Wall clock time and date at job start Mon Mar 30 2020 02:06:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31418 * 1 3 3 Si 1.86799 * 120.00145 * 2 1 4 4 H 1.48497 * 109.46916 * 270.00149 * 3 2 1 5 5 H 1.48508 * 109.47113 * 29.99916 * 3 2 1 6 6 H 1.48495 * 109.46965 * 149.99997 * 3 2 1 7 7 C 1.38953 * 119.99635 * 179.97438 * 2 1 3 8 8 H 1.08001 * 120.00019 * 0.02562 * 7 2 1 9 9 N 1.37101 * 119.99675 * 179.97438 * 7 2 1 10 10 C 1.34777 * 119.99663 * 180.02562 * 9 7 2 11 11 O 1.21291 * 120.00066 * 0.02562 * 10 9 7 12 12 C 1.50703 * 119.99813 * 180.02562 * 10 9 7 13 13 C 1.50695 * 109.46917 * 180.02562 * 12 10 9 14 14 N 1.31070 * 126.66395 * 304.95247 * 13 12 10 15 15 N 1.28838 * 107.99206 * 180.02562 * 14 13 12 16 16 N 1.28737 * 109.39886 * 0.02562 * 15 14 13 17 17 N 1.29021 * 108.80997 * 359.97438 * 16 15 14 18 18 H 0.96996 * 126.44238 * 180.26211 * 17 16 15 19 19 H 0.97001 * 119.99451 * 359.97438 * 1 2 3 20 20 H 0.96998 * 119.99868 * 0.02562 * 9 7 2 21 21 H 1.08997 * 109.47104 * 59.99578 * 12 10 9 22 22 H 1.09000 * 109.46683 * 300.00020 * 12 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3142 0.0000 0.0000 3 14 2.2482 1.6177 0.0000 4 1 2.4957 2.0463 -1.4001 5 1 1.4456 2.6527 0.7001 6 1 3.5457 1.4401 0.7000 7 6 2.0089 -1.2034 0.0005 8 1 1.4688 -2.1387 0.0005 9 7 3.3799 -1.2034 0.0000 10 6 4.0537 -2.3707 0.0000 11 8 3.4472 -3.4210 0.0000 12 6 5.5607 -2.3707 0.0000 13 6 6.0629 -3.7915 -0.0006 14 7 5.7559 -4.7306 0.8607 15 7 6.3859 -5.8023 0.5225 16 7 7.0873 -5.5712 -0.5320 17 7 6.9147 -4.3424 -0.8854 18 1 7.3196 -3.8998 -1.6476 19 1 -0.4849 0.8401 0.0004 20 1 3.8648 -0.3634 -0.0004 21 1 5.9240 -1.8569 0.8899 22 1 5.9240 -1.8569 -0.8900 RHF calculation, no. of doubly occupied orbitals= 35 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000306149195.mol2 22 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:06:37 Heat of formation + Delta-G solvation = 48.999334 kcal Electronic energy + Delta-G solvation = -11890.988183 eV Core-core repulsion = 9482.849776 eV Total energy + Delta-G solvation = -2408.138406 eV No. of doubly occupied orbitals = 35 Molecular weight (most abundant/longest-lived isotopes) = 197.065 amu Computer time = 0.13 seconds Orbital eigenvalues (eV) -45.23378 -40.27798 -36.11325 -35.72378 -34.47381 -33.73634 -30.43464 -26.77181 -25.23067 -23.90746 -21.37846 -20.46662 -19.77958 -18.22413 -17.38585 -16.83917 -16.16566 -15.99205 -15.01971 -14.49469 -14.40149 -14.05777 -13.45539 -13.13090 -12.84306 -12.51552 -12.38241 -12.17742 -11.95005 -11.49484 -11.22300 -10.51684 -10.24826 -8.38825 -6.01651 0.18028 1.16873 1.35335 1.40933 1.44800 1.51360 1.92784 2.27836 2.86760 3.01964 3.18108 3.46857 4.10299 4.21236 4.44669 4.55693 4.60767 5.54918 5.70235 5.95736 6.57823 6.88313 7.37253 7.54087 7.94635 8.78696 Molecular weight = 197.07amu Principal moments of inertia in cm(-1) A = 0.083597 B = 0.008377 C = 0.007848 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 334.859757 B = 3341.504534 C = 3566.936919 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.936 5.936 2 C -0.018 4.018 3 Si 0.969 3.031 4 H -0.254 1.254 5 H -0.282 1.282 6 H -0.219 1.219 7 C -0.330 4.330 8 H 0.051 0.949 9 N -0.579 5.579 10 C 0.450 3.550 11 O -0.617 6.617 12 C -0.043 4.043 13 C 0.222 3.778 14 N -0.320 5.320 15 N -0.110 5.110 16 N -0.095 5.095 17 N -0.377 5.377 18 H 0.478 