Wall clock time and date at job start Mon Mar 30 2020 01:53:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31441 * 1 3 3 Si 1.86801 * 120.00076 * 2 1 4 4 H 1.48500 * 109.47099 * 269.99872 * 3 2 1 5 5 H 1.48499 * 109.46984 * 29.99656 * 3 2 1 6 6 H 1.48500 * 109.47117 * 149.99532 * 3 2 1 7 7 C 1.38755 * 120.00098 * 179.97438 * 2 1 3 8 8 H 1.08003 * 120.00068 * 180.02562 * 7 2 1 9 9 O 1.34922 * 120.00272 * 0.02562 * 7 2 1 10 10 C 1.34310 * 117.00349 * 179.97438 * 9 7 2 11 11 O 1.21213 * 119.99644 * 0.02562 * 10 9 7 12 12 C 1.50693 * 119.99805 * 180.27868 * 10 9 7 13 13 C 1.50708 * 109.46934 * 179.72720 * 12 10 9 14 14 C 1.41381 * 126.80338 * 124.70879 * 13 12 10 15 15 C 1.35446 * 103.98610 * 179.88561 * 14 13 12 16 16 O 1.34043 * 106.44555 * 0.36946 * 15 14 13 17 17 N 1.20922 * 111.56643 * 359.74669 * 16 15 14 18 18 H 0.96993 * 120.00374 * 0.02562 * 1 2 3 19 19 H 1.09004 * 109.47536 * 299.72288 * 12 10 9 20 20 H 1.08994 * 109.47555 * 59.72727 * 12 10 9 21 21 H 1.07997 * 128.00622 * 0.02608 * 14 13 12 22 22 H 1.07998 * 126.77790 * 180.09110 * 15 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3144 0.0000 0.0000 3 14 2.2484 1.6177 0.0000 4 1 2.4960 2.0464 -1.4001 5 1 1.4458 2.6527 0.7000 6 1 3.5459 1.4402 0.7001 7 6 2.0082 -1.2016 0.0005 8 1 3.0882 -1.2016 0.0010 9 8 1.3337 -2.3701 0.0005 10 6 2.0652 -3.4966 0.0005 11 8 3.2756 -3.4330 0.0010 12 6 1.3810 -4.8392 -0.0058 13 6 2.4190 -5.9319 -0.0112 14 6 2.5351 -6.9944 0.9142 15 6 3.6102 -7.6929 0.4774 16 8 4.0616 -7.0535 -0.6107 17 7 3.3895 -6.0812 -0.8658 18 1 -0.4850 0.8400 -0.0004 19 1 0.7584 -4.9341 0.8839 20 1 0.7581 -4.9255 -0.8960 21 1 1.9099 -7.2023 1.7699 22 1 4.0248 -8.5860 0.9211 RHF calculation, no. of doubly occupied orbitals= 35 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000388452442.mol2 22 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:53:47 Heat of formation + Delta-G solvation = -17.769783 kcal Electronic energy + Delta-G solvation = -11871.263759 eV Core-core repulsion = 9395.644524 eV Total energy + Delta-G solvation = -2475.619235 eV No. of doubly occupied orbitals = 35 Molecular weight (most abundant/longest-lived isotopes) = 197.052 amu Computer time = 0.12 seconds Orbital eigenvalues (eV) -44.67633 -38.94108 -35.47815 -34.07072 -32.12496 -31.49199 -29.24620 -25.25431 -22.92035 -21.83446 -19.76843 -17.72594 -17.44246 -17.36138 -16.33938 -15.10944 -14.73134 -14.40639 -14.10249 -13.23742 -12.77304 -12.30663 -12.18656 -11.58295 -11.16475 -10.94096 -10.42579 -10.34094 -9.89567 -9.78381 -9.38264 -8.99144 -8.55612 -6.39032 -4.06727 1.76624 2.47306 3.13274 3.20827 3.27208 3.50023 3.54781 3.96998 4.42734 4.52368 4.95055 5.14208 5.32961 5.51465 5.57869 5.85425 5.99801 6.17994 6.78751 7.42049 7.97793 8.59463 8.73857 9.09938 9.86576 10.79144 Molecular weight = 197.05amu Principal moments of inertia in cm(-1) A = 0.090454 B = 0.007868 C = 0.007457 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 309.474244 B = 3557.985054 C = 3753.993946 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.867 5.867 2 C 0.041 3.959 3 Si 0.944 3.056 4 H -0.273 1.273 5 H -0.278 1.278 6 H -0.267 1.267 7 C -0.381 4.381 8 H 0.095 0.905 9 O -0.215 6.215 10 C 0.399 3.601 11 O -0.543 6.543 12 C -0.029 4.029 13 C 0.030 3.970 14 C -0.226 4.226 15 C -0.075 4.075 16 O 0.102 5.898 17 N -0.334 5.334 18 H 0.269 0.731 19 H 0.114 0.886 20 H 0.111 0.889 21 