Wall clock time and date at job start Mon Mar 30 2020 02:11:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46499 * 1 3 3 N 1.28716 * 125.31399 * 2 1 4 4 N 1.28984 * 109.00074 * 179.97438 * 3 2 1 5 5 C 1.34227 * 107.24968 * 0.02562 * 4 3 2 6 6 C 1.47889 * 126.70707 * 180.02562 * 5 4 3 7 7 O 1.21571 * 120.00204 * 179.97438 * 6 5 4 8 8 N 1.34782 * 119.99652 * 359.97016 * 6 5 4 9 9 C 1.36881 * 119.99517 * 180.02562 * 8 6 5 10 10 H 1.07994 * 120.00412 * 0.02562 * 9 8 6 11 11 C 1.39044 * 119.99688 * 180.02562 * 9 8 6 12 12 N 1.31365 * 120.00249 * 0.02562 * 11 9 8 13 13 Si 1.86805 * 119.99985 * 179.97438 * 11 9 8 14 14 H 1.48497 * 109.46991 * 0.02562 * 13 11 9 15 15 H 1.48500 * 109.47042 * 119.99746 * 13 11 9 16 16 H 1.48501 * 109.46973 * 239.99947 * 13 11 9 17 17 N 1.28874 * 125.31179 * 179.97438 * 2 1 3 18 18 H 1.08997 * 109.47391 * 270.03771 * 1 2 3 19 19 H 1.08999 * 109.47005 * 30.04439 * 1 2 3 20 20 H 1.09011 * 109.47021 * 150.03703 * 1 2 3 21 21 H 0.96996 * 119.99971 * 0.02562 * 8 6 5 22 22 H 0.96995 * 120.00068 * 180.02562 * 12 11 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 7 2.2090 1.0503 0.0000 4 7 3.4470 0.6880 0.0005 5 6 3.4689 -0.6541 0.0003 6 6 4.6688 -1.5186 0.0013 7 8 4.5466 -2.7281 0.0014 8 7 5.8979 -0.9653 0.0019 9 6 7.0085 -1.7655 0.0023 10 1 6.8999 -2.8400 0.0017 11 6 8.2764 -1.1948 0.0035 12 7 8.4085 0.1122 0.0048 13 14 9.7921 -2.2867 0.0047 14 1 9.3753 -3.7120 0.0036 15 1 10.6039 -2.0080 -1.2070 16 1 10.6018 -2.0082 1.2180 17 7 2.2099 -1.0516 0.0005 18 1 -0.3634 0.0007 1.0276 19 1 -0.3633 0.8896 -0.5145 20 1 -0.3634 -0.8904 -0.5133 21 1 5.9953 -0.0003 0.0021 22 1 9.2930 0.5102 0.0053 RHF calculation, no. of doubly occupied orbitals= 35 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000575519882.mol2 22 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:11:18 Heat of formation + Delta-G solvation = 94.190177 kcal Electronic energy + Delta-G solvation = -11865.915784 eV Core-core repulsion = 9459.737000 eV Total energy + Delta-G solvation = -2406.178784 eV No. of doubly occupied orbitals = 35 Molecular weight (most abundant/longest-lived isotopes) = 197.065 amu Computer time = 0.11 seconds Orbital eigenvalues (eV) -43.83141 -38.06236 -34.76892 -34.17210 -32.54096 -31.41497 -28.61203 -25.75010 -23.80977 -22.44253 -20.09728 -18.18709 -17.43521 -17.14077 -15.90639 -14.88843 -14.12007 -13.88428 -13.58124 -13.44222 -13.04930 -12.79394 -11.70186 -11.66321 -11.19792 -10.62953 -10.61334 -10.41410 -10.34104 -9.91797 -9.59849 -8.81970 -8.15624 -6.59661 -3.95630 1.49176 2.15372 2.18513 3.15332 3.21614 3.29136 3.91468 4.15360 4.23468 4.54371 4.81861 5.01518 5.10077 5.20941 5.62018 6.00101 6.29526 6.46934 7.38994 7.85606 8.38197 8.69695 8.97948 9.33937 9.85125 10.55967 Molecular weight = 197.07amu Principal moments of inertia in cm(-1) A = 0.092388 B = 0.008275 C = 0.007626 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 302.995977 B = 3383.056801 C = 3670.908419 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.098 3.902 2 N -0.151 5.151 3 N -0.074 5.074 4 N -0.266 5.266 5 C 0.167 3.833 6 C 0.506 3.494 7 O -0.574 6.574 8 N -0.515 5.515 9 C -0.298 4.298 10 H 0.113 0.887 11 C 0.028 3.972 12 N -0.876 5.876 13 Si 0.939 3.061 14 H -0.264 1.264 15 H -0.278 1.278 16 H -0.278 1.278 17 N -0.275 5.275 18 H 0.098 0.902 19 H 0.109 0.891 20 H 0.108 0.892 21 H 0.404 0.596 