0.522 19 H 0.279 0.721 20 H 0.396 0.604 21 H 0.163 0.837 22 H 0.173 0.827 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 17.625 4.796 -3.613 18.620 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.576 5.576 2 C -0.216 4.216 3 Si 0.788 3.212 4 H -0.178 1.178 5 H -0.207 1.207 6 H -0.142 1.142 7 C -0.460 4.460 8 H 0.069 0.931 9 N -0.220 5.220 10 C 0.236 3.764 11 O -0.502 6.502 12 C -0.086 4.086 13 C -0.059 4.059 14 N -0.170 5.170 15 N -0.105 5.105 16 N -0.083 5.083 17 N -0.112 5.112 18 H 0.332 0.668 19 H 0.088 0.912 20 H 0.233 0.767 21 H 0.180 0.820 22 H 0.191 0.809 Dipole moment (debyes) X Y Z Total from point charges 17.059 2.794 -2.975 17.540 hybrid contribution -0.276 1.609 -0.823 1.828 sum 16.783 4.403 -3.798 17.762 Atomic orbital electron populations 1.69828 1.08496 1.29375 1.49924 1.26234 0.96483 1.03120 0.95790 0.85324 0.79819 0.75989 0.80099 1.17830 1.20735 1.14205 1.18971 0.81570 0.94820 1.50611 0.93126 1.41837 1.05629 1.07413 1.67163 1.20442 0.90157 0.83585 0.82179 1.90668 1.71382 1.33001 1.55134 1.20290 0.90890 0.86337 1.11082 1.25697 0.92520 0.99417 0.88250 1.75043 1.19235 0.97150 1.25526 1.78615 1.06066 1.19249 1.06584 1.78652 1.20150 0.98056 1.11398 1.46047 1.32696 1.07928 1.24560 0.66847 0.91156 0.76733 0.81982 0.80905 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -55.15 13.96 21.66 0.30 -54.84 14 2 C -0.02 -0.94 5.50 84.93 0.47 -0.47 14 3 Si 0.97 35.49 27.74 68.60 1.90 37.39 14 4 H -0.25 -8.67 7.11 99.48 0.71 -7.96 14 5 H -0.28 -10.62 7.11 99.48 0.71 -9.92 14 6 H -0.22 -6.27 6.52 99.48 0.65 -5.62 14 7 C -0.33 -18.45 10.16 84.04 0.85 -17.59 14 8 H 0.05 3.46 7.39 -2.91 -0.02 3.44 14 9 N -0.58 -24.30 5.09 -306.98 -1.56 -25.87 14 10 C 0.45 18.07 7.77 87.66 0.68 18.75 14 11 O -0.62 -33.25 15.17 -3.06 -0.05 -33.29 14 12 C -0.04 -0.95 6.33 29.10 0.18 -0.77 14 13 C 0.22 6.21 7.19 138.13 0.99 7.20 14 14 N -0.32 -12.33 11.75 -50.45 -0.59 -12.92 14 15 N -0.11 -4.09 13.43 37.01 0.50 -3.60 14 16 N -0.10 -2.78 13.48 37.02 0.50 -2.28 14 17 N -0.38 -7.87 7.03 -50.55 -0.36 -8.23 14 18 H 0.48 4.11 8.96 -220.41 -1.98 2.13 14 19 H 0.28 15.01 8.31 -92.71 -0.77 14.24 14 20 H 0.40 12.67 5.76 -92.71 -0.53 12.14 14 21 H 0.16 2.42 8.14 -2.39 -0.02 2.40 14 22 H 0.17 1.60 8.14 -2.39 -0.02 1.58 14 Total: -1.00 -86.65 212.04 2.55 -84.10 By element: Atomic # 1 Polarization: 13.70 SS G_CDS: -1.28 Total: 12.42 kcal Atomic # 6 Polarization: 3.94 SS G_CDS: 3.18 Total: 7.12 kcal Atomic # 7 Polarization: -106.52 SS G_CDS: -1.21 Total: -107.74 kcal Atomic # 8 Polarization: -33.25 SS G_CDS: -0.05 Total: -33.29 kcal Atomic # 14 Polarization: 35.49 SS G_CDS: 1.90 Total: 37.39 kcal Total: -86.65 2.55 -84.10 kcal The number of atoms in the molecule is 22 The average number of expansion shells was 14.00 The maximum number of expansion shells was 14 The minimum number of expansion shells was 14 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000306149195.mol2 22 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 133.099 kcal (2) G-P(sol) polarization free energy of solvation -86.645 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 46.453 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.546 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -84.099 kcal (6) G-S(sol) free energy of system = (1) + (5) 48.999 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.13 seconds