H 0.171 0.829 22 H 0.213 0.787 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.977 -12.102 2.262 12.470 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.504 5.504 2 C -0.162 4.162 3 Si 0.768 3.232 4 H -0.199 1.199 5 H -0.203 1.203 6 H -0.192 1.192 7 C -0.457 4.457 8 H 0.113 0.887 9 O -0.122 6.122 10 C 0.244 3.756 11 O -0.440 6.440 12 C -0.067 4.067 13 C -0.130 4.130 14 C -0.248 4.248 15 C -0.156 4.156 16 O 0.032 5.968 17 N -0.035 5.035 18 H 0.079 0.921 19 H 0.132 0.868 20 H 0.129 0.871 21 H 0.188 0.812 22 H 0.230 0.770 Dipole moment (debyes) X Y Z Total from point charges 2.496 -11.208 1.179 11.543 hybrid contribution -0.051 0.435 0.868 0.973 sum 2.445 -10.773 2.047 11.235 Atomic orbital electron populations 1.69988 1.05968 1.27647 1.46825 1.25329 0.95834 0.98821 0.96254 0.85667 0.79012 0.79727 0.78746 1.19871 1.20310 1.19150 1.21223 0.92381 0.79773 1.52328 0.88737 1.83859 1.39225 1.13262 1.75897 1.22791 0.86764 0.86921 0.79138 1.90598 1.15513 1.87900 1.49946 1.19390 0.94594 0.86721 1.06001 1.23049 0.97506 0.98391 0.94009 1.22680 1.01698 0.97054 1.03342 1.25919 0.97287 1.01074 0.91344 1.84875 1.44999 1.29037 1.37886 1.73915 1.05083 1.01670 1.22846 0.92105 0.86790 0.87110 0.81175 0.77047 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.87 -25.78 13.67 55.48 0.76 -25.02 14 2 C 0.04 1.19 5.49 -17.53 -0.10 1.09 14 3 Si 0.94 21.82 29.55 -169.99 -5.02 16.79 14 4 H -0.27 -6.15 7.11 56.52 0.40 -5.74 14 5 H -0.28 -6.13 7.11 56.52 0.40 -5.73 14 6 H -0.27 -6.10 7.11 56.52 0.40 -5.69 14 7 C -0.38 -11.60 9.65 30.92 0.30 -11.30 14 8 H 0.09 2.92 6.86 -52.48 -0.36 2.56 14 9 O -0.22 -6.31 9.75 -20.71 -0.20 -6.51 14 10 C 0.40 10.26 7.90 36.00 0.28 10.54 14 11 O -0.54 -15.53 14.83 -19.05 -0.28 -15.81 14 12 C -0.03 -0.54 6.41 -29.03 -0.19 -0.72 14 13 C 0.03 0.53 6.10 -82.10 -0.50 0.03 14 14 C -0.23 -2.99 11.12 -39.38 -0.44 -3.43 14 15 C -0.07 -0.86 12.30 29.74 0.37 -0.50 14 16 O 0.10 1.62 11.20 17.17 0.19 1.81 14 17 N -0.33 -6.56 11.46 33.42 0.38 -6.17 14 18 H 0.27 7.31 8.31 -40.82 -0.34 6.97 14 19 H 0.11 1.76 8.14 -51.93 -0.42 1.33 14 20 H 0.11 1.87 8.14 -51.93 -0.42 1.45 14 21 H 0.17 1.66 8.06 -52.49 -0.42 1.24 14 22 H 0.21 1.27 8.06 -52.49 -0.42 0.85 14 LS Contribution 218.30 15.07 3.29 3.29 Total: -1.00 -36.33 218.30 -2.34 -38.67 By element: Atomic # 1 Polarization: -1.58 SS G_CDS: -1.19 Total: -2.76 kcal Atomic # 6 Polarization: -4.01 SS G_CDS: -0.27 Total: -4.29 kcal Atomic # 7 Polarization: -32.33 SS G_CDS: 1.14 Total: -31.19 kcal Atomic # 8 Polarization: -20.23 SS G_CDS: -0.29 Total: -20.52 kcal Atomic # 14 Polarization: 21.82 SS G_CDS: -5.02 Total: 16.79 kcal Total LS contribution 3.29 Total: 3.29 kcal Total: -36.33 -2.34 -38.67 kcal The number of atoms in the molecule is 22 The average number of expansion shells was 14.00 The maximum number of expansion shells was 14 The minimum number of expansion shells was 14 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000388452442.mol2 22 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 20.903 kcal (2) G-P(sol) polarization free energy of solvation -36.331 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -15.427 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.342 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.673 kcal (6) G-S(sol) free energy of system = (1) + (5) -17.770 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.12 seconds