Wall clock time and date at job start Mon Mar 30 2020 02:01:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42903 * 1 3 3 C 1.35702 * 117.00311 * 2 1 4 4 C 1.39451 * 120.29459 * 0.23236 * 3 2 1 5 5 C 1.36945 * 118.70057 * 180.26936 * 4 3 2 6 6 C 1.40736 * 119.24844 * 359.74713 * 5 4 3 7 7 C 1.41127 * 119.73359 * 180.02562 * 6 5 4 8 8 H 1.08007 * 119.99731 * 353.64370 * 7 6 5 9 9 C 1.39991 * 120.00048 * 173.64677 * 7 6 5 10 10 N 1.30784 * 120.00104 * 6.29665 * 9 7 6 11 11 Si 1.86806 * 119.99677 * 186.29256 * 9 7 6 12 12 H 1.48502 * 109.46676 * 94.98520 * 11 9 7 13 13 H 1.48500 * 109.46956 * 214.98511 * 11 9 7 14 14 H 1.48498 * 109.47168 * 334.98634 * 11 9 7 15 15 N 1.33766 * 120.53586 * 0.02562 * 6 5 4 16 16 C 1.31483 * 121.39512 * 0.02562 * 15 6 5 17 17 F 1.35102 * 119.64820 * 179.97438 * 16 15 6 18 18 H 1.08997 * 109.47284 * 179.97438 * 1 2 3 19 19 H 1.09006 * 109.46809 * 300.00024 * 1 2 3 20 20 H 1.09000 * 109.46699 * 59.99670 * 1 2 3 21 21 H 1.07997 * 120.65198 * 0.02562 * 4 3 2 22 22 H 1.07997 * 120.37929 * 179.73320 * 5 4 3 23 23 H 0.97004 * 119.99807 * 179.97438 * 10 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0452 1.2091 0.0000 4 6 1.2918 2.3825 0.0049 5 6 1.9472 3.5849 -0.0009 6 6 3.3545 3.6010 -0.0062 7 6 4.0404 4.8343 -0.0116 8 1 3.4901 5.7578 -0.1153 9 6 5.4341 4.8607 0.1173 10 7 6.1120 3.7422 0.1190 11 14 6.3256 6.4935 0.2869 12 1 6.5412 6.7926 1.7255 13 1 7.6375 6.4154 -0.4045 14 1 5.5068 7.5705 -0.3252 15 7 4.0472 2.4566 -0.0060 16 6 3.4418 1.2895 -0.0015 17 9 4.1763 0.1556 -0.0021 18 1 -0.3634 -1.0276 -0.0005 19 1 -0.3633 0.5139 0.8900 20 1 -0.3633 0.5139 -0.8900 21 1 0.2125 2.3439 0.0091 22 1 1.3906 4.5104 -0.0017 23 1 7.0778 3.7606 0.2079 RHF calculation, no. of doubly occupied orbitals= 35 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000307106738.mol2 23 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:01:06 Heat of formation + Delta-G solvation = -68.041516 kcal Electronic energy + Delta-G solvation = -12082.516236 eV Core-core repulsion = 9617.089844 eV Total energy + Delta-G solvation = -2465.426391 eV No. of doubly occupied orbitals = 35 Molecular weight (most abundant/longest-lived isotopes) = 197.059 amu Computer time = 0.14 seconds Orbital eigenvalues (eV) -49.56577 -40.65214 -38.68528 -35.35559 -32.52899 -31.40125 -28.75356 -26.70913 -23.80483 -23.21604 -19.78375 -18.69596 -18.32738 -17.33485 -16.98224 -16.62084 -15.89063 -15.40880 -15.14437 -14.45548 -13.82844 -13.72100 -13.69117 -12.86663 -12.74911 -12.59222 -12.11721 -12.10478 -11.84732 -11.05550 -10.28925 -9.94384 -9.16162 -8.40906 -6.52444 0.59042 0.86724 1.43130 1.52580 1.59330 2.22059 2.63150 2.69677 3.28156 3.65488 4.06159 4.28446 4.49334 4.52184 4.65466 4.74896 5.10916 5.21869 5.37559 5.44341 5.73687 6.07592 6.50360 6.68476 6.86960 7.77297 8.38127 Molecular weight = 197.06amu Principal moments of inertia in cm(-1) A = 0.066093 B = 0.010668 C = 0.009240 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 423.542179 B = 2623.983609 C = 3029.673069 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.025 3.975 2 O -0.344 6.344 3 C -0.096 4.096 4 C -0.100 4.100 5 C -0.244 4.244 6 C 0.222 3.778 7 C -0.452 4.452 8 H 0.110 0.890 9 C 0.016 3.984 10 N -0.761 5.761 11 Si 0.997 3.003 12 H -0.264 1.264 13 H -0.272 1.272 14 H -0.245 1.245 15 N -0.526 5.526 16 C 0.269 3.731 17 F -0.144 7.144 18 H 0.117 0.883 19 H 0.057 0.943 20 H 0.057 0.943 21 