Wall clock time and date at job start Mon Mar 30 2020 01:53:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31441 * 1 3 3 Si 1.86801 * 120.00076 * 2 1 4 4 H 1.48500 * 109.47099 * 269.99872 * 3 2 1 5 5 H 1.48499 * 109.46984 * 29.99656 * 3 2 1 6 6 H 1.48500 * 109.47117 * 149.99532 * 3 2 1 7 7 C 1.38755 * 120.00098 * 179.97438 * 2 1 3 8 8 H 1.08003 * 120.00068 * 180.02562 * 7 2 1 9 9 O 1.34922 * 120.00272 * 0.02562 * 7 2 1 10 10 C 1.34310 * 117.00349 * 179.97438 * 9 7 2 11 11 O 1.21213 * 119.99644 * 0.02562 * 10 9 7 12 12 C 1.50693 * 119.99805 * 180.27868 * 10 9 7 13 13 C 1.50708 * 109.46934 * 179.72720 * 12 10 9 14 14 C 1.41381 * 126.80338 * 124.70879 * 13 12 10 15 15 C 1.35446 * 103.98610 * 179.88561 * 14 13 12 16 16 O 1.34043 * 106.44555 * 0.36946 * 15 14 13 17 17 N 1.20922 * 111.56643 * 359.74669 * 16 15 14 18 18 H 0.96993 * 120.00374 * 0.02562 * 1 2 3 19 19 H 1.09004 * 109.47536 * 299.72288 * 12 10 9 20 20 H 1.08994 * 109.47555 * 59.72727 * 12 10 9 21 21 H 1.07997 * 128.00622 * 0.02608 * 14 13 12 22 22 H 1.07998 * 126.77790 * 180.09110 * 15 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3144 0.0000 0.0000 3 14 2.2484 1.6177 0.0000 4 1 2.4960 2.0464 -1.4001 5 1 1.4458 2.6527 0.7000 6 1 3.5459 1.4402 0.7001 7 6 2.0082 -1.2016 0.0005 8 1 3.0882 -1.2016 0.0010 9 8 1.3337 -2.3701 0.0005 10 6 2.0652 -3.4966 0.0005 11 8 3.2756 -3.4330 0.0010 12 6 1.3810 -4.8392 -0.0058 13 6 2.4190 -5.9319 -0.0112 14 6 2.5351 -6.9944 0.9142 15 6 3.6102 -7.6929 0.4774 16 8 4.0616 -7.0535 -0.6107 17 7 3.3895 -6.0812 -0.8658 18 1 -0.4850 0.8400 -0.0004 19 1 0.7584 -4.9341 0.8839 20 1 0.7581 -4.9255 -0.8960 21 1 1.9099 -7.2023 1.7699 22 1 4.0248 -8.5860 0.9211 RHF calculation, no. of doubly occupied orbitals= 35 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000388452442.mol2 22 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:53:47 Heat of formation + Delta-G solvation = -44.137658 kcal Electronic energy + Delta-G solvation = -11872.407155 eV Core-core repulsion = 9395.644524 eV Total energy + Delta-G solvation = -2476.762632 eV No. of doubly occupied orbitals = 35 Molecular weight (most abundant/longest-lived isotopes) = 197.052 amu Computer time = 0.14 seconds Orbital eigenvalues (eV) -45.89424 -41.03645 -37.49255 -35.51453 -34.34208 -32.63238 -30.79579 -27.42589 -24.10384 -23.40234 -21.36743 -19.92441 -18.82168 -18.62868 -18.20568 -16.88434 -16.61643 -16.30375 -15.65112 -14.42879 -14.38686 -13.97247 -13.74071 -13.51980 -13.03038 -12.40991 -12.19737 -12.18354 -12.05383 -11.24239 -10.93731 -10.72958 -10.50220 -8.57615 -6.37908 0.72921 1.24210 1.27370 1.33873 1.49852 1.60346 2.11427 2.55728 2.79134 2.93281 3.20074 3.73900 4.21253 4.39587 4.45349 4.50091 4.79769 4.89437 5.12289 5.22974 5.79663 6.61967 6.87177 7.47636 7.70497 8.63049 Molecular weight = 197.05amu Principal moments of inertia in cm(-1) A = 0.090454 B = 0.007868 C = 0.007457 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 309.474244 B = 3557.985054 C = 3753.993946 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.900 5.900 2 C -0.003 4.003 3 Si 1.018 2.982 4 H -0.261 1.261 5 H -0.255 1.255 6 H -0.266 1.266 7 C -0.424 4.424 8 H 0.077 0.923 9 O -0.242 6.242 10 C 0.395 3.605 11 O -0.577 6.577 12 C -0.018 4.018 13 C -0.004 4.004 14 C -0.228 4.228 15 C -0.050 4.050 16 O 0.096 5.904 17 N -0.390 5.390 18 