Wall clock time and date at job start Mon Mar 30 2020 02:25:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46502 * 1 3 3 C 1.34138 * 118.70285 * 2 1 4 4 O 1.21227 * 119.36546 * 359.46621 * 3 2 1 5 5 C 1.50589 * 121.27814 * 179.50208 * 3 2 1 6 6 C 1.53223 * 109.16625 * 29.06967 * 5 3 2 7 7 C 1.53244 * 108.57711 * 304.39816 * 6 5 3 8 8 H 1.09002 * 109.52465 * 295.69753 * 7 6 5 9 9 C 1.50706 * 109.57272 * 175.53699 * 7 6 5 10 10 H 1.08000 * 119.99847 * 0.16437 * 9 7 6 11 11 C 1.37878 * 119.99710 * 180.15807 * 9 7 6 12 12 N 1.31508 * 120.00237 * 0.02562 * 11 9 7 13 13 Si 1.86802 * 119.99600 * 180.02562 * 11 9 7 14 14 H 1.48500 * 109.47119 * 0.02562 * 13 11 9 15 15 H 1.48502 * 109.46916 * 119.99881 * 13 11 9 16 16 H 1.48497 * 109.46974 * 239.99849 * 13 11 9 17 17 C 1.34136 * 118.70529 * 180.02562 * 2 1 3 18 18 O 1.21232 * 119.36146 * 0.53057 * 17 2 1 19 19 H 1.09007 * 109.47187 * 269.98642 * 1 2 3 20 20 H 1.08997 * 109.47024 * 29.98133 * 1 2 3 21 21 H 1.08996 * 109.47360 * 149.98468 * 1 2 3 22 22 H 1.08997 * 109.52574 * 148.97530 * 5 3 2 23 23 H 1.08998 * 109.52221 * 269.15990 * 5 3 2 24 24 H 1.09002 * 109.62420 * 184.66849 * 6 5 3 25 25 H 1.08994 * 109.60361 * 64.12070 * 6 5 3 26 26 H 0.97004 * 119.99762 * 179.97438 * 12 11 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1092 1.1766 0.0000 4 8 1.4681 2.2054 -0.0098 5 6 3.6136 1.2442 0.0112 6 6 4.1783 0.0002 -0.6825 7 6 3.6136 -1.2442 0.0110 8 1 3.9689 -1.2800 1.0409 9 6 4.0676 -2.4803 -0.7218 10 1 4.6984 -2.3901 -1.5938 11 6 3.6777 -3.7265 -0.2789 12 7 2.9093 -3.8363 0.7827 13 14 4.2411 -5.2587 -1.1868 14 1 5.0918 -4.8666 -2.3391 15 1 5.0239 -6.1206 -0.2650 16 1 3.0561 -6.0070 -1.6776 17 6 2.1093 -1.1765 -0.0005 18 8 1.4681 -2.2053 -0.0108 19 1 -0.3634 -0.0002 1.0277 20 1 -0.3633 0.8901 -0.5135 21 1 -0.3634 -0.8898 -0.5140 22 1 3.9420 2.1378 -0.5195 23 1 3.9689 1.2799 1.0410 24 1 5.2656 0.0002 -0.6060 25 1 3.8825 0.0005 -1.7316 26 1 2.6347 -4.7131 1.0940 RHF calculation, no. of doubly occupied orbitals= 36 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000261319097.mol2 26 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:25:20 Heat of formation + Delta-G solvation = -85.033978 kcal Electronic energy + Delta-G solvation = -12918.510705 eV Core-core repulsion = 10575.807770 eV Total energy + Delta-G solvation = -2342.702935 eV No. of doubly occupied orbitals = 36 Molecular weight (most abundant/longest-lived isotopes) = 197.084 amu Computer time = 0.16 seconds Orbital eigenvalues (eV) -42.18954 -39.45417 -36.26540 -35.82165 -33.94401 -30.02557 -28.38511 -26.12508 -23.81915 -23.23049 -19.12026 -18.81916 -17.80683 -17.64236 -17.01364 -16.39458 -15.49464 -15.19089 -14.93777 -14.56854 -13.84454 -13.54477 -13.37726 -13.34491 -13.12132 -12.74360 -12.31737 -12.15722 -11.40717 -11.14503 -11.02411 -10.57538 -10.44896 -10.31777 -8.08350 -6.20272 0.92918 1.42980 1.46290 1.56221 1.94905 2.27521 2.49460 3.21892 3.52583 4.12739 4.21458 4.23107 4.45433 4.49920 4.67464 4.77670 4.79739 4.94743 4.98904 5.40482 5.52768 5.80048 6.05458 6.42450 6.71373 6.85156 7.43797 7.49673 8.97723 Molecular weight = 197.08amu Principal moments of inertia in cm(-1) A = 0.056240 B = 0.012809 C = 0.011062 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 497.745212 B = 2185.384931 C = 2530.581840 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.064 3.936 2 N -0.584 5.584 3 C 0.523 3.477 4 O -0.556 6.556 5 C -0.131 4.131 6 C -0.102 4.102 7 C 0.028 3.972 8 H 0.053 0.947 9 C -0.551 4.551 10 H 0.071 0.929 11 C 0.026 3.974 12 N -0.873 5.873 13 Si 0.954 3.046 14 H -0.258 