Wall clock time and date at job start Mon Mar 30 2020 01:48:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31578 * 1 3 3 Si 1.86795 * 119.99852 * 2 1 4 4 H 1.48502 * 109.46858 * 239.99941 * 3 2 1 5 5 H 1.48498 * 109.47305 * 0.02562 * 3 2 1 6 6 H 1.48504 * 109.46983 * 120.00203 * 3 2 1 7 7 C 1.38652 * 119.99740 * 180.02562 * 2 1 3 8 8 H 1.08001 * 119.99510 * 180.02562 * 7 2 1 9 9 O 1.34681 * 120.00103 * 359.97438 * 7 2 1 10 10 N 1.21801 * 116.99960 * 179.97438 * 9 7 2 11 11 C 1.30018 * 120.00131 * 179.97438 * 10 9 7 12 12 C 1.46461 * 120.00080 * 180.02562 * 11 10 9 13 13 C 1.36694 * 125.46193 * 180.02562 * 12 11 10 14 14 C 1.37675 * 113.24279 * 179.97438 * 13 12 11 15 15 C 1.33676 * 115.09596 * 359.97438 * 14 13 12 16 16 S 1.70607 * 111.00054 * 0.02562 * 15 14 13 17 17 H 0.96995 * 119.99790 * 359.97438 * 1 2 3 18 18 H 1.07999 * 120.00181 * 0.02562 * 11 10 9 19 19 H 1.08000 * 123.37459 * 0.26400 * 13 12 11 20 20 H 1.07999 * 122.44704 * 180.02562 * 14 13 12 21 21 H 1.08004 * 124.49913 * 180.02562 * 15 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3158 0.0000 0.0000 3 14 2.2497 1.6177 0.0000 4 1 3.1035 1.6963 -1.2125 5 1 1.2847 2.7464 0.0006 6 1 3.1035 1.6964 1.2125 7 6 2.0090 -1.2008 -0.0005 8 1 3.0890 -1.2007 -0.0001 9 8 1.3355 -2.3671 -0.0005 10 7 1.9989 -3.3887 -0.0015 11 6 1.4086 -4.5471 -0.0011 12 6 2.2063 -5.7755 -0.0017 13 6 1.7045 -7.0470 -0.0018 14 6 2.6817 -8.0167 -0.0030 15 6 3.9368 -7.5569 -0.0043 16 16 3.9630 -5.8510 -0.0035 17 1 -0.4849 0.8400 0.0004 18 1 0.3301 -4.6037 -0.0003 19 1 0.6474 -7.2685 -0.0056 20 1 2.4510 -9.0718 -0.0036 21 1 4.8174 -8.1822 -0.0057 RHF calculation, no. of doubly occupied orbitals= 32 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000379267672.mol2 21 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:48:38 Heat of formation + Delta-G solvation = 35.011264 kcal Electronic energy + Delta-G solvation = -9607.099691 eV Core-core repulsion = 7576.522085 eV Total energy + Delta-G solvation = -2030.577606 eV No. of doubly occupied orbitals = 32 Molecular weight (most abundant/longest-lived isotopes) = 197.025 amu Computer time = 0.11 seconds Orbital eigenvalues (eV) -41.91092 -38.56667 -35.41728 -33.75220 -30.14141 -27.34482 -25.23026 -22.79875 -20.75238 -19.90510 -19.00628 -17.49041 -16.76394 -16.44697 -16.33280 -15.86113 -14.07421 -14.04336 -13.56307 -13.40623 -13.08299 -12.83085 -12.65047 -12.13752 -11.61462 -11.43578 -10.59911 -10.40426 -9.41479 -8.96749 -8.57698 -6.25674 -0.17223 0.77586 1.32746 1.36864 1.36988 1.55058 1.57174 2.11678 2.20463 2.94157 3.00736 4.26640 4.33642 4.55935 4.76708 4.86589 5.09486 5.22108 5.49777 5.65501 5.85973 6.31149 6.87795 8.17077 8.68252 Molecular weight = 197.03amu Principal moments of inertia in cm(-1) A = 0.088514 B = 0.007522 C = 0.006950 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 316.259573 B = 3721.335037 C = 4027.752683 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.912 5.912 2 C -0.012 4.012 3 Si 1.033 2.967 4 H -0.257 1.257 5 H -0.265 1.265 6 H -0.257 1.257 7 C -0.409 4.409 8 H 0.093 0.907 9 O -0.010 6.010 10 N -0.371 5.371 11 C -0.015 4.015 12 C -0.143 4.143 13 C -0.140 4.140 14 C -0.133 4.133 15 C -0.264 4.264 16 S 0.158 5.842 17 H 0.280 0.720 18 H 0.107 0.893 19 H 0.158 