H 0.280 0.720 19 H 0.151 0.849 20 H 0.126 0.874 21 H 0.207 0.793 22 H 0.271 0.729 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.049 -12.920 3.211 13.470 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.538 5.538 2 C -0.203 4.203 3 Si 0.837 3.163 4 H -0.185 1.185 5 H -0.179 1.179 6 H -0.191 1.191 7 C -0.500 4.500 8 H 0.094 0.906 9 O -0.150 6.150 10 C 0.242 3.758 11 O -0.475 6.475 12 C -0.056 4.056 13 C -0.162 4.162 14 C -0.250 4.250 15 C -0.131 4.131 16 O 0.026 5.974 17 N -0.092 5.092 18 H 0.090 0.910 19 H 0.168 0.832 20 H 0.144 0.856 21 H 0.224 0.776 22 H 0.287 0.713 Dipole moment (debyes) X Y Z Total from point charges 2.545 -12.048 2.124 12.495 hybrid contribution -0.046 0.522 0.597 0.794 sum 2.499 -11.526 2.721 12.103 Atomic orbital electron populations 1.70056 1.07521 1.29497 1.46691 1.26535 0.96958 1.02242 0.94581 0.84627 0.77625 0.74544 0.79528 1.18543 1.17888 1.19071 1.21378 0.92017 0.81261 1.55307 0.90571 1.83881 1.40091 1.14074 1.76995 1.24195 0.86767 0.88242 0.76618 1.90558 1.17333 1.88575 1.51014 1.19507 0.94997 0.82706 1.08409 1.23301 0.97565 0.99602 0.95711 1.23115 1.02756 0.95537 1.03553 1.27010 0.95876 1.01283 0.88935 1.84797 1.44626 1.28515 1.39489 1.73916 1.06625 1.03729 1.24908 0.91035 0.83173 0.85624 0.77617 0.71301 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -53.85 13.67 21.62 0.30 -53.55 14 2 C 0.00 -0.16 5.49 84.87 0.47 0.31 14 3 Si 1.02 44.57 29.55 68.60 2.03 46.60 14 4 H -0.26 -10.85 7.11 99.48 0.71 -10.14 14 5 H -0.26 -10.16 7.11 99.48 0.71 -9.46 14 6 H -0.27 -11.52 7.11 99.48 0.71 -10.81 14 7 C -0.42 -26.69 9.65 67.94 0.66 -26.04 14 8 H 0.08 4.93 6.86 -2.91 -0.02 4.91 14 9 O -0.24 -14.68 9.75 14.85 0.14 -14.54 14 10 C 0.39 20.85 7.90 71.23 0.56 21.41 14 11 O -0.58 -34.19 14.83 20.77 0.31 -33.88 14 12 C -0.02 -0.68 6.41 29.10 0.19 -0.50 14 13 C 0.00 -0.14 6.10 43.58 0.27 0.12 14 14 C -0.23 -5.32 11.12 22.40 0.25 -5.07 14 15 C -0.05 -0.98 12.30 67.17 0.83 -0.15 14 16 O 0.10 2.91 11.20 71.61 0.80 3.71 14 17 N -0.39 -15.29 11.46 -49.56 -0.57 -15.86 14 18 H 0.28 15.11 8.31 -92.71 -0.77 14.34 14 19 H 0.15 4.36 8.14 -2.38 -0.02 4.34 14 20 H 0.13 4.21 8.14 -2.39 -0.02 4.19 14 21 H 0.21 3.09 8.06 -2.91 -0.02 3.07 14 22 H 0.27 1.65 8.06 -2.91 -0.02 1.62 14 Total: -1.00 -82.85 218.30 7.47 -75.38 By element: Atomic # 1 Polarization: 0.81 SS G_CDS: 1.24 Total: 2.06 kcal Atomic # 6 Polarization: -13.13 SS G_CDS: 3.21 Total: -9.92 kcal Atomic # 7 Polarization: -69.14 SS G_CDS: -0.27 Total: -69.42 kcal Atomic # 8 Polarization: -45.96 SS G_CDS: 1.25 Total: -44.71 kcal Atomic # 14 Polarization: 44.57 SS G_CDS: 2.03 Total: 46.60 kcal Total: -82.85 7.47 -75.38 kcal The number of atoms in the molecule is 22 The average number of expansion shells was 14.00 The maximum number of expansion shells was 14 The minimum number of expansion shells was 14 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000388452442.mol2 22 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 31.245 kcal (2) G-P(sol) polarization free energy of solvation -82.849 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -51.603 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 7.466 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.383 kcal (6) G-S(sol) free energy of system = (1) + (5) -44.138 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.14 seconds