Wall clock time and date at job start Mon Mar 30 2020 02:01:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45201 * 1 3 3 C 1.34850 * 116.99640 * 2 1 4 4 O 1.21573 * 120.00013 * 0.02562 * 3 2 1 5 5 C 1.46801 * 119.99604 * 179.97438 * 3 2 1 6 6 C 1.38245 * 127.33845 * 179.97438 * 5 3 2 7 7 N 1.33369 * 106.18885 * 180.02562 * 6 5 3 8 8 N 1.28444 * 109.65439 * 359.97438 * 7 6 5 9 9 N 1.28694 * 110.97697 * 0.02562 * 8 7 6 10 10 C 1.37102 * 126.07356 * 179.73872 * 9 8 7 11 11 H 1.08001 * 120.00282 * 180.02562 * 10 9 8 12 12 C 1.39273 * 119.99675 * 0.02562 * 10 9 8 13 13 N 1.31090 * 120.00074 * 0.02562 * 12 10 9 14 14 Si 1.86804 * 119.99877 * 180.02562 * 12 10 9 15 15 H 1.48502 * 109.47162 * 90.00023 * 14 12 10 16 16 H 1.48492 * 109.47040 * 210.00333 * 14 12 10 17 17 H 1.48505 * 109.46839 * 330.00035 * 14 12 10 18 18 H 1.08999 * 109.47447 * 59.99512 * 1 2 3 19 19 H 1.09002 * 109.47463 * 180.02562 * 1 2 3 20 20 H 1.09013 * 109.47333 * 299.99798 * 1 2 3 21 21 H 1.07997 * 126.90237 * 0.02562 * 6 5 3 22 22 H 0.97003 * 120.00091 * 180.02562 * 13 12 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0641 1.2016 0.0000 4 8 1.4019 2.2211 0.0005 5 6 3.5301 1.2784 0.0006 6 6 4.3100 2.4199 0.0002 7 7 5.5773 2.0044 0.0004 8 7 5.6110 0.7204 0.0014 9 7 4.4219 0.2283 0.0014 10 6 4.0997 -1.1043 -0.0027 11 1 3.0637 -1.4094 -0.0027 12 6 5.1084 -2.0645 -0.0068 13 7 6.3659 -1.6942 -0.0063 14 14 4.6695 -3.8802 -0.0131 15 1 4.5523 -4.3563 -1.4148 16 1 5.7321 -4.6488 0.6835 17 1 3.3750 -4.0789 0.6871 18 1 -0.3634 0.5139 -0.8899 19 1 -0.3634 -1.0277 0.0005 20 1 -0.3634 0.5139 0.8901 21 1 3.9627 3.4425 -0.0003 22 1 7.0685 -2.3630 -0.0095 RHF calculation, no. of doubly occupied orbitals= 35 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000261323620.mol2 22 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:01:27 Heat of formation + Delta-G solvation = -17.879283 kcal Electronic energy + Delta-G solvation = -12338.505405 eV Core-core repulsion = 9895.174173 eV Total energy + Delta-G solvation = -2443.331232 eV No. of doubly occupied orbitals = 35 Molecular weight (most abundant/longest-lived isotopes) = 197.059 amu Computer time = 0.14 seconds Orbital eigenvalues (eV) -43.42985 -40.97205 -37.37562 -36.38976 -33.71930 -31.73458 -28.62193 -28.05425 -24.75994 -23.45588 -21.88730 -20.31086 -18.29243 -17.75237 -17.45557 -17.15269 -16.39912 -16.31809 -14.93412 -14.74641 -14.12619 -13.76032 -13.34515 -13.09225 -12.94279 -12.30219 -12.05292 -11.91140 -11.72586 -11.48434 -11.37061 -10.81837 -9.91706 -8.89121 -6.95437 0.29980 1.37502 1.43796 1.62039 1.79261 1.88109 2.04961 2.17528 2.66012 2.80899 3.95489 4.22868 4.38839 4.40883 4.58646 4.71524 4.76249 4.90433 5.30554 5.60349 5.91561 6.22458 6.80009 6.90335 8.07803 8.26170 Molecular weight = 197.06amu Principal moments of inertia in cm(-1) A = 0.032348 B = 0.016451 C = 0.010970 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 865.378487 B = 1701.618549 C = 2551.850129 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.028 3.972 2 O -0.360 6.360 3 C 0.565 3.435 4 O -0.545 6.545 5 C -0.234 4.234 6 C 0.004 3.996 7 N -0.375 5.375 8 N -0.157 5.157 9 N -0.053 5.053 10 C -0.307 4.307 11 H 0.164 0.836 12 C 0.000 4.000 13 N -0.774 5.774 14 Si 1.033 2.967 15 H -0.253 1.253 16 H -0.263 1.263 17 H -0.237 1.237 18 H 0.064 0.936 