Wall clock time and date at job start Mon Mar 30 2020 02:01:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42899 * 1 3 3 C 1.35985 * 117.00112 * 2 1 4 4 C 1.38865 * 120.35093 * 0.02562 * 3 2 1 5 5 N 1.32119 * 121.28587 * 180.02562 * 4 3 2 6 6 C 1.31475 * 122.10414 * 359.97438 * 5 4 3 7 7 C 1.40728 * 120.53178 * 359.97438 * 6 5 4 8 8 C 1.41353 * 120.65494 * 179.97438 * 7 6 5 9 9 H 1.07998 * 119.99722 * 150.36793 * 8 7 6 10 10 C 1.39924 * 120.00044 * 330.37283 * 8 7 6 11 11 N 1.30854 * 120.00299 * 161.82362 * 10 8 7 12 12 Si 1.86799 * 120.00020 * 341.81337 * 10 8 7 13 13 H 1.48504 * 109.46915 * 95.40599 * 12 10 8 14 14 H 1.48500 * 109.47707 * 215.40760 * 12 10 8 15 15 H 1.48500 * 109.47209 * 335.41071 * 12 10 8 16 16 C 1.38836 * 120.35611 * 179.97438 * 3 2 1 17 17 F 1.35107 * 120.95007 * 359.95650 * 16 3 2 18 18 H 1.08990 * 109.47382 * 60.00169 * 1 2 3 19 19 H 1.09003 * 109.47125 * 180.02562 * 1 2 3 20 20 H 1.08999 * 109.47289 * 299.99934 * 1 2 3 21 21 H 1.08004 * 119.35812 * 0.04315 * 4 3 2 22 22 H 1.07997 * 119.73266 * 180.02562 * 6 5 4 23 23 H 0.96990 * 120.00353 * 179.97438 * 11 10 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0464 1.2116 0.0000 4 6 1.2972 2.3809 0.0005 5 7 1.8778 3.5677 0.0000 6 6 3.1852 3.7060 -0.0005 7 6 4.0237 2.5757 0.0000 8 6 5.4297 2.7214 -0.0011 9 1 6.0509 1.9688 0.4616 10 6 6.0166 3.8407 -0.6016 11 7 7.2492 4.1691 -0.3095 12 14 5.0408 4.8660 -1.8206 13 1 4.4250 6.0192 -1.1161 14 1 5.9473 5.3638 -2.8863 15 1 3.9743 4.0303 -2.4283 16 6 3.4324 1.2929 0.0005 17 9 4.1938 0.1768 0.0019 18 1 -0.3633 0.5138 -0.8899 19 1 -0.3633 -1.0277 0.0005 20 1 -0.3634 0.5138 0.8900 21 1 0.2190 2.3189 0.0017 22 1 3.6192 4.6949 -0.0005 23 1 7.6561 4.9447 -0.7260 RHF calculation, no. of doubly occupied orbitals= 35 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000306878406.mol2 23 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:01:21 Heat of formation + Delta-G solvation = -61.747804 kcal Electronic energy + Delta-G solvation = -12209.600454 eV Core-core repulsion = 9744.446978 eV Total energy + Delta-G solvation = -2465.153475 eV No. of doubly occupied orbitals = 35 Molecular weight (most abundant/longest-lived isotopes) = 197.059 amu Computer time = 0.15 seconds Orbital eigenvalues (eV) -47.44255 -39.25537 -37.26359 -34.03692 -31.13838 -29.75851 -27.06347 -25.51096 -22.31548 -21.32583 -18.24037 -17.05797 -16.58317 -15.99398 -15.42840 -15.06279 -14.13256 -14.04308 -13.46241 -13.00572 -12.73527 -12.54324 -12.22704 -11.48322 -11.16325 -11.06332 -10.81683 -10.62158 -10.06585 -9.50373 -8.52250 -8.15053 -7.52351 -7.24942 -4.80443 2.19577 2.30634 2.98805 3.07430 3.17780 3.77907 3.81300 4.28138 5.09365 5.32456 5.39966 5.48078 5.61456 5.74950 5.93190 6.07659 6.53694 6.79968 6.97818 7.17510 7.29829 7.92424 8.02015 8.22306 8.38768 9.16475 9.74538 Molecular weight = 197.06amu Principal moments of inertia in cm(-1) A = 0.051427 B = 0.013446 C = 0.011367 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 544.335186 B = 2081.864435 C = 2462.741843 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.032 3.968 2 O -0.319 6.319 3 C 0.083 3.917 4 C -0.101 4.101 5 N -0.430 5.430 6 C -0.032 4.032 7 C 0.042 3.958 8 C -0.412 4.412 9 H 0.102 0.898 10 C 0.084 3.916 11 N -0.781 5.781 12 Si 0.912 3.088 13 H -0.260 1.260 14 H -0.282 1.282 15 H -0.244 1.244 16 C -0.017 4.017 17 F -0.142 7.142 18 H 0.051 0.949 19 H 0.091 0.909 20 H 0.052 0.948 21 H 0.137 0.863 22 H 0.141 0.859 23 H 0.293 0.707 