Wall clock time and date at job start Mon Mar 30 2020 02:17:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31414 * 1 3 3 Si 1.86798 * 119.99943 * 2 1 4 4 H 1.48496 * 109.47524 * 269.99788 * 3 2 1 5 5 H 1.48501 * 109.46961 * 149.99877 * 3 2 1 6 6 H 1.48503 * 109.46991 * 30.00341 * 3 2 1 7 7 C 1.38955 * 120.00027 * 179.97438 * 2 1 3 8 8 H 1.08000 * 119.99625 * 180.02562 * 7 2 1 9 9 N 1.37102 * 119.99769 * 0.02562 * 7 2 1 10 10 C 1.34771 * 119.99482 * 180.02562 * 9 7 2 11 11 O 1.21292 * 120.00442 * 359.97438 * 10 9 7 12 12 C 1.50703 * 119.99771 * 180.02562 * 10 9 7 13 13 H 1.09000 * 115.52433 * 62.69843 * 12 10 9 14 14 C 1.52902 * 117.45049 * 277.24535 * 12 10 9 15 15 H 1.09004 * 119.74671 * 139.17105 * 14 12 10 16 16 C 1.54750 * 118.19249 * 342.88421 * 14 12 10 17 17 C 1.54994 * 102.12673 * 275.88668 * 16 14 12 18 18 O 1.44381 * 103.49859 * 37.10307 * 17 16 14 19 19 C 1.43785 * 106.89547 * 320.06212 * 18 17 16 20 20 H 1.09001 * 117.77359 * 245.48399 * 19 18 17 21 21 H 0.97006 * 119.99663 * 179.97438 * 1 2 3 22 22 H 0.96997 * 120.00225 * 0.02562 * 9 7 2 23 23 H 1.09007 * 110.86737 * 34.04204 * 16 14 12 24 24 H 1.08996 * 110.87412 * 157.72390 * 16 14 12 25 25 H 1.09002 * 110.61985 * 155.60884 * 17 16 14 26 26 H 1.09006 * 110.61272 * 278.60685 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3141 0.0000 0.0000 3 14 2.2481 1.6177 0.0000 4 1 2.4957 2.0465 -1.4000 5 1 3.5457 1.4401 0.7001 6 1 1.4456 2.6526 0.7001 7 6 2.0089 -1.2034 0.0005 8 1 3.0889 -1.2033 0.0010 9 7 1.3234 -2.3907 0.0005 10 6 1.9973 -3.5578 0.0016 11 8 3.2102 -3.5578 0.0021 12 6 1.2438 -4.8629 0.0010 13 1 0.6193 -5.0443 -0.8737 14 6 0.7416 -5.3875 1.3466 15 1 -0.2488 -5.8374 1.4161 16 6 1.3583 -4.7976 2.6375 17 6 2.6424 -5.6496 2.8037 18 8 3.0971 -5.8420 1.4469 19 6 1.9276 -6.0729 0.6430 20 1 1.8151 -7.0532 0.1798 21 1 -0.4850 -0.8401 -0.0004 22 1 0.3534 -2.3907 -0.0002 23 1 1.6057 -3.7445 2.5035 24 1 0.6883 -4.9353 3.4861 25 1 3.3890 -5.1092 3.3857 26 1 2.4099 -6.6071 3.2700 RHF calculation, no. of doubly occupied orbitals= 36 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000307583409.mol2 26 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:17:23 Heat of formation + Delta-G solvation = -69.472272 kcal Electronic energy + Delta-G solvation = -12619.522350 eV Core-core repulsion = 10277.494222 eV Total energy + Delta-G solvation = -2342.028128 eV No. of doubly occupied orbitals = 36 Molecular weight (most abundant/longest-lived isotopes) = 197.084 amu Computer time = 0.16 seconds Orbital eigenvalues (eV) -41.66957 -39.42145 -36.34178 -34.92156 -32.99718 -31.53121 -27.28157 -25.00694 -23.62737 -22.05625 -20.74818 -19.94710 -18.21804 -17.68140 -16.71992 -16.34764 -15.99724 -15.55969 -15.21484 -14.43244 -14.13043 -13.88576 -13.36920 -12.85841 -12.80016 -12.24865 -11.96495 -11.94150 -11.68871 -11.55183 -11.09973 -10.45309 -10.24894 -10.11017 -8.95359 -6.08399 1.49256 1.52066 1.80061 1.91352 2.28608 2.40997 2.91100 3.08188 3.17961 3.52354 3.72908 3.82762 4.14369 4.20698 4.23099 4.50083 4.60624 4.77972 4.88078 4.89718 5.13667 5.61072 5.94065 5.95014 6.56181 6.74429 7.43794 7.95272 8.52541 Molecular weight = 197.08amu Principal moments of inertia in cm(-1) A = 0.058616 B = 0.009936 C = 0.009710 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 477.574088 B = 2817.478871 C = 2882.808166 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.915 5.915 2 C -0.041 4.041 3 Si 1.135 2.865 4 H -0.269 1.269 5 H -0.280 1.280 6 H -0.269 1.269 7 C -0.412 4.412 8 H 0.068 0.932 9 N -0.582 5.582 10 C 0.471 3.529 11 O -0.618 6.618 12 C -0.187 4.187 13 H 0.157 0.843 14 