Wall clock time and date at job start Mon Mar 30 2020 02:14:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31624 * 1 3 3 Si 1.86800 * 119.99950 * 2 1 4 4 H 1.48501 * 109.46758 * 90.00140 * 3 2 1 5 5 H 1.48499 * 109.47026 * 209.99987 * 3 2 1 6 6 H 1.48496 * 109.47474 * 330.00023 * 3 2 1 7 7 C 1.38811 * 119.99540 * 180.27867 * 2 1 3 8 8 H 1.08001 * 119.99999 * 359.71854 * 7 2 1 9 9 N 1.36936 * 119.99842 * 179.72505 * 7 2 1 10 10 C 1.46493 * 120.00314 * 180.02562 * 9 7 2 11 11 H 1.09004 * 109.47092 * 34.99415 * 10 9 7 12 12 C 1.53006 * 109.46887 * 274.99849 * 10 9 7 13 13 O 1.42903 * 109.47139 * 294.99877 * 12 10 9 14 14 C 1.50697 * 109.47479 * 154.99980 * 10 9 7 15 15 C 1.34515 * 125.78801 * 220.00013 * 14 10 9 16 16 C 1.41380 * 106.83901 * 179.97438 * 15 14 10 17 17 C 1.34514 * 106.84359 * 359.97438 * 16 15 14 18 18 O 1.34297 * 125.78948 * 39.68963 * 14 10 9 19 19 H 0.96999 * 119.99889 * 359.97438 * 1 2 3 20 20 H 0.97000 * 119.99646 * 359.97438 * 9 7 2 21 21 H 1.08997 * 109.47285 * 54.99959 * 12 10 9 22 22 H 1.09002 * 109.47155 * 175.00004 * 12 10 9 23 23 H 0.96700 * 113.99965 * 180.02562 * 13 12 10 24 24 H 1.07995 * 126.58099 * 0.03586 * 15 14 10 25 25 H 1.08010 * 126.57781 * 179.97438 * 16 15 14 26 26 H 1.08005 * 125.78987 * 180.02562 * 17 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 2.4977 2.0463 1.4001 5 1 3.5478 1.4402 -0.7000 6 1 1.4478 2.6527 -0.7000 7 6 2.0102 -1.2022 -0.0058 8 1 1.4701 -2.1375 -0.0058 9 7 3.3795 -1.2022 -0.0115 10 6 4.1120 -2.4709 -0.0183 11 1 3.5621 -3.2048 -0.6075 12 6 4.2641 -2.9795 1.4167 13 8 5.0834 -2.0739 2.1588 14 6 5.4758 -2.2604 -0.6238 15 6 6.1042 -3.1060 -1.4602 16 6 7.3493 -2.5169 -1.7790 17 6 7.4071 -1.3464 -1.1189 18 8 6.2676 -1.1941 -0.4245 19 1 -0.4850 0.8400 0.0004 20 1 3.8645 -0.3622 -0.0119 21 1 3.2818 -3.0473 1.8842 22 1 4.7299 -3.9650 1.4055 23 1 5.2233 -2.3343 3.0795 24 1 5.7291 -4.0526 -1.8200 25 1 8.1084 -2.9280 -2.4282 26 1 8.2288 -0.6460 -1.1458 RHF calculation, no. of doubly occupied orbitals= 36 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000308086527.mol2 26 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:14:02 Heat of formation + Delta-G solvation = -43.004233 kcal Electronic energy + Delta-G solvation = -12520.867635 eV Core-core repulsion = 10179.987247 eV Total energy + Delta-G solvation = -2340.880388 eV No. of doubly occupied orbitals = 36 Molecular weight (most abundant/longest-lived isotopes) = 197.084 amu Computer time = 0.17 seconds Orbital eigenvalues (eV) -43.36813 -38.40530 -36.23655 -34.05199 -33.60006 -31.16905 -28.54395 -25.63242 -23.25647 -22.49980 -21.06295 -19.99974 -18.27993 -18.06616 -16.99840 -16.52685 -16.24399 -15.24725 -14.92161 -14.81144 -14.09789 -13.91980 -13.59536 -13.32754 -12.97918 -12.83177 -12.52683 -12.11943 -11.85126 -11.13779 -10.81774 -10.72548 -9.45437 -9.24791 -8.06767 -5.39966 0.93572 1.35298 1.36805 1.44558 1.80366 2.25150 2.44929 3.25131 3.42065 3.64306 3.86534 4.24953 4.28720 4.44069 4.57464 4.74171 4.83469 5.01823 5.10162 5.29878 5.67592 5.73952 6.16689 6.37439 6.97940 7.03720 7.75638 7.95563 9.13766 Molecular weight = 197.08amu Principal moments of inertia in cm(-1) A = 0.039631 B = 0.012163 C = 0.011081 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 706.344105 B = 2301.536480 C = 2526.316688 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.976 5.976 2 C -0.053 4.053 3 Si 0.946 3.054 4 H -0.281 1.281 5 H -0.267 1.267 6 H -0.290 1.290 7 C -0.233 4.233 8 H 0.073 0.927 9 N -0.744 5.744 10 C 0.245 3.755 11 H 0.102 0.898 12 C 0.066 3.934 13 O -0.579 6.579 14 C -0.012 4.012 15 C -0.224 