Wall clock time and date at job start Mon Mar 30 2020 02:01:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42899 * 1 3 3 C 1.35610 * 116.99880 * 2 1 4 4 C 1.39047 * 120.55171 * 359.97438 * 3 2 1 5 5 C 1.38506 * 118.56518 * 179.97438 * 4 3 2 6 6 C 1.39314 * 119.63276 * 0.02562 * 5 4 3 7 7 F 1.35098 * 119.43880 * 179.97438 * 6 5 4 8 8 N 1.31504 * 121.12720 * 359.97438 * 6 5 4 9 9 C 1.33770 * 121.53266 * 359.97438 * 8 6 5 10 10 C 1.40990 * 119.87362 * 179.97438 * 9 8 6 11 11 H 1.07994 * 119.99879 * 180.02562 * 10 9 8 12 12 C 1.40047 * 119.99919 * 359.97438 * 10 9 8 13 13 N 1.30765 * 120.00444 * 0.02562 * 12 10 9 14 14 Si 1.86802 * 119.99931 * 180.02562 * 12 10 9 15 15 H 1.48500 * 109.46962 * 90.00206 * 14 12 10 16 16 H 1.48501 * 109.47366 * 210.00143 * 14 12 10 17 17 H 1.48498 * 109.47325 * 330.00509 * 14 12 10 18 18 H 1.08997 * 109.47486 * 299.99800 * 1 2 3 19 19 H 1.09006 * 109.47143 * 60.00199 * 1 2 3 20 20 H 1.09001 * 109.46887 * 179.97438 * 1 2 3 21 21 H 1.07999 * 120.72009 * 359.97438 * 4 3 2 22 22 H 1.07992 * 120.17929 * 180.02562 * 5 4 3 23 23 H 0.97003 * 120.00207 * 179.97438 * 13 12 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0446 1.2083 0.0000 4 6 1.2986 2.3817 -0.0005 5 6 1.9697 3.5932 0.0000 6 6 3.3628 3.6090 0.0006 7 9 4.0135 4.7930 0.0006 8 7 4.0553 2.4910 0.0011 9 6 3.4544 1.2959 0.0016 10 6 4.2312 0.1193 0.0015 11 1 3.7482 -0.8466 0.0015 12 6 5.6291 0.2032 0.0004 13 7 6.2140 1.3727 -0.0001 14 14 6.6584 -1.3557 -0.0003 15 1 6.9300 -1.7688 -1.4006 16 1 7.9435 -1.1008 0.6987 17 1 5.9198 -2.4369 0.7002 18 1 -0.3634 0.5138 0.8900 19 1 -0.3634 0.5138 -0.8900 20 1 -0.3633 -1.0277 -0.0005 21 1 0.2191 2.3491 -0.0014 22 1 1.4162 4.5205 0.0001 23 1 7.1823 1.4308 -0.0005 RHF calculation, no. of doubly occupied orbitals= 35 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000307128888.mol2 23 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:01:02 Heat of formation + Delta-G solvation = -48.143070 kcal Electronic energy + Delta-G solvation = -12152.021642 eV Core-core repulsion = 9687.458112 eV Total energy + Delta-G solvation = -2464.563530 eV No. of doubly occupied orbitals = 35 Molecular weight (most abundant/longest-lived isotopes) = 197.059 amu Computer time = 0.13 seconds Orbital eigenvalues (eV) -47.57699 -38.89083 -36.55073 -33.69789 -30.59304 -29.39101 -26.62709 -25.58438 -21.78377 -21.24510 -17.80903 -16.82430 -16.56543 -15.40894 -14.90930 -14.84633 -14.40936 -13.66974 -13.20558 -12.71086 -12.31057 -11.86232 -11.68870 -11.34786 -11.21758 -10.75629 -10.58111 -10.24547 -10.02766 -9.43673 -8.33443 -7.95494 -7.18264 -6.54785 -4.56552 2.54252 2.75455 3.06381 3.09570 3.12812 3.89050 4.33224 4.58549 5.26722 5.58321 5.66216 5.75171 5.84344 5.96286 6.15091 6.53052 6.75237 7.04704 7.20053 7.36553 7.86630 8.07987 8.14409 8.55958 8.85338 9.73988 10.17506 Molecular weight = 197.06amu Principal moments of inertia in cm(-1) A = 0.029826 B = 0.016054 C = 0.010496 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 938.554109 B = 1743.645116 C = 2667.055519 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.033 3.967 2 O -0.308 6.308 3 C -0.040 4.040 4 C -0.126 4.126 5 C -0.320 4.320 6 C 0.301 3.699 7 F -0.144 7.144 8 N -0.498 5.498 9 C 0.272 3.728 10 C -0.400 4.400 11 H 0.098 0.902 12 C 0.061 3.939 13 N -0.705 5.705 14 Si 0.915 3.085 15 H -0.267 1.267 16 H -0.275 1.275 17 H -0.259 1.259 18 H 0.041 0.959 19 H 0.041 0.959 20 H 0.084 0.916 21 H 0.111 0.889 22 H 0.106 0.894 23 H 0.277 