22 H 0.278 0.722 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.616 2.199 -0.059 10.841 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.042 4.042 2 N -0.064 5.064 3 N -0.068 5.068 4 N -0.141 5.141 5 C -0.117 4.117 6 C 0.288 3.712 7 O -0.457 6.457 8 N -0.150 5.150 9 C -0.429 4.429 10 H 0.131 0.869 11 C -0.177 4.177 12 N -0.515 5.515 13 Si 0.765 3.235 14 H -0.188 1.188 15 H -0.204 1.204 16 H -0.204 1.204 17 N -0.128 5.128 18 H 0.116 0.884 19 H 0.127 0.873 20 H 0.127 0.873 21 H 0.239 0.761 22 H 0.088 0.912 Dipole moment (debyes) X Y Z Total from point charges -10.925 2.053 -0.058 11.116 hybrid contribution 0.838 -0.155 0.018 0.853 sum -10.086 1.897 -0.040 10.263 Atomic orbital electron populations 1.22323 0.69715 1.06484 1.05671 1.50141 1.10557 1.01203 1.44454 1.78793 0.97005 1.14496 1.16500 1.76180 1.09196 1.11155 1.17545 1.26029 0.93620 0.89630 1.02379 1.15731 0.80465 0.85810 0.89166 1.90657 1.84630 1.12570 1.57891 1.41685 1.03347 1.10617 1.59309 1.19937 0.82607 0.92744 1.47613 0.86921 1.25489 0.99689 0.96349 0.96217 1.69642 1.25518 1.09679 1.46636 0.85653 0.79887 0.79999 0.77971 1.18783 1.20380 1.20375 1.75106 1.02923 1.13611 1.21141 0.88363 0.87257 0.87323 0.76055 0.91181 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.10 0.80 11.62 59.85 0.70 1.50 14 2 N -0.15 -2.43 4.39 -16.64 -0.07 -2.50 14 3 N -0.07 -1.35 13.23 60.35 0.80 -0.55 14 4 N -0.27 -5.77 12.26 32.09 0.39 -5.38 14 5 C 0.17 3.86 8.13 -156.21 -1.27 2.59 14 6 C 0.51 13.43 7.78 -12.31 -0.10 13.33 14 7 O -0.57 -16.71 16.67 5.30 0.09 -16.63 14 8 N -0.51 -13.88 5.28 -11.82 -0.06 -13.94 14 9 C -0.30 -8.30 9.68 -15.00 -0.15 -8.44 14 10 H 0.11 3.21 7.15 -52.49 -0.38 2.83 14 11 C 0.03 0.73 5.50 -17.45 -0.10 0.64 14 12 N -0.88 -23.55 13.05 55.50 0.72 -22.82 14 13 Si 0.94 20.29 29.55 -169.99 -5.02 15.27 14 14 H -0.26 -5.67 7.11 56.52 0.40 -5.27 14 15 H -0.28 -5.89 7.11 56.52 0.40 -5.49 14 16 H -0.28 -5.89 7.11 56.52 0.40 -5.49 14 17 N -0.27 -5.62 12.17 32.10 0.39 -5.23 14 18 H 0.10 0.59 8.14 -51.93 -0.42 0.17 14 19 H 0.11 0.60 8.14 -51.93 -0.42 0.17 14 20 H 0.11 0.71 8.14 -51.92 -0.42 0.29 14 21 H 0.40 10.71 7.64 -40.82 -0.31 10.39 14 22 H 0.28 6.93 8.31 -40.82 -0.34 6.59 14 LS Contribution 218.17 15.07 3.29 3.29 Total: -1.00 -33.20 218.17 -1.48 -34.68 By element: Atomic # 1 Polarization: 5.28 SS G_CDS: -1.09 Total: 4.19 kcal Atomic # 6 Polarization: 10.54 SS G_CDS: -0.91 Total: 9.62 kcal Atomic # 7 Polarization: -52.60 SS G_CDS: 2.17 Total: -50.42 kcal Atomic # 8 Polarization: -16.71 SS G_CDS: 0.09 Total: -16.63 kcal Atomic # 14 Polarization: 20.29 SS G_CDS: -5.02 Total: 15.27 kcal Total LS contribution 3.29 Total: 3.29 kcal Total: -33.20 -1.48 -34.68 kcal The number of atoms in the molecule is 22 The average number of expansion shells was 14.00 The maximum number of expansion shells was 14 The minimum number of expansion shells was 14 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000575519882.mol2 22 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 128.870 kcal (2) G-P(sol) polarization free energy of solvation -33.201 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 95.669 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.479 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.679 kcal (6) G-S(sol) free energy of system = (1) + (5) 94.190 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.11 seconds