Wall clock time and date at job start Mon Mar 30 2020 02:16:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86798 * 120.00170 * 2 1 4 4 H 1.48499 * 109.47121 * 180.02562 * 3 2 1 5 5 H 1.48493 * 109.47182 * 300.00493 * 3 2 1 6 6 H 1.48509 * 109.46979 * 60.00403 * 3 2 1 7 7 C 1.37877 * 119.99817 * 180.02562 * 2 1 3 8 8 H 1.08000 * 119.99987 * 180.02562 * 7 2 1 9 9 C 1.50705 * 120.00096 * 359.97438 * 7 2 1 10 10 H 1.08997 * 110.69666 * 56.68231 * 9 7 2 11 11 C 1.53452 * 110.95245 * 293.24898 * 9 7 2 12 12 O 1.20828 * 125.82581 * 66.01793 * 11 9 7 13 13 O 1.38381 * 108.26537 * 245.64644 * 11 9 7 14 14 C 1.41939 * 104.15254 * 29.17151 * 13 11 9 15 15 H 1.09002 * 109.04380 * 64.42757 * 14 13 11 16 16 C 1.50270 * 127.69348 * 199.08817 * 14 13 11 17 17 C 1.55977 * 102.88192 * 145.19856 * 16 14 13 18 18 N 1.50134 * 106.16485 * 354.26490 * 17 16 14 19 19 C 1.44846 * 103.04152 * 332.51138 * 18 17 16 20 20 H 1.08997 * 111.18487 * 290.83848 * 19 18 17 21 21 H 0.96995 * 119.99960 * 359.97438 * 1 2 3 22 22 H 1.08996 * 110.73302 * 263.54756 * 16 14 13 23 23 H 1.09000 * 110.73684 * 26.85178 * 16 14 13 24 24 H 1.08998 * 110.11357 * 235.08549 * 17 16 14 25 25 H 1.08999 * 110.11243 * 113.43410 * 17 16 14 26 26 H 1.00902 * 111.00691 * 91.39179 * 18 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.7092 1.3463 -0.0006 5 1 1.8904 2.3964 -1.2124 6 1 1.8905 2.3964 1.2126 7 6 2.0045 -1.1941 -0.0005 8 1 3.0845 -1.1941 -0.0001 9 6 1.2510 -2.4992 -0.0005 10 1 0.5730 -2.5526 -0.8523 11 6 0.4872 -2.6919 1.3164 12 8 -0.4398 -2.0193 1.7013 13 8 1.0373 -3.7729 1.9826 14 6 2.3936 -3.7847 1.5645 15 1 2.8828 -2.8771 1.9182 16 6 3.3676 -4.9267 1.6372 17 6 4.2295 -4.7310 0.3520 18 7 3.5962 -3.6017 -0.4081 19 6 2.2078 -3.6719 -0.0011 20 1 1.7244 -4.5628 -0.4019 21 1 -0.4850 0.8400 0.0004 22 1 3.9857 -4.8503 2.5316 23 1 2.8444 -5.8825 1.6090 24 1 4.2182 -5.6403 -0.2490 25 1 5.2532 -4.4728 0.6229 26 1 4.0049 -2.7166 -0.1481 RHF calculation, no. of doubly occupied orbitals= 36 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000307427140.mol2 26 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:16:03 Heat of formation + Delta-G solvation = -71.989632 kcal Electronic energy + Delta-G solvation = -13017.804211 eV Core-core repulsion = 10675.666922 eV Total energy + Delta-G solvation = -2342.137289 eV No. of doubly occupied orbitals = 36 Molecular weight (most abundant/longest-lived isotopes) = 197.084 amu Computer time = 0.14 seconds Orbital eigenvalues (eV) -42.33082 -39.08695 -37.21505 -35.20295 -32.36727 -30.18686 -27.53050 -26.11038 -22.41859 -22.01851 -21.47907 -19.25290 -17.88910 -17.14637 -16.85202 -16.65992 -15.93714 -15.48545 -14.89477 -14.57981 -14.04764 -13.69085 -13.39967 -12.94917 -12.85747 -12.47776 -12.30725 -12.03773 -11.70672 -11.27224 -11.08341 -10.84175 -10.58202 -9.41224 -8.23100 -6.41835 1.27488 1.41269 1.44038 1.54195 2.24884 2.36898 2.82410 3.18576 3.79916 3.88689 3.90440 4.05407 4.39400 4.44039 4.53724 4.73587 4.96356 5.11715 5.14837 5.23368 5.59421 5.66403 5.80474 6.04445 6.46476 6.66018 6.86048 7.27786 8.82476 Molecular weight = 197.08amu Principal moments of inertia in cm(-1) A = 0.040223 B = 0.015269 C = 0.012229 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 695.955832 B = 1833.392344 C = 2289.049253 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.888 5.888 2 C 0.010 3.990 3 Si 0.967 3.033 4 H -0.249 1.249 5 H -0.278 1.278 6 H -0.290 1.290 7 C -0.537 4.537 8 H 0.088 0.912 9 C 0.012 3.988 10 H 0.045 0.955 11 C 0.470 3.530 12 O -0.467 6.467 13 O -0.373 6.373 14 C 0.012 3.988 15 