C -0.148 4.148 15 H 0.172 0.828 16 C -0.137 4.137 17 C 0.046 3.954 18 O -0.373 6.373 19 C 0.031 3.969 20 H 0.176 0.824 21 H 0.259 0.741 22 H 0.384 0.616 23 H 0.034 0.966 24 H 0.118 0.882 25 H 0.081 0.919 26 H 0.099 0.901 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.976 -10.423 4.385 11.693 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.554 5.554 2 C -0.239 4.239 3 Si 0.955 3.045 4 H -0.195 1.195 5 H -0.205 1.205 6 H -0.194 1.194 7 C -0.541 4.541 8 H 0.086 0.914 9 N -0.220 5.220 10 C 0.259 3.741 11 O -0.504 6.504 12 C -0.208 4.208 13 H 0.174 0.826 14 C -0.166 4.166 15 H 0.189 0.811 16 C -0.174 4.174 17 C -0.029 4.029 18 O -0.292 6.292 19 C -0.027 4.027 20 H 0.193 0.807 21 H 0.070 0.930 22 H 0.218 0.782 23 H 0.053 0.947 24 H 0.137 0.863 25 H 0.099 0.901 26 H 0.117 0.883 Dipole moment (debyes) X Y Z Total from point charges -2.116 -8.756 4.332 9.995 hybrid contribution -0.348 -1.386 -0.136 1.435 sum -2.464 -10.141 4.196 11.249 Atomic orbital electron populations 1.70939 1.06886 1.29459 1.48138 1.27830 0.96709 1.05210 0.94142 0.82605 0.73557 0.70201 0.78127 1.19466 1.20548 1.19413 1.20537 0.93701 0.85868 1.53986 0.91434 1.41970 1.08429 1.05265 1.66353 1.19929 0.87520 0.85094 0.81540 1.90523 1.16069 1.87852 1.55957 1.23050 1.04276 0.93194 1.00283 0.82560 1.24161 1.00651 1.02397 0.89393 0.81114 1.22864 0.97880 0.98718 0.97953 1.23986 0.95205 0.99733 0.84023 1.88843 1.28739 1.92551 1.19040 1.24168 0.83964 0.95808 0.98784 0.80749 0.93007 0.78233 0.94666 0.86340 0.90104 0.88306 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -52.05 13.68 21.67 0.30 -51.76 15 2 C -0.04 -2.27 5.50 84.93 0.47 -1.81 15 3 Si 1.14 49.91 29.92 68.60 2.05 51.96 15 4 H -0.27 -11.14 7.11 99.48 0.71 -10.43 15 5 H -0.28 -12.01 7.11 99.48 0.71 -11.30 15 6 H -0.27 -11.28 7.11 99.48 0.71 -10.57 15 7 C -0.41 -24.55 9.68 84.04 0.81 -23.73 15 8 H 0.07 4.37 7.16 -2.91 -0.02 4.35 15 9 N -0.58 -31.08 5.28 -306.98 -1.62 -32.71 15 10 C 0.47 23.99 5.92 87.66 0.52 24.51 15 11 O -0.62 -37.58 15.40 13.03 0.20 -37.37 15 12 C -0.19 -6.67 6.14 -11.54 -0.07 -6.74 15 13 H 0.16 4.51 8.14 -2.39 -0.02 4.49 15 14 C -0.15 -4.04 7.08 -9.89 -0.07 -4.11 15 15 H 0.17 3.07 8.14 -2.38 -0.02 3.05 15 16 C -0.14 -4.16 6.61 31.87 0.21 -3.95 15 17 C 0.05 1.38 7.72 72.66 0.56 1.95 15 18 O -0.37 -14.48 10.16 -132.88 -1.35 -15.82 15 19 C 0.03 0.96 7.48 30.96 0.23 1.19 15 20 H 0.18 3.83 8.14 -2.39 -0.02 3.81 15 21 H 0.26 14.30 6.78 -92.70 -0.63 13.67 15 22 H 0.38 18.88 6.73 -92.71 -0.62 18.25 15 23 H 0.03 1.43 7.13 -2.38 -0.02 1.41 15 24 H 0.12 2.64 8.14 -2.39 -0.02 2.62 15 25 H 0.08 2.49 8.14 -2.39 -0.02 2.47 15 26 H 0.10 2.12 8.14 -2.38 -0.02 2.10 15 Total: -1.00 -77.41 228.54 2.95 -74.46 By element: Atomic # 1 Polarization: 23.22 SS G_CDS: 0.71 Total: 23.93 kcal Atomic # 6 Polarization: -15.35 SS G_CDS: 2.66 Total: -12.69 kcal Atomic # 7 Polarization: -83.14 SS G_CDS: -1.33 Total: -84.46 kcal Atomic # 8 Polarization: -52.05 SS G_CDS: -1.15 Total: -53.20 kcal Atomic # 14 Polarization: 49.91 SS G_CDS: 2.05 Total: 51.96 kcal Total: -77.41 2.95 -74.46 kcal The number of atoms in the molecule is 26 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000307583409.mol2 26 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 4.985 kcal (2) G-P(sol) polarization free energy of solvation -77.411 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -72.426 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.954 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.457 kcal (6) G-S(sol) free energy of system = (1) + (5) -69.472 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.16 seconds