Wall clock time and date at job start Mon Mar 30 2020 02:01:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42893 * 1 3 3 C 1.35591 * 117.00282 * 2 1 4 4 C 1.38824 * 120.55871 * 359.97438 * 3 2 1 5 5 C 1.38872 * 118.52439 * 180.02562 * 4 3 2 6 6 F 1.35103 * 120.20729 * 179.97438 * 5 4 3 7 7 C 1.39285 * 119.59399 * 359.97438 * 5 4 3 8 8 N 1.31307 * 121.13150 * 0.02562 * 7 5 4 9 9 C 1.33703 * 121.59134 * 0.02562 * 8 7 5 10 10 C 1.40965 * 119.85826 * 179.97438 * 9 8 7 11 11 H 1.08005 * 119.99759 * 179.97438 * 10 9 8 12 12 C 1.40035 * 120.00215 * 359.97438 * 10 9 8 13 13 N 1.30783 * 119.99898 * 0.02562 * 12 10 9 14 14 Si 1.86800 * 120.00045 * 180.02562 * 12 10 9 15 15 H 1.48503 * 109.47246 * 0.02562 * 14 12 10 16 16 H 1.48503 * 109.46998 * 120.00126 * 14 12 10 17 17 H 1.48500 * 109.47185 * 240.00302 * 14 12 10 18 18 H 1.09001 * 109.46987 * 60.00700 * 1 2 3 19 19 H 1.09003 * 109.47563 * 179.97438 * 1 2 3 20 20 H 1.08996 * 109.47531 * 300.00793 * 1 2 3 21 21 H 1.08002 * 120.74375 * 0.04550 * 4 3 2 22 22 H 1.08000 * 119.43449 * 179.72462 * 7 5 4 23 23 H 0.96998 * 120.00030 * 179.97438 * 13 12 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4289 0.0000 0.0000 3 6 2.0446 1.2081 0.0000 4 6 1.2999 2.3797 -0.0005 5 6 1.9740 3.5939 -0.0011 6 9 1.2831 4.7549 -0.0021 7 6 3.3668 3.6074 -0.0005 8 7 4.0565 2.4901 0.0000 9 6 3.4553 1.2959 -0.0005 10 6 4.2318 0.1193 -0.0004 11 1 3.7485 -0.8466 -0.0004 12 6 5.6296 0.2028 -0.0004 13 7 6.2148 1.3724 0.0001 14 14 6.6585 -1.3563 -0.0011 15 1 5.7625 -2.5406 -0.0022 16 1 7.5154 -1.3834 -1.2136 17 1 7.5153 -1.3845 1.2114 18 1 -0.3633 0.5137 -0.8901 19 1 -0.3634 -1.0277 -0.0005 20 1 -0.3634 0.5139 0.8899 21 1 0.2204 2.3478 -0.0002 22 1 3.8883 4.5531 -0.0054 23 1 7.1830 1.4303 0.0005 RHF calculation, no. of doubly occupied orbitals= 35 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000306905954.mol2 23 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:01:00 Heat of formation + Delta-G solvation = -52.897127 kcal Electronic energy + Delta-G solvation = -12107.453659 eV Core-core repulsion = 9642.683978 eV Total energy + Delta-G solvation = -2464.769681 eV No. of doubly occupied orbitals = 35 Molecular weight (most abundant/longest-lived isotopes) = 197.059 amu Computer time = 0.14 seconds Orbital eigenvalues (eV) -47.46869 -38.91934 -36.65080 -33.64694 -30.15776 -29.70463 -26.70513 -25.43237 -21.79657 -21.35302 -17.71893 -17.15316 -16.32135 -15.10989 -14.93788 -14.67960 -14.28174 -14.19095 -13.49254 -12.67395 -12.59720 -12.01940 -11.37745 -11.24793 -11.13355 -10.74117 -10.61548 -10.42950 -9.95590 -9.40145 -8.14808 -7.95052 -7.31988 -6.57186 -4.49278 2.50381 2.71646 3.06482 3.08899 3.12234 3.89283 4.28574 4.58902 5.59147 5.59703 5.72711 5.74347 5.79627 5.95262 6.06309 6.32154 6.64178 7.03996 7.18468 7.27735 7.84708 8.03899 8.17450 8.55684 8.84917 9.85542 10.17899 Molecular weight = 197.06amu Principal moments of inertia in cm(-1) A = 0.039145 B = 0.013280 C = 0.009969 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 715.124072 B = 2107.972386 C = 2807.952472 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.031 3.969 2 O -0.306 6.306 3 C -0.007 4.007 4 C -0.176 4.176 5 C -0.100 4.100 6 F -0.169 7.169 7 C 0.088 3.912 8 N -0.449 5.449 9 C 0.239 3.761 10 C -0.401 4.401 11 H 0.095 0.905 12 C 0.062 3.938 13 N -0.710 5.710 14 Si 0.914 3.086 15 H -0.258 1.258 16 H -0.272 1.272 17 H -0.272 1.272 18 H 0.042 0.958 19 H 0.086 0.914 20 H 0.042 0.958 21 H 0.113 0.887 22 H 0.132 