Wall clock time and date at job start Mon Mar 30 2020 02:00:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42904 * 1 3 3 C 1.35624 * 116.99404 * 2 1 4 4 C 1.39453 * 119.54217 * 180.02562 * 3 2 1 5 5 C 1.38927 * 119.47320 * 180.29717 * 4 3 2 6 6 F 1.35103 * 120.69050 * 179.71909 * 5 4 3 7 7 C 1.38642 * 118.60772 * 359.47872 * 5 4 3 8 8 C 1.40466 * 119.06772 * 0.49123 * 7 5 4 9 9 C 1.41356 * 119.77881 * 179.74561 * 8 7 5 10 10 H 1.07999 * 120.00194 * 0.03164 * 9 8 7 11 11 C 1.40022 * 120.00164 * 180.02562 * 9 8 7 12 12 N 1.30752 * 119.99563 * 359.97438 * 11 9 8 13 13 Si 1.86795 * 120.00466 * 180.02562 * 11 9 8 14 14 H 1.48498 * 109.47028 * 0.02562 * 13 11 9 15 15 H 1.48505 * 109.47330 * 119.99879 * 13 11 9 16 16 H 1.48504 * 109.47297 * 239.99903 * 13 11 9 17 17 N 1.31832 * 119.54925 * 0.02562 * 3 2 1 18 18 H 1.08994 * 109.47518 * 60.00505 * 1 2 3 19 19 H 1.09001 * 109.46734 * 180.02562 * 1 2 3 20 20 H 1.08998 * 109.47398 * 299.99951 * 1 2 3 21 21 H 1.08002 * 120.25907 * 0.02562 * 4 3 2 22 22 H 1.08003 * 120.46227 * 180.22548 * 7 5 4 23 23 H 0.96999 * 119.99396 * 179.97438 * 12 11 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0446 1.2085 0.0000 4 6 3.4378 1.2705 -0.0005 5 6 4.0669 2.5091 0.0057 6 9 5.4150 2.5978 0.0111 7 6 3.2823 3.6522 0.0013 8 6 1.8839 3.5201 0.0012 9 6 1.0695 4.6755 0.0022 10 1 1.5229 5.6557 0.0025 11 6 -0.3250 4.5492 0.0026 12 7 -0.8739 3.3625 0.0016 13 14 -1.4012 6.0760 0.0032 14 1 -0.5420 7.2872 0.0024 15 1 -2.2590 6.0775 -1.2091 16 1 -2.2582 6.0771 1.2159 17 7 1.3178 2.3084 0.0005 18 1 -0.3634 0.5137 -0.8900 19 1 -0.3633 -1.0277 0.0005 20 1 -0.3634 0.5138 0.8900 21 1 4.0230 0.3627 -0.0014 22 1 3.7400 4.6305 0.0023 23 1 -1.8399 3.2750 0.0023 RHF calculation, no. of doubly occupied orbitals= 35 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000306825048.mol2 23 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:00:45 Heat of formation + Delta-G solvation = -57.010971 kcal Electronic energy + Delta-G solvation = -12140.203660 eV Core-core repulsion = 9675.255589 eV Total energy + Delta-G solvation = -2464.948071 eV No. of doubly occupied orbitals = 35 Molecular weight (most abundant/longest-lived isotopes) = 197.059 amu Computer time = 0.13 seconds Orbital eigenvalues (eV) -47.93070 -38.82746 -36.50869 -33.60585 -30.16177 -29.67134 -26.84207 -25.33621 -21.59020 -21.43904 -18.16760 -16.89647 -15.61190 -15.08191 -14.94840 -14.79343 -14.39039 -14.22981 -13.70448 -12.96940 -12.28498 -11.89747 -11.38408 -11.31701 -11.10993 -10.76839 -10.59213 -10.17652 -10.06399 -9.27359 -8.06979 -7.97548 -7.40188 -6.64200 -4.77774 2.58476 2.73194 3.00266 3.04752 3.06918 3.80998 4.19765 4.54912 5.52150 5.65784 6.01134 6.11041 6.31520 6.36644 6.52260 6.67442 6.70882 6.95123 7.24724 7.35606 7.74160 7.92845 8.28306 8.47570 8.80448 9.81565 10.09541 Molecular weight = 197.06amu Principal moments of inertia in cm(-1) A = 0.034737 B = 0.014154 C = 0.010112 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 805.855244 B = 1977.725408 C = 2768.433489 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.055 3.945 2 O -0.327 6.327 3 C 0.358 3.642 4 C -0.365 4.365 5 C 0.175 3.825 6 F -0.155 7.155 7 C -0.334 4.334 8 C 0.298 3.702 9 C -0.416 4.416 10 H 0.091 0.909 11 C 0.068 3.932 12 N -0.709 5.709 13 Si 0.914 3.086 14 H -0.259 1.259 15 H -0.272 1.272 16 H -0.272 1.272 17 N -0.535 5.535 18 H 0.057 0.943 19 H 0.070 0.930 20 H 0.057 0.943 21 H 0.113 0.887 22 H 0.113 0.887 23 H 0.274 0.726 