0.723 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.830 -2.429 0.001 5.406 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.064 4.064 2 O -0.221 6.221 3 C -0.088 4.088 4 C -0.150 4.150 5 C -0.345 4.345 6 C 0.141 3.859 7 F -0.123 7.123 8 N -0.219 5.219 9 C 0.146 3.854 10 C -0.431 4.431 11 H 0.116 0.884 12 C -0.166 4.166 13 N -0.326 5.326 14 Si 0.739 3.261 15 H -0.192 1.192 16 H -0.200 1.200 17 H -0.182 1.182 18 H 0.059 0.941 19 H 0.059 0.941 20 H 0.103 0.897 21 H 0.129 0.871 22 H 0.125 0.875 23 H 0.089 0.911 Dipole moment (debyes) X Y Z Total from point charges -3.620 -2.439 0.005 4.366 hybrid contribution -0.659 -0.059 -0.009 0.662 sum -4.279 -2.498 -0.004 4.955 Atomic orbital electron populations 1.22780 0.81494 1.02043 1.00034 1.85943 1.18459 1.27418 1.90259 1.20149 0.93443 0.83450 1.11764 1.20744 0.97999 0.91802 1.04418 1.20644 0.92534 0.97665 1.23631 1.18489 0.86832 0.81871 0.98678 1.91435 1.83167 1.43749 1.93987 1.68267 1.36223 0.95560 1.21884 1.17754 0.85208 0.90596 0.91820 1.19673 0.90663 0.93062 1.39688 0.88394 1.26202 0.98877 0.97654 0.93829 1.70151 1.11023 1.24774 1.26604 0.86190 0.78997 0.81526 0.79408 1.19208 1.19994 1.18240 0.94077 0.94085 0.89719 0.87081 0.87544 0.91141 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.53 9.83 101.05 0.99 1.52 14 2 O -0.31 -6.85 9.62 -18.53 -0.18 -7.03 14 3 C -0.04 -0.99 6.73 -38.14 -0.26 -1.25 14 4 C -0.13 -2.84 9.13 -39.18 -0.36 -3.19 14 5 C -0.32 -7.52 10.09 -39.08 -0.39 -7.92 14 6 C 0.30 7.96 8.41 -17.29 -0.15 7.81 14 7 F -0.14 -3.64 17.29 2.25 0.04 -3.60 14 8 N -0.50 -14.38 7.87 -11.34 -0.09 -14.47 14 9 C 0.27 7.59 6.56 -84.84 -0.56 7.04 14 10 C -0.40 -10.75 8.94 -37.86 -0.34 -11.09 14 11 H 0.10 2.50 7.31 -52.49 -0.38 2.12 14 12 C 0.06 1.55 5.50 -17.33 -0.10 1.45 14 13 N -0.70 -18.96 11.46 55.55 0.64 -18.32 14 14 Si 0.92 18.44 29.56 -169.99 -5.02 13.41 14 15 H -0.27 -5.29 7.11 56.52 0.40 -4.89 14 16 H -0.28 -5.40 7.11 56.52 0.40 -5.00 14 17 H -0.26 -5.10 7.11 56.52 0.40 -4.70 14 18 H 0.04 0.61 7.70 -51.93 -0.40 0.21 14 19 H 0.04 0.61 7.69 -51.93 -0.40 0.21 14 20 H 0.08 1.10 8.14 -51.93 -0.42 0.67 14 21 H 0.11 2.09 6.44 -52.49 -0.34 1.75 14 22 H 0.11 2.20 8.06 -52.49 -0.42 1.78 14 23 H 0.28 6.71 8.29 -40.82 -0.34 6.37 14 LS Contribution 215.93 15.07 3.25 3.25 Total: -1.00 -29.83 215.93 -4.01 -33.84 By element: Atomic # 1 Polarization: 0.02 SS G_CDS: -1.50 Total: -1.48 kcal Atomic # 6 Polarization: -4.47 SS G_CDS: -1.15 Total: -5.62 kcal Atomic # 7 Polarization: -33.34 SS G_CDS: 0.55 Total: -32.79 kcal Atomic # 8 Polarization: -6.85 SS G_CDS: -0.18 Total: -7.03 kcal Atomic # 9 Polarization: -3.64 SS G_CDS: 0.04 Total: -3.60 kcal Atomic # 14 Polarization: 18.44 SS G_CDS: -5.02 Total: 13.41 kcal Total LS contribution 3.25 Total: 3.25 kcal Total: -29.83 -4.01 -33.84 kcal The number of atoms in the molecule is 23 The average number of expansion shells was 14.00 The maximum number of expansion shells was 14 The minimum number of expansion shells was 14 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000307128888.mol2 23 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -14.299 kcal (2) G-P(sol) polarization free energy of solvation -29.829 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -44.128 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.015 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -33.844 kcal (6) G-S(sol) free energy of system = (1) + (5) -48.143 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.13 seconds