1.258 15 H -0.278 1.278 16 H -0.294 1.294 17 C 0.498 3.502 18 O -0.487 6.487 19 H 0.064 0.936 20 H 0.090 0.910 21 H 0.071 0.929 22 H 0.132 0.868 23 H 0.123 0.877 24 H 0.103 0.897 25 H 0.061 0.939 26 H 0.254 0.746 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.015 7.292 -1.551 7.723 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.078 4.078 2 N -0.328 5.328 3 C 0.316 3.684 4 O -0.435 6.435 5 C -0.170 4.170 6 C -0.140 4.140 7 C 0.007 3.993 8 H 0.071 0.929 9 C -0.589 4.589 10 H 0.089 0.911 11 C -0.178 4.178 12 N -0.508 5.508 13 Si 0.780 3.220 14 H -0.182 1.182 15 H -0.203 1.203 16 H -0.221 1.221 17 C 0.289 3.711 18 O -0.356 6.356 19 H 0.083 0.917 20 H 0.108 0.892 21 H 0.090 0.910 22 H 0.150 0.850 23 H 0.141 0.859 24 H 0.122 0.878 25 H 0.080 0.920 26 H 0.063 0.937 Dipole moment (debyes) X Y Z Total from point charges 1.261 7.082 -1.435 7.335 hybrid contribution -0.371 -1.185 -0.145 1.250 sum 0.890 5.897 -1.579 6.169 Atomic orbital electron populations 1.21754 0.79500 1.03591 1.02964 1.47269 1.09688 1.08810 1.67077 1.21624 0.92961 0.81541 0.72302 1.90622 1.69983 1.33967 1.48911 1.22013 0.87218 1.01964 1.05815 1.21689 1.02601 0.90698 0.98980 1.19081 0.85309 0.96092 0.98834 0.92894 1.21125 1.33316 0.90115 1.14304 0.91053 1.25758 0.94177 1.02315 0.95595 1.70198 1.32775 1.23754 1.24091 0.85579 0.77633 0.79652 0.79165 1.18222 1.20321 1.22113 1.23145 0.93686 0.81105 0.73191 1.90652 1.68675 1.33717 1.42508 0.91684 0.89152 0.91048 0.84989 0.85928 0.87816 0.92038 0.93650 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.06 2.32 10.00 127.77 1.28 3.60 15 2 N -0.58 -23.72 2.93 -781.14 -2.29 -26.01 15 3 C 0.52 18.74 7.48 87.72 0.66 19.40 15 4 O -0.56 -21.50 16.44 -2.87 -0.05 -21.54 15 5 C -0.13 -3.61 6.07 29.89 0.18 -3.43 15 6 C -0.10 -3.34 5.31 30.75 0.16 -3.18 15 7 C 0.03 1.27 2.36 -12.24 -0.03 1.24 15 8 H 0.05 2.54 8.14 -2.39 -0.02 2.52 15 9 C -0.55 -28.45 8.47 25.60 0.22 -28.24 15 10 H 0.07 3.51 7.75 -2.91 -0.02 3.49 15 11 C 0.03 1.43 4.83 84.66 0.41 1.84 15 12 N -0.87 -51.17 10.63 21.45 0.23 -50.94 15 13 Si 0.95 43.24 29.54 68.60 2.03 45.27 15 14 H -0.26 -11.00 7.11 99.48 0.71 -10.30 15 15 H -0.28 -12.19 7.11 99.48 0.71 -11.48 15 16 H -0.29 -13.75 7.11 99.48 0.71 -13.04 15 17 C 0.50 23.97 7.07 87.72 0.62 24.59 15 18 O -0.49 -27.62 12.54 -2.88 -0.04 -27.66 15 19 H 0.06 2.22 8.14 -2.38 -0.02 2.20 15 20 H 0.09 2.95 7.28 -2.39 -0.02 2.94 15 21 H 0.07 2.71 7.28 -2.39 -0.02 2.70 15 22 H 0.13 2.82 8.14 -2.39 -0.02 2.80 15 23 H 0.12 2.93 8.14 -2.39 -0.02 2.91 15 24 H 0.10 2.90 8.14 -2.39 -0.02 2.88 15 25 H 0.06 2.04 8.14 -2.39 -0.02 2.02 15 26 H 0.25 14.46 8.31 -92.71 -0.77 13.69 15 Total: -1.00 -66.30 224.44 4.56 -61.74 By element: Atomic # 1 Polarization: 2.16 SS G_CDS: 1.18 Total: 3.33 kcal Atomic # 6 Polarization: 12.31 SS G_CDS: 3.50 Total: 15.81 kcal Atomic # 7 Polarization: -74.89 SS G_CDS: -2.06 Total: -76.95 kcal Atomic # 8 Polarization: -49.12 SS G_CDS: -0.08 Total: -49.20 kcal Atomic # 14 Polarization: 43.24 SS G_CDS: 2.03 Total: 45.27 kcal Total: -66.30 4.56 -61.74 kcal The number of atoms in the molecule is 26 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261319097.mol2 26 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -23.293 kcal (2) G-P(sol) polarization free energy of solvation -66.298 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -89.591 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.557 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.741 kcal (6) G-S(sol) free energy of system = (1) + (5) -85.034 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.16 seconds