H 0.059 0.941 16 C -0.121 4.121 17 C 0.047 3.953 18 N -0.651 5.651 19 C 0.053 3.947 20 H 0.096 0.904 21 H 0.263 0.737 22 H 0.099 0.901 23 H 0.090 0.910 24 H 0.100 0.900 25 H 0.099 0.901 26 H 0.344 0.656 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.136 -7.624 0.885 12.714 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.523 5.523 2 C -0.194 4.194 3 Si 0.791 3.209 4 H -0.172 1.172 5 H -0.203 1.203 6 H -0.216 1.216 7 C -0.575 4.575 8 H 0.105 0.895 9 C -0.008 4.008 10 H 0.063 0.937 11 C 0.311 3.689 12 O -0.347 6.347 13 O -0.293 6.293 14 C -0.047 4.047 15 H 0.077 0.923 16 C -0.159 4.159 17 C -0.081 4.081 18 N -0.280 5.280 19 C -0.060 4.060 20 H 0.114 0.886 21 H 0.072 0.928 22 H 0.118 0.882 23 H 0.108 0.892 24 H 0.119 0.881 25 H 0.118 0.882 26 H 0.163 0.837 Dipole moment (debyes) X Y Z Total from point charges 9.370 -7.641 0.520 12.101 hybrid contribution -0.445 1.501 1.083 1.904 sum 8.925 -6.140 1.603 10.951 Atomic orbital electron populations 1.70235 1.07732 1.27798 1.46551 1.26083 0.95692 1.03733 0.93898 0.85360 0.79711 0.78510 0.77298 1.17203 1.20311 1.21643 1.21000 0.93630 0.88718 1.54103 0.89457 1.19500 0.94505 0.96202 0.90632 0.93746 1.26796 0.80475 0.74511 0.87129 1.90544 1.28433 1.42368 1.73332 1.87366 1.24794 1.48056 1.69100 1.24117 0.81723 1.01580 0.97261 0.92268 1.22241 0.95575 0.96780 1.01343 1.23817 0.98162 0.95601 0.90561 1.62601 1.00998 1.08539 1.55860 1.22991 0.92190 0.97915 0.92865 0.88616 0.92810 0.88201 0.89153 0.88137 0.88212 0.83726 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -53.29 11.53 21.45 0.25 -53.04 15 2 C 0.01 0.53 5.36 84.65 0.45 0.98 15 3 Si 0.97 42.46 29.54 68.60 2.03 44.48 15 4 H -0.25 -9.96 7.11 99.48 0.71 -9.26 15 5 H -0.28 -11.98 7.11 99.48 0.71 -11.27 15 6 H -0.29 -12.98 7.11 99.48 0.71 -12.28 15 7 C -0.54 -27.77 7.92 25.60 0.20 -27.57 15 8 H 0.09 4.11 5.87 -2.91 -0.02 4.09 15 9 C 0.01 0.59 2.78 -11.93 -0.03 0.56 15 10 H 0.04 2.44 8.14 -2.39 -0.02 2.42 15 11 C 0.47 25.10 7.74 72.13 0.56 25.66 15 12 O -0.47 -28.63 16.32 21.30 0.35 -28.29 15 13 O -0.37 -17.08 11.29 -99.47 -1.12 -18.20 15 14 C 0.01 0.44 3.65 31.51 0.11 0.56 15 15 H 0.06 2.33 7.56 -2.39 -0.02 2.31 15 16 C -0.12 -2.93 6.83 30.74 0.21 -2.72 15 17 C 0.05 1.03 7.60 86.70 0.66 1.69 15 18 N -0.65 -20.73 7.46 -476.17 -3.55 -24.29 15 19 C 0.05 2.02 3.55 46.56 0.17 2.18 15 20 H 0.10 3.50 8.14 -2.39 -0.02 3.48 15 21 H 0.26 15.10 8.31 -92.71 -0.77 14.33 15 22 H 0.10 1.97 8.14 -2.39 -0.02 1.95 15 23 H 0.09 2.01 8.14 -2.39 -0.02 1.99 15 24 H 0.10 1.88 8.14 -2.39 -0.02 1.86 15 25 H 0.10 1.67 8.14 -2.39 -0.02 1.65 15 26 H 0.34 11.37 6.67 -89.69 -0.60 10.77 15 Total: -1.00 -66.81 220.17 0.87 -65.94 By element: Atomic # 1 Polarization: 11.44 SS G_CDS: 0.60 Total: 12.04 kcal Atomic # 6 Polarization: -0.98 SS G_CDS: 2.33 Total: 1.35 kcal Atomic # 7 Polarization: -74.02 SS G_CDS: -3.31 Total: -77.33 kcal Atomic # 8 Polarization: -45.71 SS G_CDS: -0.78 Total: -46.49 kcal Atomic # 14 Polarization: 42.46 SS G_CDS: 2.03 Total: 44.48 kcal Total: -66.81 0.87 -65.94 kcal The number of atoms in the molecule is 26 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000307427140.mol2 26 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -6.051 kcal (2) G-P(sol) polarization free energy of solvation -66.814 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -72.864 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.875 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.939 kcal (6) G-S(sol) free energy of system = (1) + (5) -71.990 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.14 seconds