4.224 16 C -0.217 4.217 17 C -0.061 4.061 18 O -0.189 6.189 19 H 0.259 0.741 20 H 0.365 0.635 21 H 0.043 0.957 22 H 0.069 0.931 23 H 0.387 0.613 24 H 0.164 0.836 25 H 0.175 0.825 26 H 0.231 0.769 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 15.621 -5.988 -0.232 16.731 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.626 5.626 2 C -0.245 4.245 3 Si 0.774 3.226 4 H -0.207 1.207 5 H -0.192 1.192 6 H -0.216 1.216 7 C -0.364 4.364 8 H 0.091 0.909 9 N -0.386 5.386 10 C 0.137 3.863 11 H 0.120 0.880 12 C -0.014 4.014 13 O -0.386 6.386 14 C -0.064 4.064 15 C -0.243 4.243 16 C -0.236 4.236 17 C -0.128 4.128 18 O -0.085 6.085 19 H 0.068 0.932 20 H 0.198 0.802 21 H 0.062 0.938 22 H 0.087 0.913 23 H 0.235 0.765 24 H 0.182 0.818 25 H 0.193 0.807 26 H 0.248 0.752 Dipole moment (debyes) X Y Z Total from point charges 15.323 -5.514 -0.632 16.297 hybrid contribution 0.051 0.679 0.475 0.831 sum 15.374 -4.835 -0.156 16.117 Atomic orbital electron populations 1.69842 1.06652 1.26658 1.59449 1.25320 0.95965 1.00645 1.02603 0.85538 0.78287 0.80755 0.77971 1.20688 1.19211 1.21640 1.19093 0.81862 0.94038 1.41368 0.90919 1.42691 1.02661 1.03409 1.89876 1.19287 0.83974 0.89358 0.93687 0.88042 1.22881 0.93742 0.91992 0.92778 1.86534 1.71979 1.52297 1.27793 1.22802 0.94387 0.87772 1.01403 1.21871 0.96927 1.02955 1.02591 1.22104 0.99339 0.96704 1.05474 1.24816 0.89523 1.01171 0.97305 1.84051 1.26006 1.40899 1.57569 0.93189 0.80185 0.93824 0.91316 0.76541 0.81816 0.80744 0.75230 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.98 -62.63 13.97 21.65 0.30 -62.33 15 2 C -0.05 -3.19 5.50 84.86 0.47 -2.72 15 3 Si 0.95 48.11 27.74 68.60 1.90 50.02 15 4 H -0.28 -14.06 7.11 99.48 0.71 -13.35 15 5 H -0.27 -13.03 6.51 99.48 0.65 -12.38 15 6 H -0.29 -14.57 7.11 99.48 0.71 -13.87 15 7 C -0.23 -13.39 10.41 84.03 0.87 -12.51 15 8 H 0.07 4.38 8.06 -2.91 -0.02 4.36 15 9 N -0.74 -36.92 4.86 -326.51 -1.59 -38.51 15 10 C 0.25 9.75 3.14 44.25 0.14 9.89 15 11 H 0.10 3.83 8.07 -2.39 -0.02 3.81 15 12 C 0.07 2.27 6.85 71.98 0.49 2.76 15 13 O -0.58 -20.18 12.99 -148.98 -1.94 -22.11 15 14 C -0.01 -0.46 5.67 24.83 0.14 -0.32 15 15 C -0.22 -6.75 10.80 22.19 0.24 -6.51 15 16 C -0.22 -5.62 10.91 22.19 0.24 -5.38 15 17 C -0.06 -1.69 12.09 66.97 0.81 -0.88 15 18 O -0.19 -7.10 10.19 -2.47 -0.03 -7.12 15 19 H 0.26 15.87 8.31 -92.71 -0.77 15.10 15 20 H 0.37 18.70 5.36 -92.71 -0.50 18.21 15 21 H 0.04 1.60 8.14 -2.39 -0.02 1.58 15 22 H 0.07 1.86 8.14 -2.39 -0.02 1.84 15 23 H 0.39 9.27 9.12 -74.06 -0.68 8.59 15 24 H 0.16 4.08 8.06 -2.91 -0.02 4.06 15 25 H 0.18 3.22 8.06 -2.91 -0.02 3.19 15 26 H 0.23 4.20 8.06 -2.91 -0.02 4.17 15 Total: -1.00 -72.43 235.22 2.03 -70.40 By element: Atomic # 1 Polarization: 25.35 SS G_CDS: -0.03 Total: 25.32 kcal Atomic # 6 Polarization: -19.07 SS G_CDS: 3.41 Total: -15.66 kcal Atomic # 7 Polarization: -99.55 SS G_CDS: -1.29 Total: -100.84 kcal Atomic # 8 Polarization: -27.27 SS G_CDS: -1.96 Total: -29.23 kcal Atomic # 14 Polarization: 48.11 SS G_CDS: 1.90 Total: 50.02 kcal Total: -72.43 2.03 -70.40 kcal The number of atoms in the molecule is 26 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000308086527.mol2 26 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 27.393 kcal (2) G-P(sol) polarization free energy of solvation -72.427 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -45.033 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.029 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.398 kcal (6) G-S(sol) free energy of system = (1) + (5) -43.004 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.17 seconds