Wall clock time and date at job start Mon Mar 30 2020 02:01:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42900 * 1 3 3 C 1.35664 * 116.99747 * 2 1 4 4 C 1.38477 * 120.63555 * 0.02562 * 3 2 1 5 5 N 1.31860 * 120.96786 * 180.02562 * 4 3 2 6 6 C 1.32065 * 122.45104 * 0.02562 * 5 4 3 7 7 C 1.37871 * 121.14565 * 359.97031 * 6 5 4 8 8 F 1.35098 * 120.57074 * 180.02562 * 7 6 5 9 9 C 1.41351 * 118.86851 * 0.02718 * 7 6 5 10 10 C 1.41127 * 121.08180 * 179.97438 * 9 7 6 11 11 H 1.08007 * 119.99608 * 144.90492 * 10 9 7 12 12 C 1.40045 * 120.00191 * 324.91099 * 10 9 7 13 13 N 1.30782 * 120.00001 * 339.58557 * 12 10 9 14 14 Si 1.86796 * 120.00148 * 159.59049 * 12 10 9 15 15 H 1.48495 * 109.47457 * 94.98335 * 14 12 10 16 16 H 1.48500 * 109.47012 * 214.98500 * 14 12 10 17 17 H 1.48502 * 109.47012 * 334.98425 * 14 12 10 18 18 H 1.09004 * 109.46738 * 179.97438 * 1 2 3 19 19 H 1.08998 * 109.46906 * 299.99547 * 1 2 3 20 20 H 1.08997 * 109.47403 * 59.99833 * 1 2 3 21 21 H 1.07994 * 119.51906 * 0.04493 * 4 3 2 22 22 H 1.08001 * 119.43021 * 179.97438 * 6 5 4 23 23 H 0.96999 * 119.99906 * 180.02562 * 13 12 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0448 1.2088 0.0000 4 6 1.3035 2.3784 0.0005 5 7 1.8953 3.5568 0.0000 6 6 3.2092 3.6899 -0.0015 7 6 4.0376 2.5878 -0.0020 8 9 5.3803 2.7375 -0.0031 9 6 3.4582 1.2986 -0.0015 10 6 4.2620 0.1385 -0.0026 11 1 3.9410 -0.7413 0.5355 12 6 5.4757 0.1282 -0.7012 13 7 5.6885 0.9971 -1.6552 14 14 6.7907 -1.1266 -0.2704 15 1 6.6691 -2.3004 -1.1717 16 1 8.1330 -0.5131 -0.4349 17 1 6.6154 -1.5637 1.1380 18 1 -0.3633 -1.0277 -0.0005 19 1 -0.3633 0.5138 0.8900 20 1 -0.3634 0.5138 -0.8899 21 1 0.2249 2.3248 0.0017 22 1 3.6423 4.6793 -0.0023 23 1 6.5290 0.9897 -2.1393 RHF calculation, no. of doubly occupied orbitals= 35 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000307522032.mol2 23 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:01:20 Heat of formation + Delta-G solvation = -74.494362 kcal Electronic energy + Delta-G solvation = -12354.347586 eV Core-core repulsion = 9888.641378 eV Total energy + Delta-G solvation = -2465.706208 eV No. of doubly occupied orbitals = 35 Molecular weight (most abundant/longest-lived isotopes) = 197.059 amu Computer time = 0.15 seconds Orbital eigenvalues (eV) -49.07107 -40.78988 -38.37873 -35.93139 -32.62948 -30.65937 -28.20495 -27.70418 -23.64116 -23.22723 -19.72634 -18.69986 -18.11214 -17.16213 -16.58790 -16.40029 -16.28368 -15.74823 -15.13713 -14.41372 -14.06160 -13.76178 -13.45484 -13.26497 -12.78054 -12.56058 -12.26912 -12.03214 -12.01327 -11.14852 -10.14949 -9.65376 -9.13241 -8.80887 -6.54900 0.56915 0.72597 1.36117 1.45645 1.52902 2.17623 2.63856 2.68199 3.34590 3.81605 4.05061 4.24360 4.40202 4.50297 4.54897 4.76701 4.94605 5.11366 5.15265 5.37813 5.97235 6.21132 6.44307 6.65715 6.90110 7.38998 8.20850 Molecular weight = 197.06amu Principal moments of inertia in cm(-1) A = 0.037184 B = 0.015947 C = 0.011746 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 752.833562 B = 1755.447547 C = 2383.129315 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.021 3.979 2 O -0.329 6.329 3 C -0.008 4.008 4 C 0.008 3.992 5 N -0.525 5.525 6 C 0.046 3.954 7 C -0.026 4.026 8 F -0.142 7.142 9 C 0.051 3.949 10 C -0.474 4.474 11 H 0.086 0.914 12 C 0.035 3.965 13 N -0.805 5.805 14 Si 0.986 3.014 15 H -0.257 1.257 16 H -0.265 1.265 17 H -0.257 1.257 18 H 0.118 0.882 19 H 0.060 0.940 20 H 0.056 