Wall clock time and date at job start Mon Mar 30 2020 02:17:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31414 * 1 3 3 Si 1.86798 * 119.99943 * 2 1 4 4 H 1.48496 * 109.47524 * 269.99788 * 3 2 1 5 5 H 1.48501 * 109.46961 * 149.99877 * 3 2 1 6 6 H 1.48503 * 109.46991 * 30.00341 * 3 2 1 7 7 C 1.38955 * 120.00027 * 179.97438 * 2 1 3 8 8 H 1.08000 * 119.99625 * 180.02562 * 7 2 1 9 9 N 1.37102 * 119.99769 * 0.02562 * 7 2 1 10 10 C 1.34771 * 119.99482 * 180.02562 * 9 7 2 11 11 O 1.21292 * 120.00442 * 359.97438 * 10 9 7 12 12 C 1.50703 * 119.99771 * 180.02562 * 10 9 7 13 13 H 1.09000 * 115.52433 * 62.69843 * 12 10 9 14 14 C 1.52902 * 117.45049 * 277.24535 * 12 10 9 15 15 H 1.09004 * 119.74671 * 139.17105 * 14 12 10 16 16 C 1.54750 * 118.19249 * 342.88421 * 14 12 10 17 17 C 1.54994 * 102.12673 * 275.88668 * 16 14 12 18 18 O 1.44381 * 103.49859 * 37.10307 * 17 16 14 19 19 C 1.43785 * 106.89547 * 320.06212 * 18 17 16 20 20 H 1.09001 * 117.77359 * 245.48399 * 19 18 17 21 21 H 0.97006 * 119.99663 * 179.97438 * 1 2 3 22 22 H 0.96997 * 120.00225 * 0.02562 * 9 7 2 23 23 H 1.09007 * 110.86737 * 34.04204 * 16 14 12 24 24 H 1.08996 * 110.87412 * 157.72390 * 16 14 12 25 25 H 1.09002 * 110.61985 * 155.60884 * 17 16 14 26 26 H 1.09006 * 110.61272 * 278.60685 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3141 0.0000 0.0000 3 14 2.2481 1.6177 0.0000 4 1 2.4957 2.0465 -1.4000 5 1 3.5457 1.4401 0.7001 6 1 1.4456 2.6526 0.7001 7 6 2.0089 -1.2034 0.0005 8 1 3.0889 -1.2033 0.0010 9 7 1.3234 -2.3907 0.0005 10 6 1.9973 -3.5578 0.0016 11 8 3.2102 -3.5578 0.0021 12 6 1.2438 -4.8629 0.0010 13 1 0.6193 -5.0443 -0.8737 14 6 0.7416 -5.3875 1.3466 15 1 -0.2488 -5.8374 1.4161 16 6 1.3583 -4.7976 2.6375 17 6 2.6424 -5.6496 2.8037 18 8 3.0971 -5.8420 1.4469 19 6 1.9276 -6.0729 0.6430 20 1 1.8151 -7.0532 0.1798 21 1 -0.4850 -0.8401 -0.0004 22 1 0.3534 -2.3907 -0.0002 23 1 1.6057 -3.7445 2.5035 24 1 0.6883 -4.9353 3.4861 25 1 3.3890 -5.1092 3.3857 26 1 2.4099 -6.6071 3.2700 RHF calculation, no. of doubly occupied orbitals= 36 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000307583409.mol2 26 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:17:24 Heat of formation + Delta-G solvation = -44.420617 kcal Electronic energy + Delta-G solvation = -12618.436029 eV Core-core repulsion = 10277.494222 eV Total energy + Delta-G solvation = -2340.941807 eV No. of doubly occupied orbitals = 36 Molecular weight (most abundant/longest-lived isotopes) = 197.084 amu Computer time = 0.14 seconds Orbital eigenvalues (eV) -40.22070 -37.52018 -34.22761 -33.45910 -30.88532 -30.23919 -25.29068 -23.41902 -22.11791 -20.75878 -18.94917 -17.81815 -16.81111 -16.10327 -14.83097 -14.65096 -14.50537 -13.74667 -13.59153 -12.87182 -12.54869 -12.29271 -11.56397 -11.18671 -10.97527 -10.89643 -10.47283 -10.19604 -9.85562 -9.76131 -9.46662 -9.09176 -8.29859 -7.97239 -6.71429 -3.83648 3.29972 3.37009 3.45263 3.56738 3.91962 4.24202 4.33659 4.67792 4.82909 5.01296 5.20631 5.30521 5.34884 5.42738 5.61818 5.84939 5.99394 6.01560 6.07719 6.24119 6.45634 7.19653 7.85716 8.13208 8.66105 8.86661 9.53972 9.97525 10.72312 Molecular weight = 197.08amu Principal moments of inertia in cm(-1) A = 0.058616 B = 0.009936 C = 0.009710 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 477.574088 B = 2817.478871 C = 2882.808166 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.903 5.903 2 C -0.010 4.010 3 Si 1.093 2.907 4 H -0.285 1.285 5 H -0.284 1.284 6 H -0.281 1.281 7 C -0.381 4.381 8 H 0.098 0.902 9 N -0.574 5.574 10 C 0.473 3.527 11 O -0.566 6.566 12 C -0.156 4.156 13 H 0.125 0.875 14 C -0.177 4.177 15 H 0.122 0.878 16 C -0.130 