3.56 15 2 N -0.58 -23.74 2.93 -781.13 -2.29 -26.03 15 3 C 0.52 18.70 7.48 87.72 0.66 19.36 15 4 O -0.56 -21.36 16.19 -2.87 -0.05 -21.41 15 5 C -0.13 -3.60 6.07 29.89 0.18 -3.42 15 6 C -0.10 -3.34 5.31 30.75 0.16 -3.18 15 7 C 0.03 1.26 2.36 -12.24 -0.03 1.23 15 8 H 0.05 2.54 8.14 -2.39 -0.02 2.52 15 9 C -0.55 -28.49 8.47 25.60 0.22 -28.27 15 10 H 0.07 3.51 7.74 -2.91 -0.02 3.49 15 11 C 0.03 1.41 4.84 84.66 0.41 1.82 15 12 N -0.87 -51.24 10.63 21.45 0.23 -51.01 15 13 Si 0.95 43.30 29.54 68.60 2.03 45.32 15 14 H -0.26 -11.01 7.11 99.48 0.71 -10.31 15 15 H -0.29 -13.78 7.11 99.48 0.71 -13.08 15 16 H -0.28 -12.17 7.11 99.48 0.71 -11.46 15 17 C 0.50 24.02 7.07 87.72 0.62 24.64 15 18 O -0.49 -27.72 13.04 -2.87 -0.04 -27.75 15 19 H 0.10 3.28 6.73 -2.39 -0.02 3.26 15 20 H 0.06 2.28 8.14 -2.39 -0.02 2.26 15 21 H 0.06 2.30 8.14 -2.39 -0.02 2.29 15 22 H 0.13 2.81 8.14 -2.38 -0.02 2.79 15 23 H 0.12 2.92 8.14 -2.39 -0.02 2.90 15 24 H 0.06 2.04 8.14 -2.39 -0.02 2.02 15 25 H 0.10 2.90 8.14 -2.38 -0.02 2.89 15 26 H 0.25 14.48 8.31 -92.71 -0.77 13.71 15 Total: -1.00 -66.40 224.84 4.53 -61.87 By element: Atomic # 1 Polarization: 2.11 SS G_CDS: 1.18 Total: 3.28 kcal Atomic # 6 Polarization: 12.26 SS G_CDS: 3.47 Total: 15.73 kcal Atomic # 7 Polarization: -74.98 SS G_CDS: -2.06 Total: -77.04 kcal Atomic # 8 Polarization: -49.08 SS G_CDS: -0.08 Total: -49.16 kcal Atomic # 14 Polarization: 43.30 SS G_CDS: 2.03 Total: 45.32 kcal Total: -66.40 4.53 -61.87 kcal The number of atoms in the molecule is 26 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261319096.mol2 26 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -23.151 kcal (2) G-P(sol) polarization free energy of solvation -66.399 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -89.550 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.533 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.866 kcal (6) G-S(sol) free energy of system = (1) + (5) -85.017 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.15 seconds