0.842 20 H 0.170 0.830 21 H 0.190 0.810 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.271 -10.102 -0.010 11.890 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.549 5.549 2 C -0.212 4.212 3 Si 0.851 3.149 4 H -0.182 1.182 5 H -0.189 1.189 6 H -0.182 1.182 7 C -0.487 4.487 8 H 0.111 0.889 9 O -0.073 6.073 10 N -0.086 5.086 11 C -0.208 4.208 12 C -0.262 4.262 13 C -0.173 4.173 14 C -0.164 4.164 15 C -0.401 4.401 16 S 0.423 5.577 17 H 0.090 0.910 18 H 0.125 0.875 19 H 0.175 0.825 20 H 0.187 0.813 21 H 0.207 0.793 Dipole moment (debyes) X Y Z Total from point charges 7.939 -8.688 -0.012 11.769 hybrid contribution -1.927 -0.532 0.002 1.999 sum 6.012 -9.220 -0.009 11.007 Atomic orbital electron populations 1.70157 1.07905 1.29749 1.47063 1.26701 0.97072 1.02567 0.94873 0.84460 0.77262 0.73193 0.80005 1.18162 1.18916 1.18172 1.21873 0.92465 0.79519 1.54830 0.88932 1.83318 1.35541 1.10514 1.77973 1.70169 1.35472 0.94687 1.08265 1.22440 0.96499 0.87841 1.14061 1.22996 0.96645 0.94883 1.11644 1.20941 1.02107 0.89485 1.04781 1.20159 0.90905 1.01698 1.03597 1.25412 1.03218 0.99145 1.12353 1.83398 1.02487 1.02310 1.69554 0.91046 0.87535 0.82481 0.81294 0.79267 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -54.02 13.67 21.62 0.30 -53.73 14 2 C -0.01 -0.66 5.49 84.83 0.47 -0.19 14 3 Si 1.03 41.85 29.55 68.60 2.03 43.87 14 4 H -0.26 -9.87 7.11 99.48 0.71 -9.16 14 5 H -0.27 -10.08 7.11 99.48 0.71 -9.37 14 6 H -0.26 -9.87 7.11 99.48 0.71 -9.16 14 7 C -0.41 -24.24 10.14 67.92 0.69 -23.55 14 8 H 0.09 5.23 7.83 -2.91 -0.02 5.20 14 9 O -0.01 -0.64 9.89 64.28 0.64 0.00 14 10 N -0.37 -20.27 10.30 -52.81 -0.54 -20.81 14 11 C -0.02 -0.73 10.95 87.10 0.95 0.23 14 12 C -0.14 -5.49 6.45 24.05 0.16 -5.33 14 13 C -0.14 -4.22 10.27 21.77 0.22 -4.00 14 14 C -0.13 -3.26 10.15 21.10 0.21 -3.04 14 15 C -0.26 -6.61 10.91 66.78 0.73 -5.88 14 16 S 0.16 5.29 22.84 -56.49 -1.29 4.00 14 17 H 0.28 15.05 8.31 -92.71 -0.77 14.28 14 18 H 0.11 4.90 8.06 -2.91 -0.02 4.87 14 19 H 0.16 4.05 8.06 -2.91 -0.02 4.03 14 20 H 0.17 2.88 8.06 -2.91 -0.02 2.85 14 21 H 0.19 3.38 8.06 -2.91 -0.02 3.36 14 Total: -1.00 -67.31 220.30 5.79 -61.52 By element: Atomic # 1 Polarization: 5.67 SS G_CDS: 1.23 Total: 6.91 kcal Atomic # 6 Polarization: -45.20 SS G_CDS: 3.43 Total: -41.77 kcal Atomic # 7 Polarization: -74.29 SS G_CDS: -0.25 Total: -74.54 kcal Atomic # 8 Polarization: -0.64 SS G_CDS: 0.64 Total: 0.00 kcal Atomic # 14 Polarization: 41.85 SS G_CDS: 2.03 Total: 43.87 kcal Atomic # 16 Polarization: 5.29 SS G_CDS: -1.29 Total: 4.00 kcal Total: -67.31 5.79 -61.52 kcal The number of atoms in the molecule is 21 The average number of expansion shells was 14.00 The maximum number of expansion shells was 14 The minimum number of expansion shells was 14 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000379267672.mol2 21 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 96.536 kcal (2) G-P(sol) polarization free energy of solvation -67.312 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 29.224 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.788 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.524 kcal (6) G-S(sol) free energy of system = (1) + (5) 35.011 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.11 seconds