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.110 -1.582 -1.388 7.415 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.064 4.064 2 O -0.231 6.231 3 C 0.035 3.965 4 C -0.257 4.257 5 N -0.138 5.138 6 C -0.197 4.197 7 C 0.036 3.964 8 C -0.440 4.440 9 H 0.119 0.881 10 C -0.139 4.139 11 N -0.402 5.402 12 Si 0.736 3.264 13 H -0.185 1.185 14 H -0.208 1.208 15 H -0.167 1.167 16 C -0.044 4.044 17 F -0.121 7.121 18 H 0.070 0.930 19 H 0.109 0.891 20 H 0.070 0.930 21 H 0.155 0.845 22 H 0.158 0.842 23 H 0.104 0.896 Dipole moment (debyes) X Y Z Total from point charges -7.273 -1.001 -1.387 7.471 hybrid contribution 0.209 -0.361 -0.445 0.609 sum -7.064 -1.362 -1.832 7.423 Atomic orbital electron populations 1.22910 0.79479 1.02830 1.01158 1.86050 1.20544 1.27116 1.89430 1.19872 0.91220 0.85581 0.99820 1.21744 0.98445 0.86497 1.18982 1.66841 1.13072 1.26108 1.07814 1.22349 0.88124 0.97381 1.11840 1.18505 0.95435 0.89677 0.92755 1.19440 0.90012 1.05471 1.29051 0.88058 1.26236 0.95267 0.96026 0.96354 1.69660 1.13749 1.22944 1.33869 0.86300 0.79966 0.80264 0.79847 1.18501 1.20843 1.16745 1.17220 0.84638 0.83215 1.19298 1.91332 1.75584 1.50093 1.95082 0.93012 0.89071 0.92987 0.84524 0.84189 0.89574 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.44 9.82 101.05 0.99 1.44 14 2 O -0.32 -6.46 10.41 -19.69 -0.21 -6.66 14 3 C 0.08 1.90 6.70 -39.13 -0.26 1.64 14 4 C -0.10 -2.23 10.21 -17.20 -0.18 -2.40 14 5 N -0.43 -10.27 10.33 -12.47 -0.13 -10.40 14 6 C -0.03 -0.80 8.37 -16.76 -0.14 -0.94 14 7 C 0.04 1.10 5.12 -106.62 -0.55 0.56 14 8 C -0.41 -11.01 9.33 -37.77 -0.35 -11.36 14 9 H 0.10 2.86 8.02 -52.49 -0.42 2.44 14 10 C 0.08 2.10 5.41 -17.34 -0.09 2.01 14 11 N -0.78 -19.57 13.93 55.55 0.77 -18.80 14 12 Si 0.91 19.82 24.53 -169.99 -4.17 15.65 14 13 H -0.26 -5.40 6.72 56.52 0.38 -5.03 14 14 H -0.28 -5.79 7.11 56.52 0.40 -5.39 14 15 H -0.24 -5.62 6.85 56.52 0.39 -5.23 14 16 C -0.02 -0.43 7.39 -38.21 -0.28 -0.72 14 17 F -0.14 -3.66 16.78 2.25 0.04 -3.62 14 18 H 0.05 0.67 7.67 -51.93 -0.40 0.27 14 19 H 0.09 1.00 8.14 -51.93 -0.42 0.57 14 20 H 0.05 0.67 7.67 -51.93 -0.40 0.27 14 21 H 0.14 2.50 6.28 -52.48 -0.33 2.17 14 22 H 0.14 3.33 4.73 -52.49 -0.25 3.08 14 23 H 0.29 6.54 8.30 -40.82 -0.34 6.20 14 LS Contribution 209.81 15.07 3.16 3.16 Total: -1.00 -28.32 209.81 -2.78 -31.10 By element: Atomic # 1 Polarization: 0.74 SS G_CDS: -1.39 Total: -0.64 kcal Atomic # 6 Polarization: -8.92 SS G_CDS: -0.86 Total: -9.78 kcal Atomic # 7 Polarization: -29.85 SS G_CDS: 0.64 Total: -29.20 kcal Atomic # 8 Polarization: -6.46 SS G_CDS: -0.21 Total: -6.66 kcal Atomic # 9 Polarization: -3.66 SS G_CDS: 0.04 Total: -3.62 kcal Atomic # 14 Polarization: 19.82 SS G_CDS: -4.17 Total: 15.65 kcal Total LS contribution 3.16 Total: 3.16 kcal Total: -28.32 -2.78 -31.10 kcal The number of atoms in the molecule is 23 The average number of expansion shells was 14.00 The maximum number of expansion shells was 14 The minimum number of expansion shells was 14 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000306878406.mol2 23 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -30.651 kcal (2) G-P(sol) polarization free energy of solvation -28.318 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -58.969 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.779 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -31.097 kcal (6) G-S(sol) free energy of system = (1) + (5) -61.748 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.15 seconds