0.944 21 H 0.169 0.831 22 H 0.159 0.841 23 H 0.294 0.706 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.574 -2.337 1.815 4.639 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.074 4.074 2 O -0.242 6.242 3 C -0.056 4.056 4 C -0.145 4.145 5 N -0.240 5.240 6 C -0.111 4.111 7 C -0.051 4.051 8 F -0.121 7.121 9 C 0.042 3.958 10 C -0.504 4.504 11 H 0.104 0.896 12 C -0.183 4.183 13 N -0.429 5.429 14 Si 0.806 3.194 15 H -0.182 1.182 16 H -0.190 1.190 17 H -0.180 1.180 18 H 0.136 0.864 19 H 0.079 0.921 20 H 0.074 0.926 21 H 0.186 0.814 22 H 0.176 0.824 23 H 0.105 0.895 Dipole moment (debyes) X Y Z Total from point charges -3.860 -1.703 1.628 4.522 hybrid contribution 1.134 -0.901 -0.104 1.452 sum -2.726 -2.604 1.524 4.066 Atomic orbital electron populations 1.23238 0.77548 1.04993 1.01617 1.85922 1.22264 1.26399 1.89631 1.20140 0.91821 0.85661 1.08023 1.22670 1.00234 0.86949 1.04677 1.67355 1.10286 1.26333 1.19983 1.22321 0.89383 0.97444 1.01947 1.18760 0.77659 0.94331 1.14314 1.91290 1.30412 1.96146 1.94288 1.17714 0.90300 0.93574 0.94166 1.19477 1.03437 0.99088 1.28444 0.89619 1.26793 1.00493 0.98645 0.92373 1.69776 1.25724 1.32977 1.14453 0.85118 0.76388 0.77717 0.80174 1.18157 1.18968 1.18013 0.86423 0.92095 0.92567 0.81359 0.82386 0.89545 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.60 9.82 113.37 1.11 1.71 14 2 O -0.33 -14.46 10.02 -89.80 -0.90 -15.36 14 3 C -0.01 -0.40 6.75 23.16 0.16 -0.24 14 4 C 0.01 0.33 10.21 84.75 0.87 1.20 14 5 N -0.53 -24.54 10.32 -195.77 -2.02 -26.56 14 6 C 0.05 2.20 11.14 84.57 0.94 3.14 14 7 C -0.03 -1.42 6.74 22.95 0.15 -1.26 14 8 F -0.14 -7.83 14.33 44.97 0.64 -7.19 14 9 C 0.05 2.85 5.45 -20.97 -0.11 2.73 14 10 C -0.47 -26.22 8.61 23.42 0.20 -26.02 14 11 H 0.09 4.63 7.91 -2.91 -0.02 4.61 14 12 C 0.04 1.83 4.57 85.29 0.39 2.22 14 13 N -0.80 -43.42 11.07 21.84 0.24 -43.18 14 14 Si 0.99 39.10 29.61 68.60 2.03 41.14 14 15 H -0.26 -9.60 7.11 99.48 0.71 -8.89 14 16 H -0.27 -10.06 7.11 99.48 0.71 -9.35 14 17 H -0.26 -9.97 7.11 99.48 0.71 -9.26 14 18 H 0.12 2.67 8.14 -2.38 -0.02 2.65 14 19 H 0.06 1.57 7.68 -2.39 -0.02 1.55 14 20 H 0.06 1.51 7.68 -2.39 -0.02 1.49 14 21 H 0.17 5.98 6.32 -2.91 -0.02 5.96 14 22 H 0.16 6.60 8.06 -2.91 -0.02 6.58 14 23 H 0.29 14.32 8.29 -92.71 -0.77 13.55 14 Total: -1.00 -63.72 214.05 4.94 -58.79 By element: Atomic # 1 Polarization: 7.65 SS G_CDS: 1.23 Total: 8.88 kcal Atomic # 6 Polarization: -20.23 SS G_CDS: 3.71 Total: -16.52 kcal Atomic # 7 Polarization: -67.96 SS G_CDS: -1.78 Total: -69.74 kcal Atomic # 8 Polarization: -14.46 SS G_CDS: -0.90 Total: -15.36 kcal Atomic # 9 Polarization: -7.83 SS G_CDS: 0.64 Total: -7.19 kcal Atomic # 14 Polarization: 39.10 SS G_CDS: 2.03 Total: 41.14 kcal Total: -63.72 4.94 -58.79 kcal The number of atoms in the molecule is 23 The average number of expansion shells was 14.00 The maximum number of expansion shells was 14 The minimum number of expansion shells was 14 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000307522032.mol2 23 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -15.706 kcal (2) G-P(sol) polarization free energy of solvation -63.725 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -79.431 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.937 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -58.788 kcal (6) G-S(sol) free energy of system = (1) + (5) -74.494 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.15 seconds