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.226 -0.499 0.006 1.324 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.041 4.041 2 O -0.235 6.235 3 C 0.171 3.829 4 C -0.389 4.389 5 C 0.151 3.849 6 F -0.134 7.134 7 C -0.357 4.357 8 C 0.174 3.826 9 C -0.447 4.447 10 H 0.109 0.891 11 C -0.158 4.158 12 N -0.330 5.330 13 Si 0.737 3.263 14 H -0.182 1.182 15 H -0.197 1.197 16 H -0.197 1.197 17 N -0.264 5.264 18 H 0.076 0.924 19 H 0.089 0.911 20 H 0.076 0.924 21 H 0.131 0.869 22 H 0.131 0.869 23 H 0.086 0.914 Dipole moment (debyes) X Y Z Total from point charges -2.176 -0.907 0.005 2.358 hybrid contribution 0.443 0.758 0.004 0.878 sum -1.733 -0.149 0.009 1.740 Atomic orbital electron populations 1.22559 0.78321 0.99941 1.03279 1.86047 1.22205 1.26604 1.88637 1.19604 0.87794 0.85693 0.89843 1.19978 0.92704 0.96141 1.30042 1.17308 0.75370 0.94207 0.98028 1.91368 1.30740 1.97249 1.94043 1.21612 0.95170 0.96193 1.22701 1.17948 0.87820 0.90094 0.86763 1.19716 0.90644 0.92944 1.41381 0.89124 1.26123 0.99024 0.97363 0.93303 1.70120 1.11771 1.23616 1.27481 0.86168 0.79792 0.81644 0.78677 1.18211 1.19686 1.19681 1.68403 1.36249 0.96728 1.24994 0.92399 0.91108 0.92403 0.86933 0.86863 0.91443 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.05 1.08 10.38 101.05 1.05 2.13 14 2 O -0.33 -7.55 10.47 -18.57 -0.19 -7.75 14 3 C 0.36 9.13 7.50 -17.10 -0.13 9.01 14 4 C -0.36 -8.94 10.05 -38.87 -0.39 -9.33 14 5 C 0.18 4.28 7.37 -39.18 -0.29 3.99 14 6 F -0.16 -3.49 17.29 2.25 0.04 -3.45 14 7 C -0.33 -8.39 9.83 -38.59 -0.38 -8.77 14 8 C 0.30 8.02 6.55 -85.01 -0.56 7.46 14 9 C -0.42 -10.64 9.14 -37.73 -0.34 -10.98 14 10 H 0.09 2.15 7.85 -52.49 -0.41 1.74 14 11 C 0.07 1.63 5.50 -17.34 -0.10 1.54 14 12 N -0.71 -17.49 11.46 55.55 0.64 -16.86 14 13 Si 0.91 17.52 29.56 -169.99 -5.02 12.49 14 14 H -0.26 -4.89 7.11 56.52 0.40 -4.49 14 15 H -0.27 -5.15 7.11 56.52 0.40 -4.75 14 16 H -0.27 -5.15 7.11 56.52 0.40 -4.74 14 17 N -0.53 -14.44 6.69 -11.22 -0.08 -14.51 14 18 H 0.06 1.21 8.10 -51.93 -0.42 0.79 14 19 H 0.07 1.10 8.14 -51.93 -0.42 0.68 14 20 H 0.06 1.21 8.10 -51.93 -0.42 0.79 14 21 H 0.11 2.54 8.06 -52.49 -0.42 2.11 14 22 H 0.11 2.62 8.06 -52.48 -0.42 2.20 14 23 H 0.27 6.06 8.29 -40.82 -0.34 5.72 14 LS Contribution 219.70 15.07 3.31 3.31 Total: -1.00 -27.57 219.70 -4.10 -31.67 By element: Atomic # 1 Polarization: 1.71 SS G_CDS: -1.66 Total: 0.05 kcal Atomic # 6 Polarization: -3.82 SS G_CDS: -1.14 Total: -4.95 kcal Atomic # 7 Polarization: -31.93 SS G_CDS: 0.56 Total: -31.37 kcal Atomic # 8 Polarization: -7.55 SS G_CDS: -0.19 Total: -7.75 kcal Atomic # 9 Polarization: -3.49 SS G_CDS: 0.04 Total: -3.45 kcal Atomic # 14 Polarization: 17.52 SS G_CDS: -5.02 Total: 12.49 kcal Total LS contribution 3.31 Total: 3.31 kcal Total: -27.57 -4.10 -31.67 kcal The number of atoms in the molecule is 23 The average number of expansion shells was 14.00 The maximum number of expansion shells was 14 The minimum number of expansion shells was 14 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000306825048.mol2 23 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -25.341 kcal (2) G-P(sol) polarization free energy of solvation -27.571 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -52.912 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.099 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -31.670 kcal (6) G-S(sol) free energy of system = (1) + (5) -57.011 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.13 seconds