H 0.160 0.840 22 H 0.141 0.859 23 H 0.281 0.719 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.098 1.184 0.220 7.200 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.070 4.070 2 O -0.259 6.259 3 C -0.146 4.146 4 C -0.124 4.124 5 C -0.267 4.267 6 C 0.096 3.904 7 C -0.483 4.483 8 H 0.127 0.873 9 C -0.205 4.205 10 N -0.384 5.384 11 Si 0.816 3.184 12 H -0.189 1.189 13 H -0.197 1.197 14 H -0.168 1.168 15 N -0.247 5.247 16 C 0.110 3.890 17 F -0.124 7.124 18 H 0.135 0.865 19 H 0.076 0.924 20 H 0.076 0.924 21 H 0.178 0.822 22 H 0.159 0.841 23 H 0.092 0.908 Dipole moment (debyes) X Y Z Total from point charges -5.903 0.874 0.219 5.972 hybrid contribution -0.263 0.074 0.078 0.284 sum -6.166 0.948 0.296 6.246 Atomic orbital electron populations 1.23178 0.77416 1.04822 1.01537 1.85889 1.22715 1.25982 1.91337 1.19388 0.90423 0.86620 1.18180 1.21084 1.00307 0.90444 1.00534 1.21745 0.94353 0.98375 1.12222 1.18801 0.89971 0.90543 0.91047 1.20063 0.92838 0.92737 1.42697 0.87256 1.27204 0.98807 1.02032 0.92499 1.70271 1.08677 1.30368 1.29058 0.84979 0.77545 0.76559 0.79327 1.18874 1.19728 1.16822 1.68204 1.38477 0.96117 1.21897 1.18452 0.84281 0.83287 1.03003 1.91419 1.78845 1.47924 1.94205 0.86527 0.92447 0.92449 0.82237 0.84147 0.90829 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.69 9.82 113.37 1.11 1.80 14 2 O -0.34 -14.31 10.36 -90.22 -0.93 -15.24 14 3 C -0.10 -4.57 6.75 22.96 0.15 -4.41 14 4 C -0.10 -4.13 9.06 22.26 0.20 -3.93 14 5 C -0.24 -11.11 9.77 22.58 0.22 -10.89 14 6 C 0.22 12.10 6.54 40.17 0.26 12.36 14 7 C -0.45 -23.50 9.12 23.40 0.21 -23.29 14 8 H 0.11 5.04 7.85 -2.91 -0.02 5.02 14 9 C 0.02 0.81 5.49 85.27 0.47 1.28 14 10 N -0.76 -42.20 11.48 21.83 0.25 -41.95 14 11 Si 1.00 36.99 29.56 68.60 2.03 39.02 14 12 H -0.26 -9.52 7.11 99.48 0.71 -8.81 14 13 H -0.27 -9.88 7.11 99.48 0.71 -9.17 14 14 H -0.25 -8.41 7.11 99.48 0.71 -7.71 14 15 N -0.53 -31.17 7.89 -189.63 -1.50 -32.67 14 16 C 0.27 14.88 8.44 85.15 0.72 15.60 14 17 F -0.14 -7.95 17.14 44.97 0.77 -7.18 14 18 H 0.12 2.42 8.14 -2.39 -0.02 2.40 14 19 H 0.06 1.41 7.67 -2.38 -0.02 1.39 14 20 H 0.06 1.41 7.69 -2.39 -0.02 1.39 14 21 H 0.16 5.02 6.41 -2.91 -0.02 5.00 14 22 H 0.14 5.42 8.06 -2.91 -0.02 5.40 14 23 H 0.28 14.11 8.30 -92.71 -0.77 13.34 14 Total: -1.00 -66.44 216.88 5.20 -61.23 By element: Atomic # 1 Polarization: 7.02 SS G_CDS: 1.23 Total: 8.25 kcal Atomic # 6 Polarization: -14.82 SS G_CDS: 3.35 Total: -11.47 kcal Atomic # 7 Polarization: -73.37 SS G_CDS: -1.25 Total: -74.62 kcal Atomic # 8 Polarization: -14.31 SS G_CDS: -0.93 Total: -15.24 kcal Atomic # 9 Polarization: -7.95 SS G_CDS: 0.77 Total: -7.18 kcal Atomic # 14 Polarization: 36.99 SS G_CDS: 2.03 Total: 39.02 kcal Total: -66.44 5.20 -61.23 kcal The number of atoms in the molecule is 23 The average number of expansion shells was 14.00 The maximum number of expansion shells was 14 The minimum number of expansion shells was 14 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000307106738.mol2 23 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -6.808 kcal (2) G-P(sol) polarization free energy of solvation -66.437 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -73.245 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.203 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.234 kcal (6) G-S(sol) free energy of system = (1) + (5) -68.042 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.14 seconds