4.130 17 C 0.050 3.950 18 O -0.327 6.327 19 C 0.033 3.967 20 H 0.133 0.867 21 H 0.261 0.739 22 H 0.375 0.625 23 H 0.086 0.914 24 H 0.080 0.920 25 H 0.091 0.909 26 H 0.056 0.944 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.588 -9.168 3.920 10.097 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.543 5.543 2 C -0.212 4.212 3 Si 0.919 3.081 4 H -0.211 1.211 5 H -0.210 1.210 6 H -0.207 1.207 7 C -0.510 4.510 8 H 0.116 0.884 9 N -0.212 5.212 10 C 0.258 3.742 11 O -0.449 6.449 12 C -0.178 4.178 13 H 0.143 0.857 14 C -0.196 4.196 15 H 0.140 0.860 16 C -0.168 4.168 17 C -0.026 4.026 18 O -0.245 6.245 19 C -0.026 4.026 20 H 0.150 0.850 21 H 0.073 0.927 22 H 0.208 0.792 23 H 0.105 0.895 24 H 0.098 0.902 25 H 0.109 0.891 26 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges -0.691 -7.478 3.868 8.447 hybrid contribution -0.801 -1.726 -0.024 1.903 sum -1.492 -9.204 3.844 10.086 Atomic orbital electron populations 1.70866 1.06507 1.29400 1.47482 1.26485 0.96559 1.02558 0.95640 0.83099 0.74366 0.73456 0.77141 1.21128 1.20966 1.20683 1.20583 0.94658 0.83927 1.51869 0.88389 1.41933 1.08130 1.05331 1.65768 1.18807 0.87711 0.83398 0.84287 1.90567 1.13396 1.86677 1.54248 1.23002 1.02149 0.96018 0.96605 0.85729 1.23919 0.98964 1.04708 0.91996 0.86014 1.22804 0.96566 1.01694 0.95717 1.23770 0.95737 0.97817 0.85314 1.88897 1.26368 1.92266 1.16983 1.23660 0.84327 0.95326 0.99312 0.84997 0.92740 0.79160 0.89536 0.90179 0.89114 0.92593 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -25.69 13.68 55.50 0.76 -24.93 15 2 C -0.01 -0.28 5.50 -17.46 -0.10 -0.38 15 3 Si 1.09 24.76 29.92 -169.99 -5.09 19.68 15 4 H -0.28 -6.23 7.11 56.52 0.40 -5.83 15 5 H -0.28 -6.24 7.11 56.52 0.40 -5.83 15 6 H -0.28 -6.25 7.11 56.52 0.40 -5.85 15 7 C -0.38 -10.98 9.68 -14.93 -0.14 -11.12 15 8 H 0.10 3.00 7.16 -52.49 -0.38 2.63 15 9 N -0.57 -14.93 5.28 -10.96 -0.06 -14.99 15 10 C 0.47 11.79 5.92 -10.99 -0.06 11.72 15 11 O -0.57 -16.53 15.40 -11.29 -0.17 -16.70 15 12 C -0.16 -2.92 6.14 -91.77 -0.56 -3.49 15 13 H 0.12 1.98 8.14 -51.93 -0.42 1.55 15 14 C -0.18 -2.75 7.08 -89.23 -0.63 -3.38 15 15 H 0.12 1.48 8.14 -51.93 -0.42 1.06 15 16 C -0.13 -2.10 6.61 -24.76 -0.16 -2.27 15 17 C 0.05 0.79 7.72 38.21 0.29 1.09 15 18 O -0.33 -6.51 10.16 -52.07 -0.53 -7.04 15 19 C 0.03 0.55 7.48 -26.16 -0.20 0.36 15 20 H 0.13 1.76 8.14 -51.93 -0.42 1.34 15 21 H 0.26 7.18 6.78 -40.82 -0.28 6.90 15 22 H 0.38 9.09 6.73 -40.82 -0.27 8.82 15 23 H 0.09 1.74 7.13 -51.93 -0.37 1.37 15 24 H 0.08 1.04 8.14 -51.93 -0.42 0.61 15 25 H 0.09 1.39 8.14 -51.93 -0.42 0.97 15 26 H 0.06 0.71 8.14 -51.93 -0.42 0.28 15 LS Contribution 228.54 15.07 3.44 3.44 Total: -1.00 -34.15 228.54 -5.84 -39.99 By element: Atomic # 1 Polarization: 10.65 SS G_CDS: -2.63 Total: 8.02 kcal Atomic # 6 Polarization: -5.90 SS G_CDS: -1.57 Total: -7.47 kcal Atomic # 7 Polarization: -40.62 SS G_CDS: 0.70 Total: -39.92 kcal Atomic # 8 Polarization: -23.03 SS G_CDS: -0.70 Total: -23.73 kcal Atomic # 14 Polarization: 24.76 SS G_CDS: -5.09 Total: 19.68 kcal Total LS contribution 3.44 Total: 3.44 kcal Total: -34.15 -5.84 -39.99 kcal The number of atoms in the molecule is 26 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000307583409.mol2 26 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -4.431 kcal (2) G-P(sol) polarization free energy of solvation -34.152 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -38.583 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.838 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.989 kcal (6) G-S(sol) free energy of system = (1) + (5) -44.421 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.14 seconds