0.868 23 H 0.276 0.724 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.823 -2.307 -0.002 4.465 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.065 4.065 2 O -0.219 6.219 3 C -0.056 4.056 4 C -0.201 4.201 5 C -0.125 4.125 6 F -0.149 7.149 7 C -0.076 4.076 8 N -0.163 5.163 9 C 0.113 3.887 10 C -0.432 4.432 11 H 0.113 0.887 12 C -0.164 4.164 13 N -0.331 5.331 14 Si 0.737 3.263 15 H -0.181 1.181 16 H -0.197 1.197 17 H -0.197 1.197 18 H 0.060 0.940 19 H 0.104 0.896 20 H 0.060 0.940 21 H 0.131 0.869 22 H 0.149 0.851 23 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges -2.647 -2.364 -0.003 3.549 hybrid contribution -0.986 -0.138 -0.001 0.996 sum -3.633 -2.501 -0.004 4.411 Atomic orbital electron populations 1.22802 0.81346 1.02170 1.00170 1.85972 1.18629 1.27315 1.89958 1.20074 0.93193 0.82890 1.09399 1.20919 0.98623 0.91779 1.08728 1.18187 0.90877 0.80490 1.22910 1.91271 1.80100 1.47550 1.95963 1.22695 0.88461 0.98340 0.98142 1.68975 1.34051 0.95577 1.17737 1.18308 0.85070 0.92567 0.92772 1.19660 0.90663 0.93161 1.39728 0.88696 1.26157 0.98812 0.97609 0.93789 1.70140 1.10850 1.24691 1.27447 0.86159 0.79712 0.81752 0.78640 1.18142 1.19704 1.19699 0.93988 0.89558 0.93978 0.86867 0.85097 0.91289 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.52 9.83 101.05 0.99 1.51 14 2 O -0.31 -6.87 9.62 -18.47 -0.18 -7.05 14 3 C -0.01 -0.16 6.73 -38.18 -0.26 -0.42 14 4 C -0.18 -4.11 9.11 -39.13 -0.36 -4.47 14 5 C -0.10 -2.42 7.36 -38.96 -0.29 -2.71 14 6 F -0.17 -3.87 17.28 2.25 0.04 -3.83 14 7 C 0.09 2.21 11.17 -17.39 -0.19 2.01 14 8 N -0.45 -12.41 7.85 -10.93 -0.09 -12.49 14 9 C 0.24 6.56 6.56 -84.84 -0.56 6.01 14 10 C -0.40 -10.68 8.94 -37.88 -0.34 -11.02 14 11 H 0.09 2.43 7.31 -52.48 -0.38 2.04 14 12 C 0.06 1.55 5.50 -17.32 -0.10 1.46 14 13 N -0.71 -18.49 11.46 55.55 0.64 -17.86 14 14 Si 0.91 18.24 29.56 -169.99 -5.02 13.21 14 15 H -0.26 -5.07 7.11 56.52 0.40 -4.67 14 16 H -0.27 -5.32 7.11 56.52 0.40 -4.92 14 17 H -0.27 -5.32 7.11 56.52 0.40 -4.92 14 18 H 0.04 0.65 7.69 -51.93 -0.40 0.25 14 19 H 0.09 1.14 8.14 -51.93 -0.42 0.72 14 20 H 0.04 0.65 7.69 -51.93 -0.40 0.25 14 21 H 0.11 2.31 6.44 -52.49 -0.34 1.97 14 22 H 0.13 2.93 8.06 -52.49 -0.42 2.51 14 23 H 0.28 6.43 8.29 -40.82 -0.34 6.09 14 LS Contribution 215.92 15.07 3.25 3.25 Total: -1.00 -29.11 215.92 -3.95 -33.06 By element: Atomic # 1 Polarization: 0.82 SS G_CDS: -1.50 Total: -0.68 kcal Atomic # 6 Polarization: -6.54 SS G_CDS: -1.09 Total: -7.63 kcal Atomic # 7 Polarization: -30.90 SS G_CDS: 0.55 Total: -30.35 kcal Atomic # 8 Polarization: -6.87 SS G_CDS: -0.18 Total: -7.05 kcal Atomic # 9 Polarization: -3.87 SS G_CDS: 0.04 Total: -3.83 kcal Atomic # 14 Polarization: 18.24 SS G_CDS: -5.02 Total: 13.21 kcal Total LS contribution 3.25 Total: 3.25 kcal Total: -29.11 -3.95 -33.06 kcal The number of atoms in the molecule is 23 The average number of expansion shells was 14.00 The maximum number of expansion shells was 14 The minimum number of expansion shells was 14 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000306905954.mol2 23 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -19.834 kcal (2) G-P(sol) polarization free energy of solvation -29.112 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -48.946 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -3.951 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -33.063 kcal (6) G-S(sol) free energy of system = (1) + (5) -52.897 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.14 seconds