19 H 0.136 0.864 20 H 0.064 0.936 21 H 0.200 0.800 22 H 0.300 0.700 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.035 -6.376 0.002 11.058 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.065 4.065 2 O -0.276 6.276 3 C 0.413 3.587 4 O -0.436 6.436 5 C -0.359 4.359 6 C -0.171 4.171 7 N -0.222 5.222 8 N -0.133 5.133 9 N 0.166 4.834 10 C -0.449 4.449 11 H 0.181 0.819 12 C -0.220 4.220 13 N -0.400 5.400 14 Si 0.848 3.152 15 H -0.177 1.177 16 H -0.188 1.188 17 H -0.160 1.160 18 H 0.083 0.917 19 H 0.154 0.846 20 H 0.082 0.918 21 H 0.217 0.783 22 H 0.111 0.889 Dipole moment (debyes) X Y Z Total from point charges -7.414 -6.257 0.011 9.701 hybrid contribution -1.071 0.040 -0.014 1.072 sum -8.485 -6.217 -0.003 10.519 Atomic orbital electron populations 1.23611 0.74332 1.05867 1.02663 1.86643 1.25337 1.31317 1.84296 1.19158 0.85787 0.81775 0.71983 1.90742 1.65816 1.36398 1.50672 1.21210 0.89724 0.89469 1.35499 1.23773 0.88743 0.98843 1.05725 1.74541 1.20477 1.04852 1.22286 1.78700 1.02692 1.02166 1.29695 1.44098 1.03732 1.07510 1.28098 1.21792 0.98602 0.76269 1.48283 0.81875 1.27426 0.93609 1.08150 0.92788 1.70209 1.01526 1.39542 1.28735 0.84401 0.80259 0.70226 0.80339 1.17749 1.18750 1.15955 0.91727 0.84607 0.91763 0.78320 0.88867 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.72 10.57 113.37 1.20 1.92 14 2 O -0.36 -13.74 8.15 -57.63 -0.47 -14.21 14 3 C 0.57 25.46 7.93 70.06 0.56 26.02 14 4 O -0.54 -24.72 16.73 19.60 0.33 -24.39 14 5 C -0.23 -12.06 6.99 40.45 0.28 -11.78 14 6 C 0.00 0.23 11.94 84.46 1.01 1.23 14 7 N -0.37 -21.32 12.33 -56.70 -0.70 -22.02 14 8 N -0.16 -9.37 10.97 37.02 0.41 -8.97 14 9 N -0.05 -2.93 3.50 -179.16 -0.63 -3.56 14 10 C -0.31 -15.26 9.92 84.12 0.83 -14.43 14 11 H 0.16 7.21 5.73 -2.91 -0.02 7.20 14 12 C 0.00 -0.02 5.50 85.05 0.47 0.45 14 13 N -0.77 -39.52 11.87 21.70 0.26 -39.26 14 14 Si 1.03 32.60 29.55 68.60 2.03 34.63 14 15 H -0.25 -7.61 7.11 99.48 0.71 -6.90 14 16 H -0.26 -7.99 7.11 99.48 0.71 -7.28 14 17 H -0.24 -6.77 7.11 99.48 0.71 -6.06 14 18 H 0.06 1.59 8.14 -2.39 -0.02 1.57 14 19 H 0.14 2.39 8.14 -2.39 -0.02 2.37 14 20 H 0.06 1.59 8.14 -2.38 -0.02 1.57 14 21 H 0.20 8.50 8.06 -2.91 -0.02 8.48 14 22 H 0.30 13.49 8.30 -92.71 -0.77 12.72 14 Total: -1.00 -67.51 213.77 6.82 -60.69 By element: Atomic # 1 Polarization: 12.42 SS G_CDS: 1.25 Total: 13.67 kcal Atomic # 6 Polarization: -0.94 SS G_CDS: 4.35 Total: 3.41 kcal Atomic # 7 Polarization: -73.15 SS G_CDS: -0.66 Total: -73.81 kcal Atomic # 8 Polarization: -38.45 SS G_CDS: -0.14 Total: -38.59 kcal Atomic # 14 Polarization: 32.60 SS G_CDS: 2.03 Total: 34.63 kcal Total: -67.51 6.82 -60.69 kcal The number of atoms in the molecule is 22 The average number of expansion shells was 14.00 The maximum number of expansion shells was 14 The minimum number of expansion shells was 14 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261323620.mol2 22 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 42.811 kcal (2) G-P(sol) polarization free energy of solvation -67.513 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -24.702 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.823 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.690 kcal (6) G-S(sol) free energy of system = (1) + (5) -17.879 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.14 seconds